Search of human proteins with 55770836

Search of human proteins with 55770836

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55770836 saccharopine dehydrogenase (putative) [Homo
sapiens]
         (429 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55770836 saccharopine dehydrogenase (putative) [Homo sapiens]      858   0.0  
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi...    29   7.2  
gi|119220552 sidekick 1 [Homo sapiens]                                 29   7.2  
gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo sapi...    29   7.2  
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]           29   7.2  

>gi|55770836 saccharopine dehydrogenase (putative) [Homo sapiens]
          Length = 429

 Score =  858 bits (2218), Expect = 0.0
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   MATEQRPFHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAA 60
           MATEQRPFHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAA
Sbjct: 1   MATEQRPFHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAA 60

Query: 61  LKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASC 120
           LKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASC
Sbjct: 61  LKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASC 120

Query: 121 IDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESF 180
           IDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESF
Sbjct: 121 IDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESF 180

Query: 181 LTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLRNVSNLKPVPLIGPKLKRRWPISYCRE 240
           LTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLRNVSNLKPVPLIGPKLKRRWPISYCRE
Sbjct: 181 LTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLRNVSNLKPVPLIGPKLKRRWPISYCRE 240

Query: 241 LKGYSIPFMGSDVSVVRRTQRYLYENLEESPVQYAAYVTVGGITSVIKLMFAGLFFLFFV 300
           LKGYSIPFMGSDVSVVRRTQRYLYENLEESPVQYAAYVTVGGITSVIKLMFAGLFFLFFV
Sbjct: 241 LKGYSIPFMGSDVSVVRRTQRYLYENLEESPVQYAAYVTVGGITSVIKLMFAGLFFLFFV 300

Query: 301 RFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQGTGTDKNKPNIKI 360
           RFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQGTGTDKNKPNIKI
Sbjct: 301 RFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQGTGTDKNKPNIKI 360

Query: 361 CTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIE 420
           CTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIE
Sbjct: 361 CTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIE 420

Query: 421 FSVISSSEV 429
           FSVISSSEV
Sbjct: 421 FSVISSSEV 429


>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 219 LKPVPLIGPKLKRRWPIS------YCRELKGYSIPFMGSDVSVVRRTQRYLYE 265
           LKP      K +R W IS        R+   Y +   GSD   V +T+R+L E
Sbjct: 525 LKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLE 577


>gi|119220552 sidekick 1 [Homo sapiens]
          Length = 2213

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 61  LKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASC 120
           L +  PT S++ G  +C+ A P S  E A+ AT  L  + P  F  EP  +   E     
Sbjct: 347 LTISNPT-SADTGPYVCEAALPGSAFEPAR-ATAFLFIIEPPYFTAEPESRISAE-VEET 403

Query: 121 IDISGEPQFLELMQLKYHEKA 141
           +DI  +   + L  L++++ A
Sbjct: 404 VDIGCQAMGVPLPTLQWYKDA 424


>gi|239788483 dihydrouridine synthase 3-like isoform 2 [Homo
           sapiens]
          Length = 408

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 219 LKPVPLIGPKLKRRWPIS------YCRELKGYSIPFMGSDVSVVRRTQRYLYE 265
           LKP      K +R W IS        R+   Y +   GSD   V +T+R+L E
Sbjct: 283 LKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLE 335


>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
          Length = 2390

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 326  PTQKQIDAASFTLTFFGQGYSQGTGTDKNKPNIKICTQVKGPEAGYVATPIAMVQAAMTL 385
            P+Q  +       + F +G   G+G + N P  +  T+ +GP       P AM Q+  T 
Sbjct: 2148 PSQPLLGQQRLEHSSFPEGPGPGSGDEANGPRGERQTRTRGP------APSAMPQSRSTE 2201

Query: 386  LSDASHLPKAG 396
             + A+ LP  G
Sbjct: 2202 SAHAATLPPRG 2212


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,637,784
Number of Sequences: 37866
Number of extensions: 685799
Number of successful extensions: 1279
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 7
length of query: 429
length of database: 18,247,518
effective HSP length: 105
effective length of query: 324
effective length of database: 14,271,588
effective search space: 4623994512
effective search space used: 4623994512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.