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Search of human proteins with 51558774
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51558774 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform a precursor [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51558774 ATP synthase, H+ transporting, mitochondrial F0 comp... 451 e-127
gi|51558777 ATP synthase, H+ transporting, mitochondrial F0 comp... 267 4e-72
gi|51558768 ATP synthase, H+ transporting, mitochondrial F0 comp... 265 2e-71
gi|8922303 ATP5S-like [Homo sapiens] 69 3e-12
gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens] 34 0.082
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 33 0.24
gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens] 33 0.24
gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens] 30 1.2
gi|55770862 thyroglobulin [Homo sapiens] 30 2.0
gi|239757471 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo ... 30 2.0
gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo ... 30 2.0
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 29 3.5
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 29 3.5
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 28 4.5
gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens] 28 5.9
gi|14196445 calcium/calmodulin-dependent protein kinase IG [Homo... 28 5.9
>gi|51558774 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform a precursor [Homo sapiens]
Length = 215
Score = 451 bits (1160), Expect = e-127
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
Query: 121 EGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNL 180
EGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNL
Sbjct: 121 EGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNL 180
Query: 181 KYLLLSDLPGVREKENLVQAFKTALPSLELKLQLK 215
KYLLLSDLPGVREKENLVQAFKTALPSLELKLQLK
Sbjct: 181 KYLLLSDLPGVREKENLVQAFKTALPSLELKLQLK 215
>gi|51558777 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform b precursor [Homo sapiens]
Length = 127
Score = 267 bits (683), Expect = 4e-72
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
Query: 121 E 121
E
Sbjct: 121 E 121
>gi|51558768 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform c precursor [Homo sapiens]
Length = 136
Score = 265 bits (678), Expect = 2e-71
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
>gi|8922303 ATP5S-like [Homo sapiens]
Length = 257
Score = 68.9 bits (167), Expect = 3e-12
Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKD-YNHLPTGPLD--KYKIQAIDATDSCIMSIGF 117
GP A + ++L+ G V++ +E + D Y H + + ++A+DA D I G
Sbjct: 82 GPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGL 141
Query: 118 DHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHL 177
D++ L+ ++ + L +C +++D CL RL L + ++ E+ + C I+++G+ L HL
Sbjct: 142 DNLLRLKELQSLSLQRCSHVDDWCLSRLYPLAD---SLQELSLAGCPRISERGLACLHHL 198
Query: 178 RNLKYLLLSDLPGVREKENLVQAFKTALPSLEL 210
+NL+ L +SDLP V + LP+ E+
Sbjct: 199 QNLRRLDISDLPAVSNPGLTQILVEEMLPNCEV 231
>gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens]
Length = 418
Score = 34.3 bits (77), Expect = 0.082
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 121 EGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGI-IALRHLRN 179
+GL+ ++ + LC CH +D + Q+ L+ + I C ITDKG+ + HL
Sbjct: 302 QGLDGLKSLSLCSCHISDDGINRMVRQMHGLR----TLNIGQCVRITDKGLELIAEHLSQ 357
Query: 180 L 180
L
Sbjct: 358 L 358
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 112 IMSIGFDHMEGLEH--------VEKIRLCKCHYIEDDCLLRLSQ-LENLQKTILEMEIIS 162
+ +G H+ G+ +E++ L C + D L +S+ L L+ L
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSF---- 237
Query: 163 CGNITDKGIIALRHLRNLKYLLLSDLPGVRE 193
CG I+D G++ L H+ +L+ L L + +
Sbjct: 238 CGGISDAGLLHLSHMGSLRSLNLRSCDNISD 268
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 122 GLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIAL 174
GL + + L C I D LL LS + +L+ + + SC NI+D GI+ L
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRS----LNLRSCDNISDTGIMHL 274
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 32.7 bits (73), Expect = 0.24
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 139 DDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNLKYLLLSD 187
D+CL ++E L T E+E +S N+ + L L L+ L LSD
Sbjct: 25 DNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSD 73
>gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens]
Length = 423
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 120 MEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIAL-RHLR 178
+ G ++ + L C +ED+ L ++N ++ + + SC ITD+G++ + R
Sbjct: 178 VRGCRGLKALLLRGCTQLEDEAL---KHIQNYCHELVSLNLQSCSRITDEGVVQICRGCH 234
Query: 179 NLKYLLLSDLPGVREKENLVQAFKTAL 205
L+ L LS NL A TAL
Sbjct: 235 RLQALCLSGC------SNLTDASLTAL 255
Score = 31.2 bits (69), Expect = 0.70
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 103 QAIDATDSCIMSIGFDHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIIS 162
+ I TDS ++ + ++ + L C I DD +L LS + + +E+ +
Sbjct: 295 ECILITDSTLIQLSIH----CPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDN 350
Query: 163 CGNITDKGIIALRHLRNLKYL 183
C ITD +AL HL N + L
Sbjct: 351 CLLITD---VALEHLENCRGL 368
>gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens]
Length = 491
Score = 30.4 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 126 VEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGI-IALRHLRNLKYLL 184
++++ + C ++ D L +++LE+ + + I CG +TD GI ++ L+YL
Sbjct: 326 IKELSVSDCRFVSDFGLREIAKLES---RLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLN 382
Query: 185 LSDLPGVRE 193
G+ +
Sbjct: 383 ARGCEGITD 391
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 35 SCDSRYFWGWLNAVFNKVDYDRIRD-VGPDRAASEWLLRCGAMVRYHGQE 83
SCD F+ W + + D+ RD +G +A S LRC VR HGQ+
Sbjct: 1626 SCD---FYAWTSDNVACMTSDQKRDALGNSKATSFGSLRCQVKVRSHGQD 1672
>gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 28.9 bits (63), Expect = 3.5
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 118 DHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQK----------TILEMEIISCGNIT 167
+ M+ E K+ + +E D +LR QLE ++K I +E C N T
Sbjct: 2425 ESMKNTEDERKVNELQNQPLELDTMLRNEQLEEIEKLYTQLEAKKAAIKPLEQTECLNKT 2484
Query: 168 DKGIIAL-------RHLRNLKYLLLSDLPGVREKENLVQAFKTALPSLELKLQ 213
+ G + L +HL NL L++ + +++ F+ L ++E ++
Sbjct: 2485 ETGALVLHNIGYSAQHLDNLLQALITLKKNKESQYCVLRDFQEYLAAVESSMK 2537
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 28.9 bits (63), Expect = 3.5
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 118 DHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQK----------TILEMEIISCGNIT 167
+ M+ E K+ + +E D +LR QLE ++K I +E C N T
Sbjct: 2425 ESMKNTEDERKVNELQNQPLELDTMLRNEQLEEIEKLYTQLEAKKAAIKPLEQTECLNKT 2484
Query: 168 DKGIIAL-------RHLRNLKYLLLSDLPGVREKENLVQAFKTALPSLELKLQ 213
+ G + L +HL NL L++ + +++ F+ L ++E ++
Sbjct: 2485 ETGALVLHNIGYSAQHLDNLLQALITLKKNKESQYCVLRDFQEYLAAVESSMK 2537
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 28.5 bits (62), Expect = 4.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 139 DDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNLKYLLLSDL 188
D+CL ++E L T E+E +S N+ + L L L+ L +L
Sbjct: 25 DNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKQNLKNL 74
>gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens]
Length = 436
Score = 28.1 bits (61), Expect = 5.9
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 103 QAIDATDSCIMSIGFDHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIIS 162
+ + TDS ++ + ++ + L C I DD + L + +E+ +
Sbjct: 308 ECVQITDSTLIQLSIH----CPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDN 363
Query: 163 CGNITDKGIIALRHLRNLKYLLLSDLPGVREKENLVQAFKTALPSLEL 210
C ITD + L+ +L+ + L D + ++ +T LP++++
Sbjct: 364 CPLITDASLEHLKSCHSLERIELYDCQQITRAG--IKRLRTHLPNIKV 409
>gi|14196445 calcium/calmodulin-dependent protein kinase IG [Homo
sapiens]
Length = 476
Score = 28.1 bits (61), Expect = 5.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 138 EDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALR 175
EDDC Q N++KT + ME++ G ++ ++ R
Sbjct: 6 EDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQR 43
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,202,032
Number of Sequences: 37866
Number of extensions: 340699
Number of successful extensions: 896
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 24
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.