Guide to the Human Genome
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Name: MYL6B Sequence: fasta or formatted (208aa) NCBI GI: 4505303
Description:

smooth muscle and non-muscle myosin alkali light chain 6B

Referenced in:

Myosin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         19           3
 C cysteine            1.0          2           1
 D aspartate           5.3         11           1
 E glutamate          10.1         21           3
 F phenylalanine       4.3          9           1
 G glycine             7.7         16           1
 H histidine           1.4          3           1
 I isoleucine          2.4          5           1
 K lysine             10.1         21           2
 L leucine             8.2         17           1
 M methionine          2.4          5           1
 N asparagine          3.8          8           1
 P proline             8.2         17           2
 Q glutamine           3.8          8           1
 R arginine            3.4          7           2
 S serine              3.8          8           1
 T threonine           4.3          9           2
 V valine              8.7         18           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   smooth muscle and non-muscle myosin alkali light chai... 
MYL1                  0.594   fast skeletal myosin alkali light chain 1 isoform 1f...
MYL6                  0.581   myosin, light chain 6, alkali, smooth muscle and non...
MYL4                  0.574   atrial/embryonic alkali myosin light chain 
MYL4                  0.574   atrial/embryonic alkali myosin light chain 
MYL6                  0.556   myosin, light chain 6, alkali, smooth muscle and non...
MYL3                  0.556   slow skeletal ventricular myosin alkali light chain 3...
MYL1                  0.510   fast skeletal myosin alkali light chain 1 isoform 3f...
CALM3                 0.251   calmodulin 3 
CALM2                 0.251   calmodulin 2 
CALM1                 0.251   calmodulin 1 
CALML3                0.249   calmodulin-like 3 
TNNC2                 0.173   fast skeletal muscle troponin C 
TNNC1                 0.160   troponin C, slow 
CETN1                 0.142   centrin 1 
CALML4                0.137   calmodulin-like 4 isoform 1 
CETN3                 0.135   centrin 3 
CABP2                 0.132   calcium binding protein 2 isoform 1 
CABP2                 0.129   calcium binding protein 2 isoform 2 
CETN2                 0.129   caltractin 
CABP4                 0.124   calcium binding protein 4 
MYL12B                0.122   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.122   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.122   myosin regulatory light chain MRCL2 isoform A 
CABP5                 0.122   calcium binding protein 5 
CALML5                0.119   calmodulin-like 5 
LOC391722             0.119   PREDICTED: similar to myosin regulatory light chain...
MYL12B                0.119   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12A                0.119   myosin, light chain 12A, regulatory, non-sarcomeric [...
LOC391722             0.119   PREDICTED: similar to myosin regulatory light chain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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