Search of human proteins with 4557657

Search of human proteins with 4557657

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4557657 immature colon carcinoma transcript 1 [Homo sapiens]
         (206 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4557657 immature colon carcinoma transcript 1 [Homo sapiens]       419   e-117
gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Ho...    37   0.009
gi|242332527 hypothetical protein LOC65250 [Homo sapiens]              31   0.65 
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ...    30   1.4  
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ...    30   1.4  
gi|156119615 myosin IXA [Homo sapiens]                                 30   1.9  
gi|148746218 TAO kinase 3 [Homo sapiens]                               29   2.5  
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof...    28   4.2  
gi|67551265 transcription factor ELYS [Homo sapiens]                   28   7.2  
gi|15559211 RE1-silencing transcription factor [Homo sapiens]          27   9.4  
gi|29788785 tubulin, beta [Homo sapiens]                               27   9.4  

>gi|4557657 immature colon carcinoma transcript 1 [Homo sapiens]
          Length = 206

 Score =  419 bits (1076), Expect = e-117
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR 60
           MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
Sbjct: 1   MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR 60

Query: 61  VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA 120
           VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
Sbjct: 61  VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA 120

Query: 121 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 180
           ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
Sbjct: 121 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI 180

Query: 181 ENMNRERLRQKRIHSAVKTSRRVDMD 206
           ENMNRERLRQKRIHSAVKTSRRVDMD
Sbjct: 181 ENMNRERLRQKRIHSAVKTSRRVDMD 206


>gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Homo
           sapiens]
          Length = 708

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 21/145 (14%)

Query: 66  KQADSDIPLDRLTISYCRSSGPG---------GQNVNKVNSKAEVRFHLATAEWIAEPVR 116
           ++ + ++ +D L  +YCRS G               +  +SK   +    +++  +   R
Sbjct: 54  QKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSR 113

Query: 117 QKIAITHKNKINRLGELILTSESSRYQFR------NLADCLQKIRDMITEASQTPKEPTK 170
              A+       R GEL LT      Q R      + AD   + R+   EA  + ++  +
Sbjct: 114 YAAALY------RQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAE 167

Query: 171 EDVKLHRIRIENMNRERLRQKRIHS 195
           +DVK   +R      E+ RQ+R+ S
Sbjct: 168 DDVKQITVRFSRPESEQARQRRVQS 192


>gi|242332527 hypothetical protein LOC65250 [Homo sapiens]
          Length = 3197

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 9    WGLSRAGVWLLPPPARCPRRALHKQKDGTE 38
            WGL   G++L  PP  CP+ A+  ++DG +
Sbjct: 1145 WGLVPFGLYLPAPPLYCPQPAILSEEDGDD 1174


>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
           sapiens]
          Length = 493

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38  EFKSIYSLDKLYPESQGSDTAWRVPNGAKQADSDIPLDRLTISYCRSSGPGG 89
           EFK+ Y+L +      G+  A RVP+GA +  + +PL  L++     +G GG
Sbjct: 198 EFKNGYNLRRHEAIHTGAK-AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGG 248


>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
           sapiens]
          Length = 477

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 38  EFKSIYSLDKLYPESQGSDTAWRVPNGAKQADSDIPLDRLTISYCRSSGPGG 89
           EFK+ Y+L +      G+  A RVP+GA +  + +PL  L++     +G GG
Sbjct: 198 EFKNGYNLRRHEAIHTGAK-AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGG 248


>gi|156119615 myosin IXA [Homo sapiens]
          Length = 2548

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 125  NKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRIENMN 184
            N+I  + E     ES+R    +  DCL++  +   E +Q+      ++  L R R  ++ 
Sbjct: 1201 NRIKAIEECKSVIESNRISRESSVDCLKESPNKQQERAQSQSGVDLQEDVLVRERPRSL- 1259

Query: 185  RERLRQKRIHSAVKTSRRV 203
             E L QK++  A + SRR+
Sbjct: 1260 -EDLHQKKVGRAKRESRRM 1277


>gi|148746218 TAO kinase 3 [Homo sapiens]
          Length = 898

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 138 ESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRIENMNRER----LRQKRI 193
           ES + Q++    C +KI++ + E   TPK+  +E +  H+  +++   E     L Q+R+
Sbjct: 550 ESQKKQYKI---CKEKIKEEMNEDHSTPKKEKQERISKHKENLQHTQAEEEAHLLTQQRL 606

Query: 194 H 194
           +
Sbjct: 607 Y 607


>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           8 [Homo sapiens]
          Length = 780

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 152 QKIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQKRIHSAVKTSR 201
           QK R+M  E S+  +E   + V L R R+E + R+R R++++    K  R
Sbjct: 140 QKRREMAREHSR--RERGNDGVCLFRDRLEQLERKRERERKMREQQKEQR 187


>gi|67551265 transcription factor ELYS [Homo sapiens]
          Length = 2266

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 74   LDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGEL 133
            +D +  S  R+ G   QNVN  +++ E    +AT +   + VR+K   T K K     E+
Sbjct: 1731 VDDVVSSKTRTRGQRIQNVNVKSAQQEASADVATPKMPGQSVRKK---TRKAK-----EI 1782

Query: 134  ILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDV 173
               SE+     R L+   Q  ++ +T      K+   +D+
Sbjct: 1783 SEASENIYSDVRGLSQNQQIPQNSVTPRRGRRKKEVNQDI 1822


>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
          Length = 1097

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 18  LLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWRVPNGAKQADSDIPLDRL 77
           L PP    P+  L ++  G +        KL    +G+  A     GA++AD  +P    
Sbjct: 860 LSPPSPPLPKENLREEASGDQ--------KLLNTGEGNKEAPLQKVGAEEADESLPGLAA 911

Query: 78  TISYCRSSGPGGQNVN 93
            I+        GQN+N
Sbjct: 912 NINESTHISSSGQNLN 927


>gi|29788785 tubulin, beta [Homo sapiens]
          Length = 444

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 62 PNGAKQADSDIPLDRLTISYCRSSG 86
          P G    DSD+ LDR+++ Y  ++G
Sbjct: 32 PTGTYHGDSDLQLDRISVYYNEATG 56


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,155,438
Number of Sequences: 37866
Number of extensions: 337495
Number of successful extensions: 1012
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 12
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.