Guide to the Human Genome
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Name: MGC70857 Sequence: fasta or formatted (216aa) NCBI GI: 49169841
Description:

hypothetical protein LOC414919

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         23           2
 C cysteine            3.2          7           1
 D aspartate           3.7          8           2
 E glutamate           4.6         10           1
 F phenylalanine       6.5         14           2
 G glycine             9.3         20           3
 H histidine           2.3          5           1
 I isoleucine          0.5          1           1
 K lysine              1.4          3           1
 L leucine            12.5         27           3
 M methionine          1.4          3           1
 N asparagine          1.9          4           1
 P proline             9.7         21           2
 Q glutamine           2.8          6           1
 R arginine           10.6         23           2
 S serine              6.0         13           1
 T threonine           4.2          9           1
 V valine              4.2          9           2
 W tryptophan          0.9          2           1
 Y tyrosine            3.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC414919 
C15orf39              0.016   hypothetical protein LOC56905 
LOC100294005          0.012   PREDICTED: hypothetical protein 
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
C1orf204              0.007   hypothetical protein LOC284677 
VSIG8                 0.007   V-set and immunoglobulin domain containing 8 
YRDC                  0.007   ischemia/reperfusion inducible protein 
LRP1                  0.007   low density lipoprotein-related protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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