Search of human proteins with 55741575

Search of human proteins with 55741575

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55741575 hypothetical protein LOC492307 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55741575 hypothetical protein LOC492307 [Homo sapiens]             164   1e-41
gi|13236524 pancreatic progenitor cell differentiation and proli...    40   4e-04
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]    28   1.2  
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H...    28   1.6  
gi|109633041 protein tyrosine phosphatase, receptor type, F isof...    27   3.5  
gi|109633039 protein tyrosine phosphatase, receptor type, F isof...    27   3.5  
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo...    27   4.6  
gi|104487006 protein tyrosine phosphatase, receptor type, sigma ...    26   6.0  
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]                 26   6.0  
gi|104487611 protein tyrosine phosphatase, receptor type, sigma ...    26   7.8  
gi|104487297 protein tyrosine phosphatase, receptor type, sigma ...    26   7.8  
gi|104487295 protein tyrosine phosphatase, receptor type, sigma ...    26   7.8  
gi|45439370 TAO kinase 1 [Homo sapiens]                                26   7.8  

>gi|55741575 hypothetical protein LOC492307 [Homo sapiens]
          Length = 81

 Score =  164 bits (415), Expect = 1e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MASVPSIGCLLARNQYYRKSSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKSFF 60
          MASVPSIGCLLARNQYYRKSSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKSFF
Sbjct: 1  MASVPSIGCLLARNQYYRKSSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKSFF 60

Query: 61 HSEPVLSNVRIKDLSATGMNS 81
          HSEPVLSNVRIKDLSATGMNS
Sbjct: 61 HSEPVLSNVRIKDLSATGMNS 81


>gi|13236524 pancreatic progenitor cell differentiation and
          proliferation factor homolog [Homo sapiens]
          Length = 114

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 1  MASVPSIGCLLARNQYYRK--SSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKS 58
          MA++PS G L+A + YYR+   S SS SS +S++         P  GLP+     WW   
Sbjct: 1  MAAIPSSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPP--GLPKADPGHWWASF 58

Query: 59 FF 60
          FF
Sbjct: 59 FF 60


>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
          Length = 1379

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 11  LARNQYYRKSSVSSVSSLTSSDSVNFIDDDKPQQGLP 47
           LA   + R SSVSSVSS  S DS       +P+QG P
Sbjct: 859 LAAFGFVRSSSVSSVSSTQSGDSA------QPEQGRP 889


>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo
           sapiens]
          Length = 524

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 34  VNFIDDDKPQQGLPEVAESTWWFKSFFHSEPVLSNVRIKDLS 75
           ++F +DD  ++G+ E   STWW+       P +S  R+  LS
Sbjct: 206 IDFGEDDNLEEGVLEQGGSTWWWG---RKTPHISPQRLPSLS 244


>gi|109633041 protein tyrosine phosphatase, receptor type, F isoform
           1 precursor [Homo sapiens]
          Length = 1907

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 47  PEVAESTWWFKSFFHSEPVLSNVRIKDL 74
           PE++    WFK F   +P  SN RIK L
Sbjct: 164 PEIS----WFKDFLPVDPATSNGRIKQL 187


>gi|109633039 protein tyrosine phosphatase, receptor type, F isoform
           2 precursor [Homo sapiens]
          Length = 1898

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 47  PEVAESTWWFKSFFHSEPVLSNVRIKDL 74
           PE++    WFK F   +P  SN RIK L
Sbjct: 164 PEIS----WFKDFLPVDPATSNGRIKQL 187


>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
           sapiens]
          Length = 323

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 19  KSSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAE 51
           KSS SS SS TSS + +    DK Q   PE+ +
Sbjct: 76  KSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQ 108


>gi|104487006 protein tyrosine phosphatase, receptor type, sigma
           isoform 1 precursor [Homo sapiens]
          Length = 1948

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 55  WFKSFFHSEPVLSNVRIKDLSATGMNS 81
           WFK F   +P  SN RIK L +    S
Sbjct: 168 WFKDFLPVDPSASNGRIKQLRSETFES 194


>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
          Length = 775

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 20  SSVSSVSSLTSSDSVNFIDDDKPQQG--LPEVAESTW 54
           +S+ + +SLTS+     ++DD+P +G   P+  E++W
Sbjct: 99  TSLDTAASLTSTKGEFGVEDDRPARGPPPPKSEEASW 135


>gi|104487611 protein tyrosine phosphatase, receptor type, sigma
           isoform 4 precursor [Homo sapiens]
          Length = 1505

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 55  WFKSFFHSEPVLSNVRIKDL 74
           WFK F   +P  SN RIK L
Sbjct: 168 WFKDFLPVDPSASNGRIKQL 187


>gi|104487297 protein tyrosine phosphatase, receptor type, sigma
           isoform 2 precursor [Homo sapiens]
          Length = 1910

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 55  WFKSFFHSEPVLSNVRIKDL 74
           WFK F   +P  SN RIK L
Sbjct: 168 WFKDFLPVDPSASNGRIKQL 187


>gi|104487295 protein tyrosine phosphatase, receptor type, sigma
           isoform 3 precursor [Homo sapiens]
          Length = 1501

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 55  WFKSFFHSEPVLSNVRIKDL 74
           WFK F   +P  SN RIK L
Sbjct: 168 WFKDFLPVDPSASNGRIKQL 187


>gi|45439370 TAO kinase 1 [Homo sapiens]
          Length = 1001

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 14  NQYYRKSSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKSFFHSEPVLSNVR 70
           NQ     S+S+ S  +S +S+  + DDK +  + E   +     S  H +P   N R
Sbjct: 351 NQSIPSMSISASSQSSSVNSLPDVSDDKSELDMMEGDHTVMSNSSVIHLKPEEENYR 407


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.125    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,702,733
Number of Sequences: 37866
Number of extensions: 86584
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.