Guide to the Human Genome
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Name: SLC35A1 Sequence: fasta or formatted (337aa) NCBI GI: 5453621
Description:

solute carrier family 35 (CMP-sialic acid transporter), member A1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         32           4
 C cysteine            2.1          7           1
 D aspartate           2.1          7           1
 E glutamate           3.3         11           1
 F phenylalanine       4.5         15           2
 G glycine             6.5         22           2
 H histidine           0.0          0           0
 I isoleucine          5.6         19           2
 K lysine              5.3         18           1
 L leucine            14.2         48           3
 M methionine          2.7          9           1
 N asparagine          2.7          9           2
 P proline             2.1          7           1
 Q glutamine           3.6         12           2
 R arginine            2.7          9           1
 S serine              7.4         25           2
 T threonine           8.0         27           2
 V valine             11.3         38           3
 W tryptophan          1.2          4           1
 Y tyrosine            5.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35 (CMP-sialic acid transporter... 
SLC35A2               0.390   solute carrier family 35, member A2 isoform c [Homo...
SLC35A2               0.390   solute carrier family 35, member A2 isoform a 
SLC35A3               0.339   solute carrier family 35 member 3A 
SLC35A5               0.120   solute carrier family 35, member A5 
SLC35A4               0.110   solute carrier family 35, member A4 
SLC35A2               0.082   solute carrier family 35, member A2 isoform b 
LOC728661             0.032   similar to solute carrier family 35, member E2 [Hom...
SLC35C1               0.019   GDP-fucose transporter 1 isoform a 
SLC35C1               0.019   GDP-fucose transporter 1 isoform b 
SLC35C1               0.019   GDP-fucose transporter 1 isoform b 
SLC35B4               0.016   solute carrier family 35, member B4 
C2orf18               0.011   ANT2-binding protein 
SLC35B1               0.011   solute carrier family 35, member B1 
THEM4                 0.010   thioesterase superfamily member 4 
ALDH1L2               0.010   aldehyde dehydrogenase 1 family, member L2 
ABCB11                0.006   ATP-binding cassette, sub-family B (MDR/TAP), member...
RXFP2                 0.006   relaxin/insulin-like family peptide receptor 2 [Homo...
ND2                   0.005   NADH dehydrogenase subunit 2 
ND2                   0.005   NADH dehydrogenase subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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