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Search of human proteins with 4507215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507215 signal recognition particle 54kDa isoform 1 [Homo
sapiens]
(504 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507215 signal recognition particle 54kDa isoform 1 [Homo sap... 990 0.0
gi|226371618 signal recognition particle 54kDa isoform 2 [Homo s... 888 0.0
gi|89061728 PREDICTED: similar to signal recognition particle 54... 323 3e-88
gi|23308697 signal recognition particle receptor [Homo sapiens] 99 7e-21
gi|73747915 transporter 2, ATP-binding cassette, sub-family B is... 34 0.27
gi|73747917 transporter 2, ATP-binding cassette, sub-family B is... 33 0.46
gi|38348356 testis expressed 9 [Homo sapiens] 33 0.46
gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens] 32 1.0
gi|41393563 kinesin family member 1B isoform b [Homo sapiens] 32 1.0
gi|119943102 CREB binding protein isoform b [Homo sapiens] 31 2.3
gi|119943104 CREB binding protein isoform a [Homo sapiens] 31 2.3
gi|19924175 axonal transport of synaptic vesicles [Homo sapiens] 30 5.1
gi|157502212 polypeptide N-acetylgalactosaminyltransferase 7 [Ho... 30 5.1
gi|4502011 adenylate kinase 1 [Homo sapiens] 30 6.7
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom... 29 8.8
gi|38176300 nestin [Homo sapiens] 29 8.8
gi|21450759 adenylate kinase domain containing 1 isoform 2 [Homo... 29 8.8
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 29 8.8
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 29 8.8
>gi|4507215 signal recognition particle 54kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 990 bits (2560), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240
Query: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
Sbjct: 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI 300
Query: 301 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 360
EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
Sbjct: 301 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM 360
Query: 361 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 420
SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
Sbjct: 361 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL 420
Query: 421 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 480
LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
Sbjct: 421 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL 480
Query: 481 QSMMRQFQQGAAGNMKGMMGFNNM 504
QSMMRQFQQGAAGNMKGMMGFNNM
Sbjct: 481 QSMMRQFQQGAAGNMKGMMGFNNM 504
>gi|226371618 signal recognition particle 54kDa isoform 2 [Homo
sapiens]
Length = 455
Score = 888 bits (2294), Expect = 0.0
Identities = 447/448 (99%), Positives = 448/448 (100%)
Query: 57 KSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTT 116
+SAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTT
Sbjct: 8 RSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTT 67
Query: 117 TCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176
TCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV
Sbjct: 68 TCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 127
Query: 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAF 236
EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAF
Sbjct: 128 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAF 187
Query: 237 KDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 296
KDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG
Sbjct: 188 KDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG 247
Query: 297 MGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG 356
MGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG
Sbjct: 248 MGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG 307
Query: 357 TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRD 416
TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRD
Sbjct: 308 TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRD 367
Query: 417 VQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGG 476
VQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGG
Sbjct: 368 VQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGG 427
Query: 477 MAGLQSMMRQFQQGAAGNMKGMMGFNNM 504
MAGLQSMMRQFQQGAAGNMKGMMGFNNM
Sbjct: 428 MAGLQSMMRQFQQGAAGNMKGMMGFNNM 455
>gi|89061728 PREDICTED: similar to signal recognition particle 54kDa
[Homo sapiens]
Length = 168
Score = 323 bits (827), Expect = 3e-88
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 221
SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM
Sbjct: 4 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
Query: 222 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 281
DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD
Sbjct: 64 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
Query: 282 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 325
FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG
Sbjct: 124 FEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 167
>gi|23308697 signal recognition particle receptor [Homo sapiens]
Length = 638
Score = 99.4 bits (246), Expect = 7e-21
Identities = 68/313 (21%), Positives = 143/313 (45%), Gaps = 31/313 (9%)
Query: 14 LRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRK 73
L+ L + ++ E + ++L ++ L+ +V + QL E+V + ++ + M +
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTS 383
Query: 74 MIQHAVFKELVKLVDPGVKAW-------TPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126
++ A+ + LV+++ P + + + V+ F G+ G GK+T +K++++
Sbjct: 384 TVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
Query: 127 RKGWKTCLICADTFRAGAFDQLK-------------QNATKARIPFYGSYTEMDPVIIAS 173
G+ + DTFRAGA +QL+ ++ + + + D IA
Sbjct: 444 ENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAM 503
Query: 174 EGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA 233
E + +N+ F++++VDT+GR + L + ++ PD +++V +A +G Q
Sbjct: 504 EAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQL 563
Query: 234 KAFKDKVD----------VASVIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDF 282
F + + +++TK D K G A+S T PI+F+GTG+ D
Sbjct: 564 VKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDL 623
Query: 283 EPFKTQPFISKLL 295
+ ++ L+
Sbjct: 624 RSLNAKAVVAALM 636
>gi|73747915 transporter 2, ATP-binding cassette, sub-family B
isoform 1 [Homo sapiens]
Length = 703
Score = 34.3 bits (77), Expect = 0.27
Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 17/176 (9%)
Query: 89 PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG------------WKTCLIC 136
P +K T T V VG GSGK+T + L YQ G ++ C +
Sbjct: 484 PVLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPISQYEHCYLH 543
Query: 137 ADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEG--VEKFKNENFEIIIVDTSGR 194
+ G L + + I + E D V+ A++ + F E I D +
Sbjct: 544 SQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGIYTDVGEK 603
Query: 195 HKQEDSLFEEMLQVANAIQPDNIVYVMD---ASIGQACEAQAKAFKDKVDVASVIV 247
Q + ++ L +A A+ D V ++D +++ CE + + + D +++
Sbjct: 604 GSQLAAGQKQRLAIARALVRDPRVLILDEATSALDVQCEQALQDWNSRGDRTVLVI 659
>gi|73747917 transporter 2, ATP-binding cassette, sub-family B
isoform 2 [Homo sapiens]
Length = 653
Score = 33.5 bits (75), Expect = 0.46
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 18/163 (11%)
Query: 89 PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKG------------WKTCLIC 136
P +K T T V VG GSGK+T + L YQ G ++ C +
Sbjct: 484 PVLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPISQYEHCYLH 543
Query: 137 ADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEG--VEKFKNENFEIIIVDTSGR 194
+ G L + + I + E D V+ A++ + F E I D +
Sbjct: 544 SQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGIYTDVGEK 603
Query: 195 HKQEDSLFEEMLQVANAIQPDNIVYVMD---ASIGQACEAQAK 234
Q + ++ L +A A+ D V ++D +++ CE QAK
Sbjct: 604 GSQLAAGQKQRLAIARALVRDPRVLILDEATSALDVQCE-QAK 645
>gi|38348356 testis expressed 9 [Homo sapiens]
Length = 391
Score = 33.5 bits (75), Expect = 0.46
Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 231 AQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
++ K +D + + KL KG S+V S + +DF F
Sbjct: 101 SETKPKTKNIDPVNKVQNKLHSANKGRKTNSSVKLKYSDVQTADDVAIPEDFSDFSLAKT 160
Query: 291 ISKLLGMGDIEGLIDKVNEL--KLDDNEALIEKLKHGQFTLRDMYEQFQNIM-----KMG 343
ISK+ G + EGL + ++++ + ++ +++ + L M E+ N++ K
Sbjct: 161 ISKIEGQLEEEGLPEYIDDIFSGVSNDIGTEAQIRFLKAKLHVMQEELDNVVCECNKKED 220
Query: 344 PFSQILGMIPGFGTDFMSKG---NEQESMARLKKLMTIMDSMN------DQELDSTDGAK 394
+ + F DFM + N Q+S +++K T+ + N Q+L S + +
Sbjct: 221 EIQNLKSQVKNFEEDFMRQQRTINMQQS--QVEKYKTLFEEANKKYDGLQQQLSSVE-RE 277
Query: 395 VFSKQPGRIQRVARGSGVSTR-DVQELLTQYTKF-AQMVKKMGGIKGLFKGGDMSKNVSQ 452
+ +K+ R+Q+ A S +T + L + K+ ++ K K + V +
Sbjct: 278 LENKR--RLQKQAASSQSATEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHKKIEVLK 335
Query: 453 SQMAKLNQQMAKMM 466
S+ KL +Q ++M
Sbjct: 336 SENKKLEKQKGELM 349
>gi|41393559 kinesin family member 1B isoform alpha [Homo sapiens]
Length = 1153
Score = 32.3 bits (72), Expect = 1.0
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 7 GRKITSALRSLSNATIINEEVLNAM-----LKEV-CTALLEADVNIKLVKQLRENVKSAI 60
G T+ + +LS A I +E L+ + K++ C A++ D N KLV++L+E V
Sbjct: 315 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKEEVTRLK 374
Query: 61 DL 62
DL
Sbjct: 375 DL 376
>gi|41393563 kinesin family member 1B isoform b [Homo sapiens]
Length = 1770
Score = 32.3 bits (72), Expect = 1.0
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 7 GRKITSALRSLSNATIINEEVLNAM-----LKEV-CTALLEADVNIKLVKQLRENVKSAI 60
G T+ + +LS A I +E L+ + K++ C A++ D N KLV++L+E V
Sbjct: 315 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKEEVTRLK 374
Query: 61 DL 62
DL
Sbjct: 375 DL 376
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 31.2 bits (69), Expect = 2.3
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 434 MGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAG 493
MGG+ + ++ MA +N Q +M+ ++L Q +Q QQG+AG
Sbjct: 2123 MGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAG 2182
Query: 494 NMKGMMG 500
GM G
Sbjct: 2183 MAGGMAG 2189
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 31.2 bits (69), Expect = 2.3
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 434 MGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAG 493
MGG+ + ++ MA +N Q +M+ ++L Q +Q QQG+AG
Sbjct: 2161 MGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAG 2220
Query: 494 NMKGMMG 500
GM G
Sbjct: 2221 MAGGMAG 2227
>gi|19924175 axonal transport of synaptic vesicles [Homo sapiens]
Length = 1690
Score = 30.0 bits (66), Expect = 5.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 7 GRKITSALRSLSNATIINEEVLNAM-----LKEV-CTALLEADVNIKLVKQLRENVKSAI 60
G T+ + +LS A I +E L+ + K++ C A++ D N KL+++L++ V
Sbjct: 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRCNAVINEDPNNKLIRELKDEVTRLR 380
Query: 61 DL 62
DL
Sbjct: 381 DL 382
>gi|157502212 polypeptide N-acetylgalactosaminyltransferase 7 [Homo
sapiens]
Length = 657
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 50 KQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGL 109
K+LR+ MA GL I+ F EL L DPG++ W G+ I +
Sbjct: 372 KRLRKTKTEPYRSPAMAGGLFA---IEREFFFEL-GLYDPGLQIWG---GENFEISYKIW 424
Query: 110 QGSGKT--TTCSKLAYYYQRKGWK 131
Q GK CS++ + Y+ +GW+
Sbjct: 425 QCGGKLLFVPCSRVGHIYRLEGWQ 448
>gi|4502011 adenylate kinase 1 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 6.7
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
K +I VG GSGK T C K+ Q+ G+ T L D R+ + + I
Sbjct: 7 KTKIIFVVGGPGSGKGTQCEKIV---QKYGY-THLSTGDLLRSEVSSGSARGKKLSEIME 62
Query: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVY 219
G ++ V+ K + ++D R Q+ FE + QP ++Y
Sbjct: 63 KGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-----QPTLLLY 117
Query: 220 V 220
V
Sbjct: 118 V 118
>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
sapiens]
Length = 1911
Score = 29.3 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 86 LVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128
L++P P G + +G Q SGKTT C+ LA Y+ K
Sbjct: 376 LLNPRPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 29.3 bits (64), Expect = 8.8
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 3 LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62
L G++ T L+SL N+E++ ++ + T L N +LV L+EN++S L
Sbjct: 614 LKPTGKEDTQTLQSLQKE---NQELMKSLEGNLETFLFPGTENQELVSSLQENLESLTAL 670
Query: 63 EE 64
E+
Sbjct: 671 EK 672
>gi|21450759 adenylate kinase domain containing 1 isoform 2 [Homo
sapiens]
Length = 421
Score = 29.3 bits (64), Expect = 8.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 86 LVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128
L++P P G + +G Q SGKTT C+ LA Y+ K
Sbjct: 376 LLNPRPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 29.3 bits (64), Expect = 8.8
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 8 RKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMAS 67
R+ T + +LS+ I E ++N M T VN K+VK + + +DL+ +
Sbjct: 1376 RRRTDPMVTLSS---ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRE 1432
Query: 68 GLNKRKMIQHAVFKELVKLV 87
+ KR F+E ++L+
Sbjct: 1433 NVRKRLYPSREEFREHLELI 1452
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 29.3 bits (64), Expect = 8.8
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 8 RKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMAS 67
R+ T + +LS+ I E ++N M T VN K+VK + + +DL+ +
Sbjct: 1397 RRRTDPMVTLSS---ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRE 1453
Query: 68 GLNKRKMIQHAVFKELVKLV 87
+ KR F+E ++L+
Sbjct: 1454 NVRKRLYPSREEFREHLELI 1473
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,359,223
Number of Sequences: 37866
Number of extensions: 668692
Number of successful extensions: 1933
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 25
length of query: 504
length of database: 18,247,518
effective HSP length: 107
effective length of query: 397
effective length of database: 14,195,856
effective search space: 5635754832
effective search space used: 5635754832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.