Search of human proteins with 4505941

Search of human proteins with 4505941

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo
sapiens]
         (1174 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo sa...  2370   0.0  
gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo s...   767   0.0  
gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo s...   746   0.0  
gi|33469941 RNA polymerase I polypeptide B isoform 1 [Homo sapiens]   383   e-106
gi|212286172 RNA polymerase I polypeptide B isoform 2 [Homo sapi...   378   e-104
gi|55770862 thyroglobulin [Homo sapiens]                               35   0.42 
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]             33   2.1  
gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]            32   3.6  
gi|171906593 branched chain ketoacid dehydrogenase kinase isofor...    32   4.6  
gi|171906589 branched chain ketoacid dehydrogenase kinase isofor...    32   4.6  
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]       32   4.6  

>gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo
            sapiens]
          Length = 1174

 Score = 2370 bits (6143), Expect = 0.0
 Identities = 1174/1174 (100%), Positives = 1174/1174 (100%)

Query: 1    MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60
            MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
Sbjct: 1    MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60

Query: 61   DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY 120
            DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
Sbjct: 61   DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY 120

Query: 121  SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD 180
            SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
Sbjct: 121  SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD 180

Query: 181  PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML 240
            PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
Sbjct: 181  PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML 240

Query: 241  ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM 300
            ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
Sbjct: 241  ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM 300

Query: 301  VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK 360
            VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
Sbjct: 301  VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK 360

Query: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ 420
            KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
Sbjct: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ 420

Query: 421  KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 480
            KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
Sbjct: 421  KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 480

Query: 481  HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 540
            HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
Sbjct: 481  HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 540

Query: 541  ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE 600
            ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
Sbjct: 541  ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE 600

Query: 601  VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG 660
            VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
Sbjct: 601  VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG 660

Query: 661  VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP 720
            VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
Sbjct: 661  VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP 720

Query: 721  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV 780
            RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
Sbjct: 721  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV 780

Query: 781  AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM 840
            AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
Sbjct: 781  AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM 840

Query: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
            RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960
            TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 961  ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY 1020
            ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY 1020

Query: 1021 HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR 1080
            HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
Sbjct: 1021 HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR 1080

Query: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140
            DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140

Query: 1141 RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
            RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1141 RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174


>gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo
            sapiens]
          Length = 1133

 Score =  767 bits (1981), Expect = 0.0
 Identities = 447/1164 (38%), Positives = 688/1164 (59%), Gaps = 77/1164 (6%)

Query: 24   EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR 83
            E  W ++ ++   KGLV+Q +DSF+ FI + +++I++    +   A+           P 
Sbjct: 24   EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72

Query: 84   YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQ 143
            + LK+  IY+  P   E      P+ P+E RLR++TYSAP+ VDI  T    G +++   
Sbjct: 73   WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129

Query: 144  HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATN 203
                 IG++PIMLRS+ C+L G T  +  +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130  ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187

Query: 204  TVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYI 263
             + V A  D K A      S        T+     M  + G          R       +
Sbjct: 188  RIIVEA--DRKGAVGASVTSSTHEKKSRTN-----MAVKQG----------RFYLRHNTL 230

Query: 264  KQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ--EQNVALNFI 321
             +++PI+I+F+A+G  SD++I++ I     +  +M    PSL+E    Q   Q  AL +I
Sbjct: 231  SEDIPIVIIFKAMGVESDQEIVQMI---GTEEHVMAAFGPSLEECQKAQIFTQMQALKYI 287

Query: 322  GSRGAKP----GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 377
            G++  +     G  K+ +I+ A+E+L   +L HV V +F    K  +   MV R++LA  
Sbjct: 288  GNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ- 346

Query: 378  GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI--DRGKDFNLELAI 435
            G  ++DDRD+YGNKRL+LAG LL+ LF  +FK    E++  A + I   R   F++   +
Sbjct: 347  GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHM 406

Query: 436  KTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 495
            +   I++G+  +++TGNW   K+    R GV+QVL+RL++ S L  + R++S   +  K+
Sbjct: 407  RQDQITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKV 465

Query: 496  AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 555
            + PR L  + WGM+CP++TPEG A GLVKNLALM +I+   +  PI++      +E++  
Sbjct: 466  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNL 525

Query: 556  ISPAAIA--DATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIR 613
            +    ++  +   +F+NG  +G+ +D ++L+NT R +RR    I   VS+  ++ +R + 
Sbjct: 526  LCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVY 584

Query: 614  IYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETV 673
            I +D GR+CRP +IV+KQK  +  +H+++L +  Y N+  +D +   +VEY+D  EE   
Sbjct: 585  ISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDC 641

Query: 674  MLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 733
             +A+    + +         TH EI P  +LGVCA +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 642  NIALYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM 694

Query: 734  GVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDS 793
            G    N   R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED+
Sbjct: 695  GTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDA 754

Query: 794  VIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKL 848
            +++N++++DRGF R + Y++ K   ++ + + FD+    + +  TR+     RH I   L
Sbjct: 755  LVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPI--WRHEI---L 809

Query: 849  DDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV 907
            D DG+ +PG +V    V++ K++ T+ +   E  +  ++   +D     + +    +++V
Sbjct: 810  DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 869

Query: 908  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967
            M++ N E     K+ +R  R P+IGDKF+SRHGQKG CG+   QEDMPF   GI PDII+
Sbjct: 870  MISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIM 929

Query: 968  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 1027
            NPH  PSRMT+G LIE L GK     G     T F  +  V+ +   L  +GY+  G + 
Sbjct: 930  NPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDY 988

Query: 1028 LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1087
            + +G TG  + + I+ GP YYQ+LKHMV DK+H+RARGP  +L RQP EGRSRDGGLR G
Sbjct: 989  VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1048

Query: 1088 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
            EMERDC I +GA+  L ERL  +SD ++V VC  CG++  +        C  C++   +S
Sbjct: 1049 EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1102

Query: 1148 LVRMPYACKLLFQELMSMSIAPRM 1171
             +R+PYACKLLFQEL SM+I PR+
Sbjct: 1103 SLRIPYACKLLFQELQSMNIIPRL 1126


>gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo
            sapiens]
          Length = 1075

 Score =  746 bits (1925), Expect = 0.0
 Identities = 433/1106 (39%), Positives = 659/1106 (59%), Gaps = 66/1106 (5%)

Query: 82   PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 141
            P + LK+  IY+  P   E      P+ P+E RLR++TYSAP+ VDI  T    G +++ 
Sbjct: 13   PMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRII 69

Query: 142  TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 201
                   IG++PIMLRS+ C+L G T  +  +LNECPLDPGGYFI+ G EKV++ QE+++
Sbjct: 70   RNALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLS 127

Query: 202  TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 261
             N + V A  D K A      S        T+     M  + G          R      
Sbjct: 128  KNRIIVEA--DRKGAVGASVTSSTHEKKSRTN-----MAVKQG----------RFYLRHN 170

Query: 262  YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ--EQNVALN 319
             + +++PI+I+F+A+G  SD++I++ I     +  +M    PSL+E    Q   Q  AL 
Sbjct: 171  TLSEDIPIVIIFKAMGVESDQEIVQMI---GTEEHVMAAFGPSLEECQKAQIFTQMQALK 227

Query: 320  FIGSRGAKP----GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
            +IG++  +     G  K+ +I+ A+E+L   +L HV V +F    K  +   MV R++LA
Sbjct: 228  YIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA 287

Query: 376  ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI--DRGKDFNLEL 433
              G  ++DDRD+YGNKRL+LAG LL+ LF  +FK    E++  A + I   R   F++  
Sbjct: 288  Q-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVK 346

Query: 434  AIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG 493
             ++   I++G+  +++TGNW   K+    R GV+QVL+RL++ S L  + R++S   +  
Sbjct: 347  HMRQDQITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTR 405

Query: 494  KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 553
            K++ PR L  + WGM+CP++TPEG A GLVKNLALM +I+   +  PI++      +E++
Sbjct: 406  KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDV 465

Query: 554  EEISPAAIA--DATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE 611
              +    ++  +   +F+NG  +G+ +D ++L+NT R +RR    I   VS+  ++ +R 
Sbjct: 466  NLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRC 524

Query: 612  IRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEE 671
            + I +D GR+CRP +IV+KQK  +  +H+++L +  Y N+  +D +   +VEY+D  EE 
Sbjct: 525  VYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEEN 581

Query: 672  TVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 731
               +A+    + +         TH EI P  +LGVCA +IP+P HNQSPRNTYQ AMGKQ
Sbjct: 582  DCNIALYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQ 634

Query: 732  AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
            AMG    N   R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ E
Sbjct: 635  AMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIE 694

Query: 792  DSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYD 846
            D++++N++++DRGF R + Y++ K   ++ + + FD+    + +  TR+     RH I  
Sbjct: 695  DALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPI--WRHEI-- 750

Query: 847  KLDDDGLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRYTKRDCSTFLRTSETGIVD 905
             LD DG+ +PG +V    V++ K++ T+ +   E  +  ++   +D     + +    ++
Sbjct: 751  -LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIE 809

Query: 906  QVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDI 965
            +VM++ N E     K+ +R  R P+IGDKF+SRHGQKG CG+   QEDMPF   GI PDI
Sbjct: 810  KVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDI 869

Query: 966  IINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGN 1025
            I+NPH  PSRMT+G LIE L GK     G     T F  +  V+ +   L  +GY+  G 
Sbjct: 870  IMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGK 928

Query: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLR 1085
            + + +G TG  + + I+ GP YYQ+LKHMV DK+H+RARGP  +L RQP EGRSRDGGLR
Sbjct: 929  DYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLR 988

Query: 1086 FGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQ 1145
             GEMERDC I +GA+  L ERL  +SD ++V VC  CG++  +        C  C++   
Sbjct: 989  LGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCH 1042

Query: 1146 ISLVRMPYACKLLFQELMSMSIAPRM 1171
            +S +R+PYACKLLFQEL SM+I PR+
Sbjct: 1043 VSSLRIPYACKLLFQELQSMNIIPRL 1068


>gi|33469941 RNA polymerase I polypeptide B isoform 1 [Homo sapiens]
          Length = 1135

 Score =  383 bits (983), Expect = e-106
 Identities = 330/1116 (29%), Positives = 492/1116 (44%), Gaps = 137/1116 (12%)

Query: 110  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
            P E R R  TY   L  DI   V       +     K F+G +PIM++S  C L  L  +
Sbjct: 100  PAECRGRRSTYRGKLTADINWAV-----NGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQ 154

Query: 170  DLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSK-----YAYTGECRSC 224
             L E +E   + GGYFIING EKV+        N      +   K     Y   G    C
Sbjct: 155  ALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHC 214

Query: 225  LENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQE--VPIIIVFRALGFVSDR 282
            +       + + +  L  G            ++    Y K+   +P+    +AL   SD 
Sbjct: 215  VREEHSAVN-MNLHYLENG-----------TVMLNFIYRKELFFLPLGFALKALVSFSDY 262

Query: 283  DILEHIIYDFEDPEMM-----EMVKPSLDEAFVIQEQNVALNFIGSR-GAKPGVTKEKRI 336
             I + +I   ED   +     +M++  ++E    Q+Q   LN++G     K  V      
Sbjct: 263  QIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKLNVPDWYPN 320

Query: 337  KYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLA 396
            + A E L  +    + +     T+K Y L  M  +L   A G    D+ D   N+ +   
Sbjct: 321  EQAAEFLFNQC---ICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTP 377

Query: 397  GPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGL------KYSLAT 450
            G L     +   +  L  ++I   K   +    ++      RI + G+      +Y  AT
Sbjct: 378  GQLFLMFLKEKLEGWLVSIKIAFDKKAQK-TSVSMNTDNLMRIFTMGIDLTKPFEYLFAT 436

Query: 451  GNWGDQKKAHQAR-AGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR-----QLHNT 504
            GN   +      + +G+  V ++L F   LSH R ++    R    AK R     +L   
Sbjct: 437  GNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVH----RGADFAKMRTTTVRRLLPE 492

Query: 505  LWGMVCPAETPEGHAVGLVKNL-ALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563
             WG +CP  TP+G   GL+ +L A+   ++     + I   L    +  ++     + ++
Sbjct: 493  SWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSYSE 552

Query: 564  ATKIFVNGCWVG-IHKD-PEQLMNTLRK---LRRQMDIIVSEVSMIRDIREREIR----I 614
               + ++G  VG + KD    + ++LR    LR +      EV +I    +  +     +
Sbjct: 553  CYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFL 612

Query: 615  YTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVM 674
            +T   R+ RP+     Q L L K                         E I T+E+  + 
Sbjct: 613  FTTPCRLVRPV-----QNLALGKE------------------------ELIGTMEQIFMN 643

Query: 675  LAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
            +A+  D++      +    TH E+ P  +L V A+ IPF DHNQSPRN YQ  MGKQ MG
Sbjct: 644  VAIFEDEV------FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 697

Query: 735  VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
              +  +  R D   + L  PQ PLV     +Y      P G N+IVA+ SYTGY+ ED++
Sbjct: 698  FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAM 757

Query: 795  IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHA---IYDKLDDD 851
            I+N+++ +RGF     Y+S       +  D  E  ++       G++     +  KLDDD
Sbjct: 758  IVNKASWERGFAHGSVYKS-------EFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDD 810

Query: 852  GLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTL 911
            GL   G ++              +  D   S     T      + ++ E  +VD + V  
Sbjct: 811  GLPFIGAKL--------------QYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCS 856

Query: 912  NQEG---YKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 968
            N  G   +K   I +R  R P IGDKFASRHGQKG     +  EDMPFT  G+ PDI+ N
Sbjct: 857  NDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFN 916

Query: 969  PHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF---NDAVNVQKISNLLSDYGYHLRGN 1025
            PH  PSRMTIG LIE + GK +A  G   DATPF    +   ++    +L   GY+  G 
Sbjct: 917  PHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGT 976

Query: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLR 1085
            E LY+G +G ++ + IFIG  YYQRL+HMV DK   R  G    +  QP+ GR+  GG+R
Sbjct: 977  ERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIR 1036

Query: 1086 FGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM----------AIANTRTHTY 1135
            FGEMERD  +AHG +  L +RLF  SD    HVC  CG +          + +  R   Y
Sbjct: 1037 FGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKY 1096

Query: 1136 ECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171
             C  C     I  V +PY  +    EL +M+I  ++
Sbjct: 1097 NCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132


>gi|212286172 RNA polymerase I polypeptide B isoform 2 [Homo sapiens]
          Length = 1079

 Score =  378 bits (971), Expect = e-104
 Identities = 320/1080 (29%), Positives = 481/1080 (44%), Gaps = 132/1080 (12%)

Query: 146  KTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 205
            K F+G +PIM++S  C L  L  + L E +E   + GGYFIING EKV+        N  
Sbjct: 75   KQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 134

Query: 206  YVFAKKDSK-----YAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
                +   K     Y   G    C+       + + +  L  G            ++   
Sbjct: 135  IAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVN-MNLHYLENG-----------TVMLNF 182

Query: 261  PYIKQE--VPIIIVFRALGFVSDRDILEHIIYDFEDPEMM-----EMVKPSLDEAFVIQE 313
             Y K+   +P+    +AL   SD  I + +I   ED   +     +M++  ++E    Q+
Sbjct: 183  IYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQK 242

Query: 314  QNVALNFIGSR-GAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRL 372
            Q   LN++G     K  V      + A E L  +    + +     T+K Y L  M  +L
Sbjct: 243  Q--VLNYLGECFRVKLNVPDWYPNEQAAEFLFNQC---ICIHLKSNTEKFYMLCLMTRKL 297

Query: 373  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLE 432
               A G    D+ D   N+ +   G L     +   +  L  ++I   K   +    ++ 
Sbjct: 298  FALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQK-TSVSMN 356

Query: 433  LAIKTRIISDGL------KYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASTLSHLRRL 485
                 RI + G+      +Y  ATGN   +      + +G+  V ++L F   LSH R +
Sbjct: 357  TDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCV 416

Query: 486  NSPIGRDGKLAKPR-----QLHNTLWGMVCPAETPEGHAVGLVKNL-ALMAYISVGSQPS 539
            +    R    AK R     +L    WG +CP  TP+G   GL+ +L A+   ++     +
Sbjct: 417  H----RGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTA 472

Query: 540  PILEFLEEWSMENLEEISPAAIADATKIFVNGCWVG-IHKD-PEQLMNTLRK---LRRQM 594
             I   L    +  ++     + ++   + ++G  VG + KD    + ++LR    LR + 
Sbjct: 473  SIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 532

Query: 595  DIIVSEVSMIRDIREREIR----IYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNN 650
                 EV +I    +  +     ++T   R+ RP+     Q L L K             
Sbjct: 533  IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLALGKE------------ 575

Query: 651  YSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI 710
                        E I T+E+  + +A+  D++      +    TH E+ P  +L V A+ 
Sbjct: 576  ------------ELIGTMEQIFMNVAIFEDEV------FAGVTTHQELFPHSLLSVIANF 617

Query: 711  IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR 770
            IPF DHNQSPRN YQ  MGKQ MG  +  +  R D   + L  PQ PLV     +Y    
Sbjct: 618  IPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD 677

Query: 771  ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFE 830
              P G N+IVA+ SYTGY+ ED++I+N+++ +RGF     Y+S       +  D  E  +
Sbjct: 678  NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFIDLSEKIK 730

Query: 831  KPTRETCQGMRHA---IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRY 887
            +       G++     +  KLDDDGL   G ++              +  D   S     
Sbjct: 731  QGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKL--------------QYGDPYYSYLNLN 776

Query: 888  TKRDCSTFLRTSETGIVDQVMVTLNQEG---YKFCKIRVRSVRIPQIGDKFASRHGQKGT 944
            T      + ++ E  +VD + V  N  G   +K   I +R  R P IGDKFASRHGQKG 
Sbjct: 777  TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 836

Query: 945  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF-- 1002
                +  EDMPFT  G+ PDI+ NPH  PSRMTIG LIE + GK +A  G   DATPF  
Sbjct: 837  LSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIF 896

Query: 1003 -NDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHS 1061
              +   ++    +L   GY+  G E LY+G +G ++ + IFIG  YYQRL+HMV DK   
Sbjct: 897  SEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQV 956

Query: 1062 RARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNL 1121
            R  G    +  QP+ GR+  GG+RFGEMERD  +AHG +  L +RLF  SD    HVC  
Sbjct: 957  RTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVK 1016

Query: 1122 CGIM----------AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171
            CG +          + +  R   Y C  C     I  V +PY  +    EL +M+I  ++
Sbjct: 1017 CGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1076


>gi|55770862 thyroglobulin [Homo sapiens]
          Length = 2768

 Score = 35.0 bits (79), Expect = 0.42
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 88   FEQIYLSKPTHW---------ERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEE 138
            F+Q+YL K +            +D  P P  P EA L    +S    VD+ + ++  G +
Sbjct: 1815 FQQVYLWKDSDMGSRPESMGCRKDTVPRPASPTEAGLTTELFSP---VDLNQVIVN-GNQ 1870

Query: 139  QLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQE 198
             L +Q    F         + +CL   + +   C+L E       YF      +  +  +
Sbjct: 1871 SLSSQKHWLFKHLFSAQQANLWCLSRCVQEHSFCQLAEITESASLYFTCTLYPEAQVCDD 1930

Query: 199  KMATN 203
             M +N
Sbjct: 1931 IMESN 1935


>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
          Length = 4624

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 581  EQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHI 640
            E+    L +  + +D I   ++ +++IRE +I I    G I     ++ +  LL+ +  I
Sbjct: 1237 EEFNKKLNRPIKDLDDIRIAMAALKEIREEQISIDFQVGPIEESYALLNRYGLLIAREEI 1296

Query: 641  DQLKEREYNNYSWQDLVA 658
            D++   +  +Y+W+ L+A
Sbjct: 1297 DKV---DTLHYAWEKLLA 1311


>gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]
          Length = 4024

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 11/53 (20%), Positives = 33/53 (62%)

Query: 35  DEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLK 87
           + + +++++++ + E +++  +R VE+      Q+E  ++ G++++  RYL K
Sbjct: 669 EHRKIIKEKIEQYQEGLKLRCERFVEELESYAKQSEEFYSFGDLQDVQRYLKK 721


>gi|171906593 branched chain ketoacid dehydrogenase kinase isoform b
           [Homo sapiens]
          Length = 365

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 31/197 (15%)

Query: 181 PGGYFIIN---GSEKVLIAQEKMATNTVYV-FAKKDSKYAYTGECRSCLENSS-RPTSTI 235
           PGG   +    G    L A+   AT+T +V  A++ SK   +   +S ++ ++ +P+  +
Sbjct: 11  PGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRL 70

Query: 236 WVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGF------VSDRDILEHI- 288
             +M+   G    +S  G  ++ +  Y++QE+P+ I  R  GF      +     + H+ 
Sbjct: 71  TPTMMLYAG----RSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVH 126

Query: 289 ---IYDFEDPEMMEMVKPSLDEAFVIQ---------EQNVALNFIGSRGAKPGVTKEKRI 336
              I  F+       +K   DEA   Q         +  V L   G R ++  +  EK +
Sbjct: 127 ELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV 186

Query: 337 KYAKEVLQKEMLPHVGV 353
           +Y    L K +   +G+
Sbjct: 187 RY---FLDKTLTSRLGI 200


>gi|171906589 branched chain ketoacid dehydrogenase kinase isoform a
           [Homo sapiens]
          Length = 412

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 31/197 (15%)

Query: 181 PGGYFIIN---GSEKVLIAQEKMATNTVYV-FAKKDSKYAYTGECRSCLENSS-RPTSTI 235
           PGG   +    G    L A+   AT+T +V  A++ SK   +   +S ++ ++ +P+  +
Sbjct: 11  PGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRL 70

Query: 236 WVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGF------VSDRDILEHI- 288
             +M+   G    +S  G  ++ +  Y++QE+P+ I  R  GF      +     + H+ 
Sbjct: 71  TPTMMLYAG----RSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVH 126

Query: 289 ---IYDFEDPEMMEMVKPSLDEAFVIQ---------EQNVALNFIGSRGAKPGVTKEKRI 336
              I  F+       +K   DEA   Q         +  V L   G R ++  +  EK +
Sbjct: 127 ELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV 186

Query: 337 KYAKEVLQKEMLPHVGV 353
           +Y    L K +   +G+
Sbjct: 187 RY---FLDKTLTSRLGI 200


>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
          Length = 822

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 800 AVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVR 859
           AVDR   R V     K+++ KKG  +E+  +K    T      ++Y +L ++GL+   ++
Sbjct: 454 AVDRERERPVKAGKKKDKKGKKGKKKEKKAKKDKDLTADRTIESLYKELVEEGLLIQALK 513

Query: 860 VSGDDVI 866
           V+  D I
Sbjct: 514 VNLSDYI 520


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,004,339
Number of Sequences: 37866
Number of extensions: 1985852
Number of successful extensions: 4479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4425
Number of HSP's gapped (non-prelim): 19
length of query: 1174
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1061
effective length of database: 13,968,660
effective search space: 14820748260
effective search space used: 14820748260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.