Guide to the Human Genome
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Name: OR5M1 Sequence: fasta or formatted (315aa) NCBI GI: 52317124
Description:

olfactory receptor, family 5, subfamily M, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         19           2
 C cysteine            3.8         12           1
 D aspartate           2.2          7           2
 E glutamate           2.9          9           2
 F phenylalanine       8.9         28           2
 G glycine             3.8         12           1
 H histidine           3.2         10           1
 I isoleucine          8.9         28           2
 K lysine              3.2         10           2
 L leucine            13.7         43           2
 M methionine          4.4         14           1
 N asparagine          3.5         11           1
 P proline             3.8         12           2
 Q glutamine           1.9          6           2
 R arginine            3.2         10           1
 S serine              9.8         31           3
 T threonine           6.3         20           1
 V valine              5.7         18           2
 W tryptophan          0.0          0           0
 Y tyrosine            4.8         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 5, subfamily M, member 1 ... 
OR5M10                0.954   olfactory receptor, family 5, subfamily M, member 10...
OR5M11                0.658   olfactory receptor, family 5, subfamily M, member 11...
OR5M8                 0.612   olfactory receptor, family 5, subfamily M, member 8 ...
OR5M3                 0.567   olfactory receptor, family 5, subfamily M, member 3 ...
OR5M9                 0.562   olfactory receptor, family 5, subfamily M, member 9 ...
OR5R1                 0.516   olfactory receptor, family 5, subfamily R, member 1 ...
OR5AR1                0.504   olfactory receptor, family 5, subfamily AR, member 1...
OR8U1                 0.504   olfactory receptor, family 8, subfamily U, member 1 ...
OR8U8                 0.498   olfactory receptor, family 8, subfamily U, member 8 ...
OR8U9                 0.496   olfactory receptor, family 8, subfamily U, member 9 ...
OR5B21                0.486   olfactory receptor, family 5, subfamily B, member 21...
OR5B12                0.484   olfactory receptor, family 5, subfamily B, member 12...
OR9G4                 0.481   olfactory receptor, family 9, subfamily G, member 4 ...
OR8D4                 0.463   olfactory receptor, family 8, subfamily D, member 4 ...
OR5A2                 0.463   olfactory receptor, family 5, subfamily A, member 2 ...
OR5AP2                0.456   olfactory receptor, family 5, subfamily AP, member 2...
OR8D1                 0.456   olfactory receptor, family 8, subfamily D, member 1 ...
OR5F1                 0.453   olfactory receptor, family 5, subfamily F, member 1 ...
OR8I2                 0.448   olfactory receptor, family 8, subfamily I, member 2 ...
OR5I1                 0.448   olfactory receptor, family 5, subfamily I, member 1 [...
OR5AS1                0.446   olfactory receptor, family 5, subfamily AS, member 1...
OR8K5                 0.446   olfactory receptor, family 8, subfamily K, member 5...
OR8D2                 0.445   olfactory receptor, family 8, subfamily D, member 2 ...
OR8A1                 0.445   olfactory receptor, family 8, subfamily A, member 1 ...
OR8K1                 0.445   olfactory receptor, family 8, subfamily K, member 1 ...
OR8B3                 0.445   olfactory receptor, family 8, subfamily B, member 3 ...
OR8K3                 0.443   olfactory receptor, family 8, subfamily K, member 3 ...
OR5A1                 0.443   olfactory receptor, family 5, subfamily A, member 1 ...
OR5AU1                0.443   olfactory receptor, family 5, subfamily AU, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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