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Search of human proteins with 134142828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134142828 RNA guanylyltransferase and 5'-phosphatase [Homo
sapiens]
(597 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134142828 RNA guanylyltransferase and 5'-phosphatase [Homo sa... 1246 0.0
gi|205277447 dual specificity phosphatase 11 [Homo sapiens] 99 1e-20
gi|56786144 dual specificity phosphatase 23 [Homo sapiens] 48 2e-05
gi|148224884 protein tyrosine phosphatase, mitochondrial 1 isofo... 39 0.014
gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens] 38 0.023
gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens] 38 0.023
gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens] 38 0.023
gi|15451933 CDC14 homolog A isoform 3 [Homo sapiens] 36 0.088
gi|15451929 CDC14 homolog A isoform 1 [Homo sapiens] 36 0.088
gi|15451931 CDC14 homolog A isoform 2 [Homo sapiens] 36 0.088
gi|55956788 nucleolin [Homo sapiens] 35 0.20
gi|40549435 transmembrane phosphatase with tensin homology isofo... 35 0.20
gi|40549433 transmembrane phosphatase with tensin homology isofo... 35 0.20
gi|109689707 transmembrane phosphatase with tensin homology isof... 35 0.20
gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo... 35 0.26
gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo s... 35 0.26
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 35 0.26
gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo s... 35 0.26
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 35 0.26
gi|18104971 protein tyrosine phosphatase type IVA, member 2 isof... 35 0.26
gi|14589856 protein tyrosine phosphatase type IVA, member 3 isof... 34 0.33
gi|115529449 upstream binding transcription factor, RNA polymera... 34 0.33
gi|115529451 upstream binding transcription factor, RNA polymera... 34 0.33
gi|7657671 upstream binding transcription factor, RNA polymerase... 34 0.33
gi|217416374 hypothetical protein LOC92749 [Homo sapiens] 34 0.44
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 33 0.57
gi|11321613 laforin isoform a [Homo sapiens] 33 0.97
gi|12758125 ribosomal RNA processing 8, methyltransferase, homol... 32 1.3
gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens] 32 1.7
gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens] 32 1.7
>gi|134142828 RNA guanylyltransferase and 5'-phosphatase [Homo
sapiens]
Length = 597
Score = 1246 bits (3225), Expect = 0.0
Identities = 597/597 (100%), Positives = 597/597 (100%)
Query: 1 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK 60
MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK
Sbjct: 1 MAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVK 60
Query: 61 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE 120
MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE
Sbjct: 61 MGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPE 120
Query: 121 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI 180
LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI
Sbjct: 121 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI 180
Query: 181 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG 240
EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG
Sbjct: 181 EEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKG 240
Query: 241 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY 300
VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY
Sbjct: 241 VTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRY 300
Query: 301 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL 360
MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL
Sbjct: 301 MMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYL 360
Query: 361 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT 420
IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT
Sbjct: 361 IYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICT 420
Query: 421 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG 480
SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG
Sbjct: 421 SRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG 480
Query: 481 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN 540
LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN
Sbjct: 481 LLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYN 540
Query: 541 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT 597
TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT
Sbjct: 541 TAMAVCNSISNPVTKEMLFEFIDRCTAASQGQKRKHHLDPDTELMPPPPPKRPRPLT 597
>gi|205277447 dual specificity phosphatase 11 [Homo sapiens]
Length = 377
Score = 98.6 bits (244), Expect = 1e-20
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 4 NKIPPRWLNCPRRGQPVAG-RFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMG 62
N IP RW + GQ + G RF+ K L ++ ++A E F P L N ++ ++G
Sbjct: 76 NHIPERWKDYLPVGQRMPGTRFIAFKVPLQKSFEKKLAPEECFSPLDLFNKIREQNEELG 135
Query: 63 LLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPP--E 120
L++DLT T R+Y D+ E + Y+K+ GH + P E F F + N +
Sbjct: 136 LIIDLTYTQRYYKPEDLP-ETVPYLKIFTVGH-QVPDDETIFKFKHAVNGFLKENKDNDK 193
Query: 121 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKEL 173
LIGVHCTHG NRTG+LIC +L++ + A+ F + R + + +Y+++L
Sbjct: 194 LIGVHCTHGLNRTGYLICRYLIDVEGVRPDDAIELFNRCRGHCLERQNYIEDL 246
>gi|56786144 dual specificity phosphatase 23 [Homo sapiens]
Length = 150
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 98 PTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFA 157
P + + F+++ + N R E +GVHC GF RTG ++ +LV++ + A+A
Sbjct: 69 PAPDQIDRFVQIVDEANARG--EAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIR 126
Query: 158 QARPPGIYKGDYLKELFRRY 177
+ RP I + K +F+ Y
Sbjct: 127 RLRPGSIETYEQEKAVFQFY 146
>gi|148224884 protein tyrosine phosphatase, mitochondrial 1 isoform
1 [Homo sapiens]
Length = 201
Score = 38.9 bits (89), Expect = 0.014
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 83 GIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLV 142
G++ ++L PT +N + ++ ++ + + VHC G +R+ ++ A+L+
Sbjct: 91 GVEQLRLSTVDMTGIPTLDNLQKGVQFALKYQSLG--QCVYVHCKAGRSRSATMVAAYLI 148
Query: 143 EKMDWSIEAAVATFAQARP-----PGIYKGDYLKELFRR 176
+ WS E AV A+ R PG + D LKE ++
Sbjct: 149 QVHKWSPEEAVRAIAKIRSYIHIRPG--QLDVLKEFHKQ 185
>gi|116008458 CDC14 homolog B isoform 3 [Homo sapiens]
Length = 461
Score = 38.1 bits (87), Expect = 0.023
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 37 SQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGE 96
S+ E+ +H Y++ K + + R YD G + L G
Sbjct: 195 SRARLESGYHQHSPETYIQYFK-NHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFF-ADGS 252
Query: 97 CPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATF 156
PT + F+ +CE N I VHC G RTG LI ++++ + +A
Sbjct: 253 TPTDAIVKEFLDICE-----NAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWV 307
Query: 157 AQARPPGI 164
RP +
Sbjct: 308 RICRPGSV 315
>gi|4502699 CDC14 homolog B isoform 1 [Homo sapiens]
Length = 459
Score = 38.1 bits (87), Expect = 0.023
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 37 SQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGE 96
S+ E+ +H Y++ K + + R YD G + L G
Sbjct: 232 SRARLESGYHQHSPETYIQYFK-NHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFF-ADGS 289
Query: 97 CPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATF 156
PT + F+ +CE N I VHC G RTG LI ++++ + +A
Sbjct: 290 TPTDAIVKEFLDICE-----NAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWV 344
Query: 157 AQARPPGI 164
RP +
Sbjct: 345 RICRPGSV 352
>gi|15451936 CDC14 homolog B isoform 2 [Homo sapiens]
Length = 498
Score = 38.1 bits (87), Expect = 0.023
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 37 SQVAEENRFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGE 96
S+ E+ +H Y++ K + + R YD G + L G
Sbjct: 232 SRARLESGYHQHSPETYIQYFK-NHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFF-ADGS 289
Query: 97 CPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATF 156
PT + F+ +CE N I VHC G RTG LI ++++ + +A
Sbjct: 290 TPTDAIVKEFLDICE-----NAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWV 344
Query: 157 AQARPPGI 164
RP +
Sbjct: 345 RICRPGSV 352
>gi|15451933 CDC14 homolog A isoform 3 [Homo sapiens]
Length = 383
Score = 36.2 bits (82), Expect = 0.088
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 14/146 (9%)
Query: 20 VAGRFLPLKTMLGPRYDSQVAEENRFH-PSMLSNYLKSLKVKMGLLVDLTNTSRFYDRND 78
V G+FL GP S++ H P Y K V + ++ + Y+
Sbjct: 184 VPGKFLAFS---GPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLN----KKIYEAKR 236
Query: 79 IEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLIC 138
G ++ L G P+ F+ +CE N I VHC G RTG LI
Sbjct: 237 FTDAGFEHYDLFFID-GSTPSDNIVRRFLNICE-----NTEGAIAVHCKAGLGRTGTLIA 290
Query: 139 AFLVEKMDWSIEAAVATFAQARPPGI 164
++++ ++ +A RP I
Sbjct: 291 CYVMKHYRFTHAEIIAWIRICRPGSI 316
>gi|15451929 CDC14 homolog A isoform 1 [Homo sapiens]
Length = 594
Score = 36.2 bits (82), Expect = 0.088
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 14/146 (9%)
Query: 20 VAGRFLPLKTMLGPRYDSQVAEENRFH-PSMLSNYLKSLKVKMGLLVDLTNTSRFYDRND 78
V G+FL GP S++ H P Y K V + ++ + Y+
Sbjct: 184 VPGKFLAFS---GPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLN----KKIYEAKR 236
Query: 79 IEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLIC 138
G ++ L G P+ F+ +CE N I VHC G RTG LI
Sbjct: 237 FTDAGFEHYDLFFID-GSTPSDNIVRRFLNICE-----NTEGAIAVHCKAGLGRTGTLIA 290
Query: 139 AFLVEKMDWSIEAAVATFAQARPPGI 164
++++ ++ +A RP I
Sbjct: 291 CYVMKHYRFTHAEIIAWIRICRPGSI 316
>gi|15451931 CDC14 homolog A isoform 2 [Homo sapiens]
Length = 623
Score = 36.2 bits (82), Expect = 0.088
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 14/146 (9%)
Query: 20 VAGRFLPLKTMLGPRYDSQVAEENRFH-PSMLSNYLKSLKVKMGLLVDLTNTSRFYDRND 78
V G+FL GP S++ H P Y K V + ++ + Y+
Sbjct: 184 VPGKFLAFS---GPHPKSKIENGYPLHAPEAYFPYFKKHNVTAVVRLN----KKIYEAKR 236
Query: 79 IEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLIC 138
G ++ L G P+ F+ +CE N I VHC G RTG LI
Sbjct: 237 FTDAGFEHYDLFFID-GSTPSDNIVRRFLNICE-----NTEGAIAVHCKAGLGRTGTLIA 290
Query: 139 AFLVEKMDWSIEAAVATFAQARPPGI 164
++++ ++ +A RP I
Sbjct: 291 CYVMKHYRFTHAEIIAWIRICRPGSI 316
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.20
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 195 EDDEDEDEDEDGKKESEPGSSASFGKRRKERLK 227
EDD+DED++E+ ++E E + GKR+KE K
Sbjct: 254 EDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAK 286
>gi|40549435 transmembrane phosphatase with tensin homology isoform
gamma [Homo sapiens]
Length = 513
Score = 35.0 bits (79), Expect = 0.20
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 98 PTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLV 142
PT F + + ++ ++ +HC G +RTG ++CAFL+
Sbjct: 272 PTLHQMVVFTKEVNEWMAQDLENIVAIHCKGGTDRTGTMVCAFLI 316
>gi|40549433 transmembrane phosphatase with tensin homology isoform
beta [Homo sapiens]
Length = 533
Score = 35.0 bits (79), Expect = 0.20
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 98 PTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLV 142
PT F + + ++ ++ +HC G +RTG ++CAFL+
Sbjct: 292 PTLHQMVVFTKEVNEWMAQDLENIVAIHCKGGTDRTGTMVCAFLI 336
>gi|109689707 transmembrane phosphatase with tensin homology isoform
alpha [Homo sapiens]
Length = 551
Score = 35.0 bits (79), Expect = 0.20
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 98 PTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLV 142
PT F + + ++ ++ +HC G +RTG ++CAFL+
Sbjct: 310 PTLHQMVVFTKEVNEWMAQDLENIVAIHCKGGTDRTGTMVCAFLI 354
>gi|4506283 protein tyrosine phosphatase type IVA, member 1 [Homo
sapiens]
Length = 173
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 50 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 109
L+ +++ LK K G+ + YD +EKEGI + G P+ + + ++ L
Sbjct: 30 LNKFIEELK-KYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDD-GAPPSNQIVDDWLSL 87
Query: 110 CERFNERNPPELIGVHCTHGFNRTGFLICAFLVE 143
+ P I VHC G R L+ L+E
Sbjct: 88 VKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE 121
>gi|154354972 phosphatase and actin regulator 2 isoform 4 [Homo
sapiens]
Length = 554
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERL--KLG-AIFLEGVTVKGVTQVTTQPKL 250
+ DDEDEDEDEDG ES S RR++ L KLG + + K + Q T++ +
Sbjct: 371 YTDDEDEDEDEDGSGESALASKI----RRRDTLAIKLGNRPSKKELEDKNILQRTSEEER 426
Query: 251 GEVQQK 256
E++Q+
Sbjct: 427 QEIRQQ 432
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERL--KLG-AIFLEGVTVKGVTQVTTQPKL 250
+ DDEDEDEDEDG ES S RR++ L KLG + + K + Q T++ +
Sbjct: 451 YTDDEDEDEDEDGSGESALASKI----RRRDTLAIKLGNRPSKKELEDKNILQRTSEEER 506
Query: 251 GEVQQK 256
E++Q+
Sbjct: 507 QEIRQQ 512
>gi|154354970 phosphatase and actin regulator 2 isoform 2 [Homo
sapiens]
Length = 565
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERL--KLG-AIFLEGVTVKGVTQVTTQPKL 250
+ DDEDEDEDEDG ES S RR++ L KLG + + K + Q T++ +
Sbjct: 382 YTDDEDEDEDEDGSGESALASKI----RRRDTLAIKLGNRPSKKELEDKNILQRTSEEER 437
Query: 251 GEVQQK 256
E++Q+
Sbjct: 438 QEIRQQ 443
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 34.7 bits (78), Expect = 0.26
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERL--KLG-AIFLEGVTVKGVTQVTTQPKL 250
+ DDEDEDEDEDG ES S RR++ L KLG + + K + Q T++ +
Sbjct: 462 YTDDEDEDEDEDGSGESALASKI----RRRDTLAIKLGNRPSKKELEDKNILQRTSEEER 517
Query: 251 GEVQQK 256
E++Q+
Sbjct: 518 QEIRQQ 523
>gi|18104971 protein tyrosine phosphatase type IVA, member 2 isoform
1 [Homo sapiens]
Length = 167
Score = 34.7 bits (78), Expect = 0.26
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 50 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 109
L+ + + LK K G+ + YD+ +EKEGI + G P + + ++ L
Sbjct: 27 LNKFTEELK-KYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDD-GAPPPNQIVDDWLNL 84
Query: 110 CERFNERNPPELIGVHCTHGFNRTGFLICAFLVE 143
+ P + VHC G R L+ L+E
Sbjct: 85 LKTKFREEPGCCVAVHCVAGLGRAPVLVALALIE 118
>gi|14589856 protein tyrosine phosphatase type IVA, member 3 isoform
1 [Homo sapiens]
Length = 173
Score = 34.3 bits (77), Expect = 0.33
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 50 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 109
LS +++ LK K G + YD+ +EK+GI + G P + E ++ L
Sbjct: 30 LSTFIEDLK-KYGATTVVRVCEVTYDKTPLEKDGITVVDWPFDD-GAPPPGKVVEDWLSL 87
Query: 110 CERFNERNPPELIGVHCTHGFNRTGFLICAFLVE 143
+ P + VHC G R L+ L+E
Sbjct: 88 VKAKFCEAPGSCVAVHCVAGLGRAPVLVALALIE 121
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 34.3 bits (77), Expect = 0.33
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 195 EDDEDEDEDEDGKKESEPGSSASFG 219
+DDED+DEDED + E SS+S G
Sbjct: 695 DDDEDDDEDEDNESEGSSSSSSSSG 719
Score = 31.6 bits (70), Expect = 2.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 195 EDDEDEDEDEDGKKESEPGSSAS 217
++D+DED+DED ESE SS+S
Sbjct: 693 DEDDDEDDDEDEDNESEGSSSSS 715
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 34.3 bits (77), Expect = 0.33
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 195 EDDEDEDEDEDGKKESEPGSSASFG 219
+DDED+DEDED + E SS+S G
Sbjct: 695 DDDEDDDEDEDNESEGSSSSSSSSG 719
Score = 31.6 bits (70), Expect = 2.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 195 EDDEDEDEDEDGKKESEPGSSAS 217
++D+DED+DED ESE SS+S
Sbjct: 693 DEDDDEDDDEDEDNESEGSSSSS 715
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 34.3 bits (77), Expect = 0.33
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 195 EDDEDEDEDEDGKKESEPGSSASFG 219
+DDED+DEDED + E SS+S G
Sbjct: 732 DDDEDDDEDEDNESEGSSSSSSSSG 756
Score = 31.6 bits (70), Expect = 2.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 195 EDDEDEDEDEDGKKESEPGSSAS 217
++D+DED+DED ESE SS+S
Sbjct: 730 DEDDDEDDDEDEDNESEGSSSSS 752
>gi|217416374 hypothetical protein LOC92749 [Homo sapiens]
Length = 740
Score = 33.9 bits (76), Expect = 0.44
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 205 DGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQ 259
DGKKESE S S+ ++ + RLKL + L G + VT + + E+ ++ +
Sbjct: 60 DGKKESEEDQSKSYKQKEESRLKLAKLLLCGTEL--VTNIQVAIDIREIHRRVEE 112
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 33.5 bits (75), Expect = 0.57
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 195 EDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQPKLGEVQ 254
EDD+D+DE ED +ESE + GK KE+++ + VT K + +P+ E
Sbjct: 151 EDDDDDDEGEDDGEESEETNREEEGK-AKEQIRNCENNCQQVTDKAFKEQRDRPEAQEQS 209
Query: 255 QK 256
+K
Sbjct: 210 EK 211
>gi|11321613 laforin isoform a [Homo sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.97
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 121 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYL-----KELFR 175
++ VHC G R+ +C +L M W++ V F A+ P +Y + ++ F+
Sbjct: 261 IVYVHCNAGVGRSTAAVCGWLQYVMGWNLR-KVQYFLMAKRPAVYIDEEALARAQEDFFQ 319
Query: 176 RYGDIEEA 183
++G + +
Sbjct: 320 KFGKVRSS 327
>gi|12758125 ribosomal RNA processing 8, methyltransferase, homolog
[Homo sapiens]
Length = 456
Score = 32.3 bits (72), Expect = 1.3
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 141 LVEKMDWSIEAAVATFAQ---ARPPGIY----KGDYLKELFRRYGDIEEAPPPPLLPDWC 193
+ E+ +W+ A VA +RPP KG ++L +E A P C
Sbjct: 1 MFEEPEWAEAAPVAAGLGPVISRPPPAASSQNKGSKRRQLLATLRALEAASLSQHPPSLC 60
Query: 194 FEDDEDEDEDEDGK---KESEPGSSASFGKRRKER 225
D E+E+E+ K K S +SA GK+ K++
Sbjct: 61 ISDSEEEEEERKKKCPKKASFASASAEVGKKGKKK 95
>gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]
Length = 452
Score = 32.0 bits (71), Expect = 1.7
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQ-PKLGE 252
+ +DEDE+E+E G+ E E G + E V V+ V V T+ P E
Sbjct: 327 YREDEDEEEEEGGEGEKEGE---------------GEVGGEAVEVEEVENVQTEFPGEDE 371
Query: 253 VQQKCHQFCGWEGSGFPGAQPVS 275
+K + E PGA PVS
Sbjct: 372 NPEKASELSQVELQAAPGALPVS 394
>gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]
Length = 548
Score = 32.0 bits (71), Expect = 1.7
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 194 FEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKLGAIFLEGVTVKGVTQVTTQ-PKLGE 252
+ +DEDE+E+E G+ E E G + E V V+ V V T+ P E
Sbjct: 327 YREDEDEEEEEGGEGEKEGE---------------GEVGGEAVEVEEVENVQTEFPGEDE 371
Query: 253 VQQKCHQFCGWEGSGFPGAQPVS 275
+K + E PGA PVS
Sbjct: 372 NPEKASELSQVELQAAPGALPVS 394
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,996,587
Number of Sequences: 37866
Number of extensions: 1347187
Number of successful extensions: 9586
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 9105
Number of HSP's gapped (non-prelim): 351
length of query: 597
length of database: 18,247,518
effective HSP length: 108
effective length of query: 489
effective length of database: 14,157,990
effective search space: 6923257110
effective search space used: 6923257110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.