Guide to the Human Genome
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Name: PEBP1 Sequence: fasta or formatted (187aa) NCBI GI: 4505621
Description:

prostatic binding protein

Referenced in:

Lipid Metabolism
Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          8           2
 C cysteine            1.1          2           1
 D aspartate           8.0         15           2
 E glutamate           4.8          9           1
 F phenylalanine       1.6          3           1
 G glycine             8.0         15           1
 H histidine           3.2          6           2
 I isoleucine          1.6          3           1
 K lysine              8.0         15           2
 L leucine            10.2         19           1
 M methionine          1.1          2           1
 N asparagine          2.1          4           1
 P proline             8.0         15           2
 Q glutamine           3.7          7           1
 R arginine            4.8          9           1
 S serine              8.0         15           2
 T threonine           4.8          9           1
 V valine              8.6         16           2
 W tryptophan          2.7          5           1
 Y tyrosine            5.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostatic binding protein 
MRPL38                0.148   mitochondrial ribosomal protein L38 
PEBP4                 0.148   phosphatidylethanolamine-binding protein 4 
MAP3K9                0.016   mitogen-activated protein kinase kinase kinase 9 [Ho...
TECPR2                0.013   tectonin beta-propeller repeat containing 2 
NSUN5C                0.011   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.011   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
ORC3L                 0.008   origin recognition complex, subunit 3 isoform 1 [Hom...
ORC3L                 0.008   origin recognition complex, subunit 3 isoform 2 [Hom...
C3orf25               0.005   hypothetical protein LOC90288 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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