Guide to the Human Genome
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Name: TYW1 Sequence: fasta or formatted (732aa) NCBI GI: 50726981
Description:

radical S-adenosyl methionine and flavodoxin domains 1

Referenced in:

Cytochrome P450 Enzymes
tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         44           2
 C cysteine            2.6         19           1
 D aspartate           4.9         36           2
 E glutamate           9.0         66           4
 F phenylalanine       4.6         34           1
 G glycine             7.0         51           2
 H histidine           3.8         28           2
 I isoleucine          4.9         36           2
 K lysine              8.2         60           2
 L leucine             7.9         58           2
 M methionine          2.3         17           1
 N asparagine          3.1         23           1
 P proline             3.0         22           1
 Q glutamine           4.2         31           2
 R arginine            4.6         34           2
 S serine              7.2         53           3
 T threonine           4.6         34           2
 V valine              6.3         46           2
 W tryptophan          2.6         19           2
 Y tyrosine            2.9         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radical S-adenosyl methionine and flavodoxin domains... 
TYW1B                 0.839   tRNA-yW synthesizing protein 1 homolog B isoform 1 ...
TYW1B                 0.433   tRNA-yW synthesizing protein 1 homolog B isoform 2 ...
POR                   0.054   cytochrome P450 reductase 
NOS1                  0.015   nitric oxide synthase 1, neuronal 
NOS3                  0.015   nitric oxide synthase 3 isoform 1 
NDOR1                 0.015   NADPH dependent diflavin oxidoreductase 1 isoform d...
NDOR1                 0.015   NADPH dependent diflavin oxidoreductase 1 isoform c...
NDOR1                 0.015   NADPH dependent diflavin oxidoreductase 1 isoform a...
NDOR1                 0.015   NADPH dependent diflavin oxidoreductase 1 isoform b [...
MTRR                  0.015   methionine synthase reductase isoform 1 
MTRR                  0.015   methionine synthase reductase isoform 2 
RPGR                  0.013   retinitis pigmentosa GTPase regulator isoform C [Hom...
POLR1A                0.013   DNA-directed RNA polymerase I A 
CDC2L2                0.011   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.011   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.011   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ANP32A                0.010   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LOC647020             0.009   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.009   PREDICTED: similar to acidic (leucine-rich) nuclear...
ANP32E                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
KIF21B                0.009   kinesin family member 21B 
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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