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Search of human proteins with 51558768
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51558768 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform c precursor [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51558768 ATP synthase, H+ transporting, mitochondrial F0 comp... 297 2e-81
gi|51558777 ATP synthase, H+ transporting, mitochondrial F0 comp... 265 7e-72
gi|51558774 ATP synthase, H+ transporting, mitochondrial F0 comp... 265 7e-72
gi|157819143 IgLON family member 5 [Homo sapiens] 30 0.61
gi|55770862 thyroglobulin [Homo sapiens] 30 0.79
gi|239757471 PREDICTED: hypothetical protein [Homo sapiens] 30 0.79
gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo ... 30 0.79
gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo ... 30 0.79
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 28 3.0
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 27 3.9
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 27 3.9
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 27 3.9
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens] 26 8.8
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 26 8.8
gi|74099704 sulfite oxidase [Homo sapiens] 26 8.8
gi|74099702 sulfite oxidase [Homo sapiens] 26 8.8
gi|74099694 sulfite oxidase [Homo sapiens] 26 8.8
gi|34915994 transducin-like enhancer protein 4 [Homo sapiens] 26 8.8
>gi|51558768 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform c precursor [Homo sapiens]
Length = 136
Score = 297 bits (760), Expect = 2e-81
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
Query: 121 GNYPIVLLIENADDLQ 136
GNYPIVLLIENADDLQ
Sbjct: 121 GNYPIVLLIENADDLQ 136
>gi|51558777 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform b precursor [Homo sapiens]
Length = 127
Score = 265 bits (678), Expect = 7e-72
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
>gi|51558774 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit s isoform a precursor [Homo sapiens]
Length = 215
Score = 265 bits (678), Expect = 7e-72
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
Sbjct: 1 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV 60
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
Sbjct: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM 120
>gi|157819143 IgLON family member 5 [Homo sapiens]
Length = 336
Score = 30.0 bits (66), Expect = 0.61
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 70 LLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIM--SIGFDHMGNY 123
LLRC AM +W KD L +G + K+Q + T S ++ ++ H GNY
Sbjct: 235 LLRCEAMAVPPADFQWYKDDRLLSSGTAEGLKVQT-ERTRSMLLFANVSARHYGNY 289
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 29.6 bits (65), Expect = 0.79
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 35 SCDSRYFWGWLNAVFNKVDYDRIRD-VGPDRAASEWLLRCGAMVRYHGQE 83
SCD F+ W + + D+ RD +G +A S LRC VR HGQ+
Sbjct: 1626 SCD---FYAWTSDNVACMTSDQKRDALGNSKATSFGSLRCQVKVRSHGQD 1672
>gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.79
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.79
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.79
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 VSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYF 41
V+E L C + + +I+ +LCG P C SR F
Sbjct: 138 VTEPMLVCCREWLTSHQITSELCGQPPCPLCCQSRAF 174
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 27.7 bits (60), Expect = 3.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 88 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMGNYPIVLLIE 130
D+ ++P +++Y +D D+ FDH GN P+ + E
Sbjct: 618 DFKYIPYKFMNRYNGAMMDVWDAHYKMFWFDHHGNSPMASIQE 660
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 63 DRAASEWLLRCGAMVRYHGQERWQKDYNH 91
DR AS WL CGA+ G DYNH
Sbjct: 250 DREASWWLCECGAL----GMSDRVGDYNH 274
>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
Length = 1547
Score = 26.2 bits (56), Expect = 8.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 74 GAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMGNYPIVLLIENAD 133
G ++ HG+ R QKD H +D + I+ +D ++ +G G I L++ +
Sbjct: 555 GLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMG---SGTIKIKALLKKVN 611
Query: 134 D 134
D
Sbjct: 612 D 612
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 26.2 bits (56), Expect = 8.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 74 GAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMGNYPIVLLIENAD 133
G ++ HG+ R QKD H +D + I+ +D ++ +G G I L++ +
Sbjct: 515 GLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMG---SGTIKIKALLKKVN 571
Query: 134 D 134
D
Sbjct: 572 D 572
>gi|74099704 sulfite oxidase [Homo sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 90 NHLPTGPLDK--YKIQAIDATDSCIMSIGFDHMGNYP 124
NHLP LD Y++ + A +S+ D + N+P
Sbjct: 218 NHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHNFP 254
>gi|74099702 sulfite oxidase [Homo sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 90 NHLPTGPLDK--YKIQAIDATDSCIMSIGFDHMGNYP 124
NHLP LD Y++ + A +S+ D + N+P
Sbjct: 218 NHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHNFP 254
>gi|74099694 sulfite oxidase [Homo sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 90 NHLPTGPLDK--YKIQAIDATDSCIMSIGFDHMGNYP 124
NHLP LD Y++ + A +S+ D + N+P
Sbjct: 218 NHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHNFP 254
>gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]
Length = 773
Score = 26.2 bits (56), Expect = 8.8
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 61 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGP-----LDKYKIQAIDAT------- 108
G D W LR G ++ H + PTG ++ ++ + T
Sbjct: 638 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHVTKPDKYQL 697
Query: 109 ---DSCIMSIGFDHMGNY 123
+SC++S+ F H G +
Sbjct: 698 HLHESCVLSLKFAHCGKW 715
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,443,335
Number of Sequences: 37866
Number of extensions: 215176
Number of successful extensions: 457
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 18
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.