Search of human proteins with 55956781

Search of human proteins with 55956781

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo
sapiens]
         (59 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo s...   119   4e-28
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ...    85   1e-17
gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo s...    85   1e-17
gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo s...    74   2e-14
gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo s...    27   3.5  
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]                 27   4.6  
gi|178557813 hypothetical protein LOC644186 [Homo sapiens]             26   7.9  
gi|4505727 peroxisomal biogenesis factor 3 [Homo sapiens]              26   7.9  

>gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo
          sapiens]
          Length = 59

 Score =  119 bits (299), Expect = 4e-28
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEIRRLTAQSQWLTQTSWL 59
          MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEIRRLTAQSQWLTQTSWL
Sbjct: 1  MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEIRRLTAQSQWLTQTSWL 59


>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
           sapiens]
          Length = 547

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1   MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
           MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE
Sbjct: 405 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 446


>gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
          sapiens]
          Length = 143

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
          MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE
Sbjct: 1  MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42


>gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
          sapiens]
          Length = 140

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 39/42 (92%), Positives = 39/42 (92%), Gaps = 3/42 (7%)

Query: 1  MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
          MGFPEAA   RTHQIEAVPTSSASDGFKANLVFKEIEKKLEE
Sbjct: 1  MGFPEAA---RTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 39


>gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo
           sapiens]
          Length = 1704

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 29  ANLVFKEIEKKLEEIRRLTAQSQWLTQTSW 58
           A  V +E E++L+E  R+   S WL  ++W
Sbjct: 279 ARAVVQEKERRLKEYMRMMGLSSWLHWSAW 308


>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
          Length = 775

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 15  IEAVPTSSASDGFKANLVF--KEIEKKLEEIRRLTAQSQ 51
           +E +P+S A+DG KA  ++  +E+++  EE  R   ++Q
Sbjct: 462 LEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRAQ 500


>gi|178557813 hypothetical protein LOC644186 [Homo sapiens]
          Length = 88

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 8/20 (40%), Positives = 16/20 (80%)

Query: 34 KEIEKKLEEIRRLTAQSQWL 53
          K++EK LEE+ +++ Q+ W+
Sbjct: 23 KDLEKLLEEMEKISVQATWM 42


>gi|4505727 peroxisomal biogenesis factor 3 [Homo sapiens]
          Length = 373

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 16  EAVPTSSASDGFKANLVFKEIEKKLEEIRRLTAQ---SQWLTQ 55
           +AV     S   K +L   ++E+KL+EIR L  Q   S W+ +
Sbjct: 185 QAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINK 227


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.124    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,005,147
Number of Sequences: 37866
Number of extensions: 52585
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 8
length of query: 59
length of database: 18,247,518
effective HSP length: 32
effective length of query: 27
effective length of database: 17,035,806
effective search space: 459966762
effective search space used: 459966762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.