Search of human proteins with 45580740

Search of human proteins with 45580740

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo
sapiens]
         (63 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo sapi...   138   1e-33
gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo sapi...   138   1e-33
gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi...   138   1e-33
gi|17986270 dopamine receptor D2 isoform short [Homo sapiens]          35   0.017
gi|4503385 dopamine receptor D2 isoform long [Homo sapiens]            33   0.049
gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo ...    30   0.42 
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    27   4.6  
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    27   4.6  
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 26   6.0  
gi|4504573 inhibitor of DNA binding 4, dominant negative helix-l...    26   7.8  

>gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo
          sapiens]
          Length = 63

 Score =  138 bits (347), Expect = 1e-33
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 60
          MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW
Sbjct: 1  MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 60

Query: 61 SSQ 63
          SSQ
Sbjct: 61 SSQ 63


>gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo
          sapiens]
          Length = 75

 Score =  138 bits (347), Expect = 1e-33
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 60
          MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW
Sbjct: 13 MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 72

Query: 61 SSQ 63
          SSQ
Sbjct: 73 SSQ 75


>gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo
           sapiens]
          Length = 118

 Score =  138 bits (347), Expect = 1e-33
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1   MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 60
           MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW
Sbjct: 56  MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 115

Query: 61  SSQ 63
           SSQ
Sbjct: 116 SSQ 118


>gi|17986270 dopamine receptor D2 isoform short [Homo sapiens]
          Length = 414

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 19  AETREAPRRIQELTMPALLRTNPPEHPRHLPQP 51
           A  +EA RR QEL M  L  T+PPE  R+ P P
Sbjct: 238 APLKEAARRAQELEMEMLSSTSPPERTRYSPIP 270


>gi|4503385 dopamine receptor D2 isoform long [Homo sapiens]
          Length = 443

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 23  EAPRRIQELTMPALLRTNPPEHPRHLPQP 51
           EA RR QEL M  L  T+PPE  R+ P P
Sbjct: 271 EAARRAQELEMEMLSSTSPPERTRYSPIP 299


>gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 284

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 30  ELTMPALLRTNPPEHPRHLP 49
           EL + ALL + PP HP HLP
Sbjct: 121 ELLVEALLTSKPPAHPSHLP 140


>gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo
           sapiens]
          Length = 311

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 30  ELTMPALLRTNPPEHPRHLP 49
           EL + ALL + PP HP HLP
Sbjct: 148 ELLVEALLTSKPPAHPSHLP 167


>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 13  RDLTSGAETREAPRRIQELTMPALLRTNPP---EHPRHLPQPRRVDRVPLW 60
           R L   ++T    RR   L  P     +PP   +  R LPQP+   ++P W
Sbjct: 441 RSLEGSSDTALPLRRAGSLCSPLDEPVSPPSRAQRSRSLPQPKLGTQLPSW 491


>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 13  RDLTSGAETREAPRRIQELTMPALLRTNPP---EHPRHLPQPRRVDRVPLW 60
           R L   ++T    RR   L  P     +PP   +  R LPQP+   ++P W
Sbjct: 441 RSLEGSSDTALPLRRAGSLCSPLDEPVSPPSRAQRSRSLPQPKLGTQLPSW 491


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 17 SGAETREAPRRIQELTMP-ALLRTNPPEHPRHLPQPRR 53
          +GA  R A R++     P +L RT+   HP H P P R
Sbjct: 13 AGAGRRPAARQVAPPGGPXSLARTHSRRHPDHAPPPGR 50


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 10  PAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQP 51
           P V + + G E      R+   T   LL   PPE P   P P
Sbjct: 731 PRVSEASRGLELGHGRPRVAAKTHERLLPQGPPELPSESPPP 772


>gi|4504573 inhibitor of DNA binding 4, dominant negative
           helix-loop-helix protein [Homo sapiens]
          Length = 161

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 32  TMPALLRTNPPEHPRHLPQ---PRRVDRVPL 59
           T PALLR  PP  P H P    P    R PL
Sbjct: 110 THPALLRQPPPPAPPHHPAGTCPAAPPRTPL 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,223,948
Number of Sequences: 37866
Number of extensions: 134780
Number of successful extensions: 484
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 12
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.