Search of human proteins with 45580736

Search of human proteins with 45580736

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45580736 leukocyte specific transcript 1 isoform 5 [Homo
sapiens]
         (39 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45580736 leukocyte specific transcript 1 isoform 5 [Homo sapi...    86   8e-18
gi|45505157 leukocyte specific transcript 1 isoform 3 [Homo sapi...    82   1e-16
gi|55953076 connexin 50 [Homo sapiens]                                 26   7.9  

>gi|45580736 leukocyte specific transcript 1 isoform 5 [Homo
          sapiens]
          Length = 39

 Score = 85.5 bits (210), Expect = 8e-18
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 1  MMRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 39
          MMRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT
Sbjct: 1  MMRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 39


>gi|45505157 leukocyte specific transcript 1 isoform 3 [Homo
          sapiens]
          Length = 51

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 3  RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 39
          RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT
Sbjct: 15 RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51


>gi|55953076 connexin 50 [Homo sapiens]
          Length = 433

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 3   RLPVPSSEGPDLRGRDKRGTKEDPRAD 29
           ++ VP  E  +  G DK G KE+P+++
Sbjct: 363 KVAVPEGEKVETPGVDKEGEKEEPQSE 389


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,948,188
Number of Sequences: 37866
Number of extensions: 56296
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 3
length of query: 39
length of database: 18,247,518
effective HSP length: 13
effective length of query: 26
effective length of database: 17,755,260
effective search space: 461636760
effective search space used: 461636760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.