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Search of human proteins with 50593002
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50593002 small nuclear ribonucleoprotein polypeptide A'
[Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo... 500 e-142
gi|239754500 PREDICTED: Leucine-rich repeat-containing protein E... 61 8e-10
gi|239749060 PREDICTED: Leucine-rich repeat-containing protein E... 61 8e-10
gi|239743086 PREDICTED: Leucine-rich repeat-containing protein E... 61 8e-10
gi|239508737 PREDICTED: Leucine-rich repeat-containing protein E... 61 8e-10
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 61 8e-10
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 59 3e-09
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 59 3e-09
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 58 7e-09
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 58 7e-09
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 58 7e-09
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 58 7e-09
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 57 1e-08
gi|14042939 chromosome 10 open reading frame 11 [Homo sapiens] 57 1e-08
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 56 3e-08
gi|21389483 leucine-rich repeats and guanylate kinase domain con... 56 3e-08
gi|31377705 centrosomal protein 97kDa [Homo sapiens] 56 3e-08
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 55 5e-08
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 55 5e-08
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 55 5e-08
gi|31621309 leucine rich repeat containing 6 [Homo sapiens] 54 2e-07
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 51 1e-06
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 50 2e-06
gi|157674358 leucine rich repeat containing 50 [Homo sapiens] 48 9e-06
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 47 2e-05
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 47 2e-05
gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens] 45 5e-05
gi|21687175 leucine rich transmembrane and 0-methyltransferase d... 45 5e-05
gi|218931217 leucine rich repeat containing 61 [Homo sapiens] 45 5e-05
gi|13027616 leucine rich repeat containing 61 [Homo sapiens] 45 5e-05
>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
sapiens]
Length = 255
Score = 500 bits (1287), Expect = e-142
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120
Query: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180
LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180
Query: 181 FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD 240
FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD
Sbjct: 181 FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD 240
Query: 241 DGEEEMEEDTVTNGS 255
DGEEEMEEDTVTNGS
Sbjct: 241 DGEEEMEEDTVTNGS 255
>gi|239754500 PREDICTED: Leucine-rich repeat-containing protein
ENSP00000371558 [Homo sapiens]
Length = 336
Score = 61.2 bits (147), Expect = 8e-10
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 41 LDQFDAIDFSDNEIRKLDGFPLLRR---LKTLLVNNNRICRIGEGLDQALPCLTELILTN 97
L +F + + KL G L R L L +NNN I I EGL LP L L+L +
Sbjct: 112 LSRFKKLKYLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEI-EGLHY-LPSLHILLLHH 169
Query: 98 NSLVEL-GDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156
N L + + L + +L LS+ +NP+ YRLY+IY +P V +LD +V KER+
Sbjct: 170 NELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERR 229
Query: 157 EAEKMFKGKRGAQLAKDIA 175
+F K+ A + + IA
Sbjct: 230 SMITIFNHKK-AHIVQSIA 247
>gi|239749060 PREDICTED: Leucine-rich repeat-containing protein
ENSP00000371558 [Homo sapiens]
Length = 336
Score = 61.2 bits (147), Expect = 8e-10
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 41 LDQFDAIDFSDNEIRKLDGFPLLRR---LKTLLVNNNRICRIGEGLDQALPCLTELILTN 97
L +F + + KL G L R L L +NNN I I EGL LP L L+L +
Sbjct: 112 LSRFKKLKYLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEI-EGLHY-LPSLHILLLHH 169
Query: 98 NSLVEL-GDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156
N L + + L + +L LS+ +NP+ YRLY+IY +P V +LD +V KER+
Sbjct: 170 NELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERR 229
Query: 157 EAEKMFKGKRGAQLAKDIA 175
+F K+ A + + IA
Sbjct: 230 SMITIFNHKK-AHIVQSIA 247
>gi|239743086 PREDICTED: Leucine-rich repeat-containing protein
ENSP00000371558 [Homo sapiens]
Length = 336
Score = 61.2 bits (147), Expect = 8e-10
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 41 LDQFDAIDFSDNEIRKLDGFPLLRR---LKTLLVNNNRICRIGEGLDQALPCLTELILTN 97
L +F + + KL G L R L L +NNN I I EGL LP L L+L +
Sbjct: 112 LSRFKKLKYLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEI-EGLHY-LPSLHILLLHH 169
Query: 98 NSLVEL-GDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156
N L + + L + +L LS+ +NP+ YRLY+IY +P V +LD +V KER+
Sbjct: 170 NELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERR 229
Query: 157 EAEKMFKGKRGAQLAKDIA 175
+F K+ A + + IA
Sbjct: 230 SMITIFNHKK-AHIVQSIA 247
>gi|239508737 PREDICTED: Leucine-rich repeat-containing protein
ENSP00000371558 [Homo sapiens]
Length = 336
Score = 61.2 bits (147), Expect = 8e-10
Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 41 LDQFDAIDFSDNEIRKLDGFPLLRR---LKTLLVNNNRICRIGEGLDQALPCLTELILTN 97
L +F + + KL G L R L L +NNN I I EGL LP L L+L +
Sbjct: 112 LSRFKKLKYLWLHHNKLHGITFLTRNYCLTELYLNNNAIFEI-EGLHY-LPSLHILLLHH 169
Query: 98 NSLVEL-GDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156
N L + + L + +L LS+ +NP+ YRLY+IY +P V +LD +V KER+
Sbjct: 170 NELTNIDATVKELKGMLNLKILSLYQNPLCQYNLYRLYIIYHLPGVELLDRNQVTEKERR 229
Query: 157 EAEKMFKGKRGAQLAKDIA 175
+F K+ A + + IA
Sbjct: 230 SMITIFNHKK-AHIVQSIA 247
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 61.2 bits (147), Expect = 8e-10
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
L+L I IE L L + ++ S N+I K++G + L+ L + N I I L
Sbjct: 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWL 188
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
+ L L L L N + L D+ L L+ L L ++ NPV HY + I+ + +
Sbjct: 189 GKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLE 248
Query: 144 VLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARR 177
L+ Q V ++RQEA + F + +L +D+ ++
Sbjct: 249 SLEGQPVTTQDRQEAFERFSLEEVERLERDLEKK 282
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 59.3 bits (142), Expect = 3e-09
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
++LRG ++ LG L + + + N ++K++G L L TL + +N+I + G
Sbjct: 184 VELRGNQLE--STLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS-GF 240
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
+ + L L L N + LG+L L L L L +L NP T++ YR + ++P +
Sbjct: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
Query: 144 VLDFQKVKLKERQEAE 159
LD + + +ER EA+
Sbjct: 301 RLDKEFYEEEERAEAD 316
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 59.3 bits (142), Expect = 3e-09
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
++LRG ++ LG L + + + N ++K++G L L TL + +N+I + G
Sbjct: 184 VELRGNQLE--STLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS-GF 240
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
+ + L L L N + LG+L L L L L +L NP T++ YR + ++P +
Sbjct: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
Query: 144 VLDFQKVKLKERQEAE 159
LD + + +ER EA+
Sbjct: 301 RLDKEFYEEEERAEAD 316
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 58.2 bits (139), Expect = 7e-09
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
R+L L I IE L L +D S N I ++G L L+ L + NNRI +I +
Sbjct: 68 RKLQLDNNIIEKIEGL-ENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKI-D 125
Query: 82 GLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQ 141
LD AL L L L NN + + ++ L K L LS+ RNP++ + Y++++ +P
Sbjct: 126 SLD-ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPD 184
Query: 142 VRVLDFQKVKLKERQEAE 159
+ LD++++ ++ AE
Sbjct: 185 LMYLDYRRIDDHTKKLAE 202
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 58.2 bits (139), Expect = 7e-09
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
R+L L I IE L L +D S N I ++G L L+ L + NNRI +I +
Sbjct: 68 RKLQLDNNIIEKIEGL-ENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKI-D 125
Query: 82 GLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQ 141
LD AL L L L NN + + ++ L K L LS+ RNP++ + Y++++ +P
Sbjct: 126 SLD-ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPD 184
Query: 142 VRVLDFQKVKLKERQEAE 159
+ LD++++ ++ AE
Sbjct: 185 LMYLDYRRIDDHTKKLAE 202
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 58.2 bits (139), Expect = 7e-09
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
R+L L I IE L L +D S N I ++G L L+ L + NNRI +I +
Sbjct: 68 RKLQLDNNIIEKIEGL-ENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKI-D 125
Query: 82 GLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQ 141
LD AL L L L NN + + ++ L K L LS+ RNP++ + Y++++ +P
Sbjct: 126 SLD-ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPD 184
Query: 142 VRVLDFQKVKLKERQEAE 159
+ LD++++ ++ AE
Sbjct: 185 LMYLDYRRIDDHTKKLAE 202
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 58.2 bits (139), Expect = 7e-09
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
R+L L I IE L L +D S N I ++G L L+ L + NNRI +I +
Sbjct: 68 RKLQLDNNIIEKIEGL-ENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKI-D 125
Query: 82 GLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQ 141
LD AL L L L NN + + ++ L K L LS+ RNP++ + Y++++ +P
Sbjct: 126 SLD-ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPD 184
Query: 142 VRVLDFQKVKLKERQEAE 159
+ LD++++ ++ AE
Sbjct: 185 LMYLDYRRIDDHTKKLAE 202
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 57.4 bits (137), Expect = 1e-08
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 12/250 (4%)
Query: 3 KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
K+ EL ++ + T V D L + G IE L T + + + ++ E+ L P
Sbjct: 6 KINLELRNRSPEEVTELVLDNCLCVNGE----IEGLNDTFKELEFLSMANVELSSLARLP 61
Query: 62 LLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSIL 121
L +L+ L +++N I E L + P LT L L+ N + +L ++ L +LK+L L +
Sbjct: 62 SLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLKNLKSLDLF 121
Query: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTF 181
+TN + YR + + Q+ LD + E ++E+ + G + D
Sbjct: 122 NCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEE-DDEDGDE--DDEEEEENEA 178
Query: 182 NPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGL--LQSGQIPGRERRSGPT 239
P G ++++ D + ++ S L E E GL L +I E
Sbjct: 179 GPPEGYEEEEEEEEEEDEDEDEDEDEA--GSELGEGEEEVGLSYLMKEEIQDEEDDDDYV 236
Query: 240 DDGEEEMEED 249
++GEEE EE+
Sbjct: 237 EEGEEEEEEE 246
>gi|14042939 chromosome 10 open reading frame 11 [Homo sapiens]
Length = 198
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 18/119 (15%)
Query: 55 RKLDGFPLLRRLKTLLVNNNRICRIGEGLD-QALPCLTELILTNNSLVELGDL-DPLASL 112
R L+G R L+ L+++NN++ G+ L LP L L L N + +L +L D LA +
Sbjct: 16 RSLEGLSAFRSLEELILDNNQL---GDDLVLPGLPRLHTLTLNKNRITDLENLLDHLAEV 72
Query: 113 K-SLTYLSILRNPVT------------NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
+L YLS+L N + K YR +V+YK+P ++ LD QKV +ER+EA
Sbjct: 73 TPALEYLSLLGNVACPNELVSLEKDEEDYKRYRCFVLYKLPNLKFLDAQKVTRQEREEA 131
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 56.2 bits (134), Expect = 3e-08
Identities = 42/129 (32%), Positives = 61/129 (47%)
Query: 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 77
AVR+ LD IE L A + + + + + P L +LK L ++ NRI
Sbjct: 18 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 77
Query: 78 RIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIY 137
+ L + LP LT L L+ N L ++ L+PL L+ L L + VTN YR V
Sbjct: 78 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 137
Query: 138 KVPQVRVLD 146
+PQ+ LD
Sbjct: 138 LLPQLTYLD 146
>gi|21389483 leucine-rich repeats and guanylate kinase domain
containing [Homo sapiens]
Length = 825
Score = 56.2 bits (134), Expect = 3e-08
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
L L KI I L + S+N+I + G L+ L+ L +++N+I + +GL
Sbjct: 242 LSLANNKITTINGLNKL--PIKILCLSNNQIEMITGLEDLKALQNLDLSHNQISSL-QGL 298
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
+ L + L +N + EL +++ + +L L L++L NP+ K Y +VI+ + ++
Sbjct: 299 ENH-DLLEVINLEDNKIAELREIEYIKNLPILRVLNLLENPIQEKSEYWFFVIFMLLRLT 357
Query: 144 VLDFQKVKLKERQEA 158
LD +K+K++E+ A
Sbjct: 358 ELDQKKIKVEEKVSA 372
>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
Length = 865
Score = 56.2 bits (134), Expect = 3e-08
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
L+L G + +E + + +D SDN I ++ L LKTLL++ N I +
Sbjct: 107 LNLAGNNLKAMEQINSCT-ALQHLDLSDNNISQIGDLSKLVSLKTLLLHGNIITSLRMAP 165
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKK------HYRLYVIY 137
L L L N + +L ++ LASL L LSI+ NP YR Y++
Sbjct: 166 AYLPRSLAILSLAENEIRDLNEISFLASLTELEQLSIMNNPCVMATPSIPGFDYRPYIVS 225
Query: 138 KVPQVRVLDFQKVKLKERQEAEKMFKGKRG 167
+RVLD + KE +AE ++ +G
Sbjct: 226 WCLNLRVLDGYVISQKESLKAEWLYSQGKG 255
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 55.5 bits (132), Expect = 5e-08
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 42 DQFDAIDFSDN---EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNN 98
D+F+ ++F + + P L +LK L +++NR+ E L + P LT L L+ N
Sbjct: 39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
Query: 99 SLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLD 146
+ +L ++PL L++L L + VTN YR V +PQ+ LD
Sbjct: 99 KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 55.5 bits (132), Expect = 5e-08
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
LDL G +I IEN+ L + ++ + N + +D L L L + +N+I + + +
Sbjct: 8 LDLHGNQITKIENINH-LCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRD-V 65
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
D LPCL L L+ N++ + LA SL+ ++ NP+ + Y+ V+ + Q+R
Sbjct: 66 DN-LPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLR 124
Query: 144 VLDFQKVKLKERQEAEKMFK 163
LD +++ +ER+ A + K
Sbjct: 125 QLDMKRITEEERRMASVLAK 144
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 55.5 bits (132), Expect = 5e-08
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
LDL G +I IEN+ L + ++ + N + +D L L L + +N+I + + +
Sbjct: 183 LDLHGNQITKIENINH-LCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRD-V 240
Query: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
D LPCL L L+ N++ + LA SL+ ++ NP+ + Y+ V+ + Q+R
Sbjct: 241 DN-LPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLR 299
Query: 144 VLDFQKVKLKERQEAEKMFK 163
LD +++ +ER+ A + K
Sbjct: 300 QLDMKRITEEERRMASVLAK 319
>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
Length = 466
Score = 53.5 bits (127), Expect = 2e-07
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 8/159 (5%)
Query: 4 LTAELIEQAAQYTNAV--RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
+T +LI + A++ + V EL L +I +E++ + +N I K++
Sbjct: 4 ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVS 63
Query: 62 LLRRLKTLLVNNNRICRIG--EGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLS 119
L++L+ L + N I +I EG ++ L +L LT N + EL + L L L
Sbjct: 64 KLKKLEYLNLALNNIEKIENLEGCEE----LAKLDLTVNFIGELSSIKNLQHNIHLKELF 119
Query: 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
++ NP + HYR +V+ +PQ++ LD ++++ ER +A
Sbjct: 120 LMGNPCASFDHYREFVVATLPQLKWLDGKEIEPSERIKA 158
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 50.8 bits (120), Expect = 1e-06
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
RELDL +I IENL A L + + +D S N +R ++G L RLK L + NN+I +I E
Sbjct: 123 RELDLYDNQIKKIENLEA-LTELEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKI-E 180
Query: 82 GLDQALPCLTELILTNNSLVELGDLDPLASLKSL 115
L L L L L +N + + ++D L +L+SL
Sbjct: 181 NLSN-LHQLQMLELGSNRIRAIENIDTLTNLESL 213
Score = 45.8 bits (107), Expect = 4e-05
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
M++L + I L L KI ++NL A L + N + K++G
Sbjct: 190 MLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDA-LTNLTVLSMQSNRLTKIEGL 248
Query: 61 PLLRRLKTLLVNNNRICRIGEGLDQA---------------------LPCLTELILTNNS 99
L L+ L +++N I + EGL+ L L E + +N
Sbjct: 249 QNLVNLRELYLSHNGI-EVIEGLENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNL 307
Query: 100 LVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLD 146
L DLD L +SL + + RNP+ YR V+ +P VR +D
Sbjct: 308 LESWSDLDELKGARSLETVYLERNPLQKDPQYRRKVMLALPSVRQID 354
Score = 42.7 bits (99), Expect = 3e-04
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFPL 62
+ A+L EQ+ + R E +++PV +E + D D +D + I K++GF +
Sbjct: 39 IVADLSEQSLK-DGEERGEEDPEEEHELPVDMETINLDRDAED-VDLNHYRIGKIEGFEV 96
Query: 63 LRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTY-LSIL 121
L+++KTL + N I I E L++ L L EL L +N + ++ +L+ L L+ L ++L
Sbjct: 97 LKKVKTLCLRQNLIKCI-ENLEE-LQSLRELDLYDNQIKKIENLEALTELEILDISFNLL 154
Query: 122 RNPVTNKKHYRLYVIYKV 139
RN K RL ++ V
Sbjct: 155 RNIEGVDKLTRLKKLFLV 172
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 50.1 bits (118), Expect = 2e-06
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 7/199 (3%)
Query: 53 EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASL 112
E+ L P L +L+ L +++N I E L + P LT L L+ N + +L ++ L +L
Sbjct: 5 ELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNL 64
Query: 113 KSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAK 172
K+L L + +TN + YR + + Q+ LD + E ++E+ + G +
Sbjct: 65 KNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEE-DDEDGDE--D 121
Query: 173 DIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGL--LQSGQIP 230
D P G ++++ D + ++ S L E E GL L +I
Sbjct: 122 DEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEA--GSELGEGEEEVGLSYLMKEEIQ 179
Query: 231 GRERRSGPTDDGEEEMEED 249
E ++GEEE EE+
Sbjct: 180 DEEDDDDYVEEGEEEEEEE 198
>gi|157674358 leucine rich repeat containing 50 [Homo sapiens]
Length = 725
Score = 47.8 bits (112), Expect = 9e-06
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 34 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPC--LT 91
IENL L + DA++ S+N I+ ++ L L TL + +N + + E + C L
Sbjct: 166 IENL-EPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHLETV-EDIQHLQECLRLC 223
Query: 92 ELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150
L L++N L + L L S+ L L+++ NPV + +YR V ++ + LD + V
Sbjct: 224 VLDLSHNKLSDPEILSILESMPDLRVLNLMGNPVIRQIPNYRRTVTVRLKHLTYLDDRPV 283
Query: 151 KLKERQEAEKMFKGKRGAQ 169
K+R AE +G A+
Sbjct: 284 FPKDRACAEAWARGGYAAE 302
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/131 (25%), Positives = 59/131 (45%)
Query: 34 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTEL 93
IE+L A + + + + + P L +LK +++ NRI + LP LT L
Sbjct: 54 IESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHL 113
Query: 94 ILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
L+ L ++ L+PL L+ L L + V N Y+ V +PQ+ LD + +
Sbjct: 114 NLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQ 173
Query: 154 ERQEAEKMFKG 164
E +++ G
Sbjct: 174 EAPDSDAQVDG 184
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/131 (25%), Positives = 59/131 (45%)
Query: 34 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTEL 93
IE+L A + + + + + P L +LK +++ NRI + LP LT L
Sbjct: 54 IESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHL 113
Query: 94 ILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
L+ L ++ L+PL L+ L L + V N Y+ V +PQ+ LD + +
Sbjct: 114 NLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQ 173
Query: 154 ERQEAEKMFKG 164
E +++ G
Sbjct: 174 EAPDSDAQVDG 184
>gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
Length = 450
Score = 45.4 bits (106), Expect = 5e-05
Identities = 32/113 (28%), Positives = 52/113 (46%)
Query: 34 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTEL 93
IE+L A + + + + + P L +LK +++ NRI + LP LT L
Sbjct: 54 IESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHL 113
Query: 94 ILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLD 146
L+ L ++ L+PL L+ L L + V N Y+ V +PQ+ LD
Sbjct: 114 NLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
>gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
Length = 192
Score = 45.4 bits (106), Expect = 5e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 90 LTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
L+ L L NS+ LG+++ LA L L L++ NP+ +K YR YV+ + ++ DF
Sbjct: 104 LSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSG 163
Query: 150 VKLKERQEAE 159
V +R AE
Sbjct: 164 VTKADRTTAE 173
>gi|218931217 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 45.4 bits (106), Expect = 5e-05
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
L LRG + + LG L + +D S N + L LR+L L V+NNR+ GL
Sbjct: 36 LKLRGLGLADLGCLGECLG-LEWLDLSGNALTHLGPLASLRQLAVLNVSNNRL----TGL 90
Query: 84 DQALPC--LTELILTNNSLVELGDLDPLASLKSLTYLSI------LRNPVTNKKHYRLYV 135
+ C L L N L G L LA L L YL + L NP+ Y V
Sbjct: 91 EPLATCENLQSLNAAGNLLATPGQLQCLAGLPCLEYLRLRDPLARLSNPLCANPSYWAAV 150
Query: 136 IYKVPQVRVLDFQKV 150
+P ++V+D ++V
Sbjct: 151 RELLPGLKVIDGERV 165
>gi|13027616 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 45.4 bits (106), Expect = 5e-05
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
L LRG + + LG L + +D S N + L LR+L L V+NNR+ GL
Sbjct: 36 LKLRGLGLADLGCLGECLG-LEWLDLSGNALTHLGPLASLRQLAVLNVSNNRL----TGL 90
Query: 84 DQALPC--LTELILTNNSLVELGDLDPLASLKSLTYLSI------LRNPVTNKKHYRLYV 135
+ C L L N L G L LA L L YL + L NP+ Y V
Sbjct: 91 EPLATCENLQSLNAAGNLLATPGQLQCLAGLPCLEYLRLRDPLARLSNPLCANPSYWAAV 150
Query: 136 IYKVPQVRVLDFQKV 150
+P ++V+D ++V
Sbjct: 151 RELLPGLKVIDGERV 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,289,565
Number of Sequences: 37866
Number of extensions: 413569
Number of successful extensions: 1404
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 296
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.