Search of human proteins with 4505067

Search of human proteins with 4505067

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505067 MAD2-like 1 [Homo sapiens]
         (205 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505067 MAD2-like 1 [Homo sapiens]                                 403   e-113
gi|187960079 MAD2 homolog [Homo sapiens]                               55   4e-08
gi|187960073 MAD2 homolog [Homo sapiens]                               55   4e-08
gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Ho...    35   0.058
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]           31   0.84 
gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]           31   0.84 
gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]            31   0.84 
gi|62460633 RNA-binding motif protein 16 [Homo sapiens]                29   3.2  
gi|194272142 myosin IXB isoform 2 [Homo sapiens]                       28   4.2  
gi|33356170 myosin IXB isoform 1 [Homo sapiens]                        28   4.2  
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        28   5.5  
gi|54607080 pancreatic carboxypeptidase B1 preproprotein [Homo s...    27   9.3  

>gi|4505067 MAD2-like 1 [Homo sapiens]
          Length = 205

 Score =  403 bits (1036), Expect = e-113
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60
           MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE
Sbjct: 1   MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60

Query: 61  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120
           LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS
Sbjct: 61  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120

Query: 121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180
           QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE
Sbjct: 121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query: 181 VRLRSFTTTIHKVNSMVAYKIPVND 205
           VRLRSFTTTIHKVNSMVAYKIPVND
Sbjct: 181 VRLRSFTTTIHKVNSMVAYKIPVND 205


>gi|187960079 MAD2 homolog [Homo sapiens]
          Length = 211

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 17  AEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWL 76
           A+++ EF    ++ ILY R +YP   F + +KY + + ++   EL +Y+ + +  +K  L
Sbjct: 16  ADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  YKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQIT 136
            K  V+K+VVVI + E   V E++ F+I         S   +     ++  +R+ I +I+
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSLLSHVEQLLRAFILKIS 131

Query: 137 ATVTFLPLLEVSCSFDLLIYT 157
                L      C+F +L++T
Sbjct: 132 VCDAVLDHNPPGCTFTVLVHT 152


>gi|187960073 MAD2 homolog [Homo sapiens]
          Length = 211

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 17  AEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWL 76
           A+++ EF    ++ ILY R +YP   F + +KY + + ++   EL +Y+ + +  +K  L
Sbjct: 16  ADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  YKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQIT 136
            K  V+K+VVVI + E   V E++ F+I         S   +     ++  +R+ I +I+
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSLLSHVEQLLRAFILKIS 131

Query: 137 ATVTFLPLLEVSCSFDLLIYT 157
                L      C+F +L++T
Sbjct: 132 VCDAVLDHNPPGCTFTVLVHT 152


>gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Homo
            sapiens]
          Length = 3549

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 24/130 (18%)

Query: 24   FSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNV------VEQLKD--- 74
            F   I+     RGI   E  T   K    L  T  L+ IKY ++V       EQ +D   
Sbjct: 1029 FDESIHKFQIIRGISAQEIQTGNVKSAKWLFETQPLDSIKYFSDVEETESKTEQTRDIVK 1088

Query: 75   -------WLYKCS-VQKLVVVISNIESGEVLER-------WQFDIECDKTAKDDSAPREK 119
                   WL++   ++ L   +S + S E + +       W F+ +   T KDDS    K
Sbjct: 1089 GDVKTCKWLFETQPMESLYEKVSLMTSSEEIHKGDVKTCTWLFETQPLDTIKDDSETAVK 1148

Query: 120  SQKAIQDEIR 129
             Q   Q+EI+
Sbjct: 1149 LQTVKQEEIQ 1158


>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 5   LSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLL---------V 55
           L++E  + + G     +EFF     +++Y   + P +T  +++   L  L         +
Sbjct: 27  LTKEPDVII-GEGPTDSEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEI 85

Query: 56  TTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDD 113
              L L +YL  + E+LK W+     +    +++ +E+ + + + + D   D T+ DD
Sbjct: 86  IELLVLEQYLTIIPEKLKPWVRAKKPENCEKLVTLLENYKEMYQPEDDNNSDVTSDDD 143


>gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 5   LSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLL---------V 55
           L++E  + + G     +EFF     +++Y   + P +T  +++   L  L         +
Sbjct: 27  LTKEPDVII-GEGPTDSEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEI 85

Query: 56  TTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDD 113
              L L +YL  + E+LK W+     +    +++ +E+ + + + + D   D T+ DD
Sbjct: 86  IELLVLEQYLTIIPEKLKPWVRAKKPENCEKLVTLLENYKEMYQPEDDNNSDVTSDDD 143


>gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 10/118 (8%)

Query: 5   LSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLL---------V 55
           L++E  + + G     +EFF     +++Y   + P +T  +++   L  L         +
Sbjct: 27  LTKEPDVII-GEGPTDSEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEI 85

Query: 56  TTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDD 113
              L L +YL  + E+LK W+     +    +++ +E+ + + + + D   D T+ DD
Sbjct: 86  IELLVLEQYLTIIPEKLKPWVRAKKPENCEKLVTLLENYKEMYQPEDDNNSDVTSDDD 143


>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
          Length = 1271

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 29  NSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVI 88
           NS LY    Y       + K  +T +    ++ IK+  +VV+ ++ ++ KC  +  V  +
Sbjct: 8   NSELYSLNDYKPP----ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGL 63

Query: 89  SNIESGEVLERWQFDIECDKTAKDDSAPR 117
             I+S     R QF  E     KD  APR
Sbjct: 64  YVIDSIVRQSRHQFGQE-----KDVFAPR 87


>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
          Length = 2022

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 161  LVVPEKWEESGPQFITNSEEVR-LRSFTTTIHKVNSMVAYKIPV 203
            + V EKW ES  + ITN+ E++ L  F   ++K+N + + K P+
Sbjct: 1491 ITVSEKWRESVFRQITNANELKYLDEF--LLNKINDLRSQKTPI 1532


>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
          Length = 2157

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 161  LVVPEKWEESGPQFITNSEEVR-LRSFTTTIHKVNSMVAYKIPV 203
            + V EKW ES  + ITN+ E++ L  F   ++K+N + + K P+
Sbjct: 1491 ITVSEKWRESVFRQITNANELKYLDEF--LLNKINDLRSQKTPI 1532


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 107 DKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVS----------CSFDLLIY 156
           +KT KD+SA +E+ +  +  +  SV R      T LP ++ S          C+     Y
Sbjct: 282 EKTPKDESANQEEPEARVPAQSESVRRPWEKNSTTLPRMKSSSSVTTSETQPCTPSSSDY 341

Query: 157 TDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNS 195
           +D   V  E  EE   +     EE+ + +F   + K  S
Sbjct: 342 SDLQRVKQELLEEVKKELQKVKEEI-IEAFVQELRKRGS 379


>gi|54607080 pancreatic carboxypeptidase B1 preproprotein [Homo
           sapiens]
          Length = 417

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 106 CDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVT 140
           CD+T    +A  EK  KA+ D IR+ +  I A +T
Sbjct: 268 CDETYCGPAAESEKETKALADFIRNKLSSIKAYLT 302


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,577,199
Number of Sequences: 37866
Number of extensions: 243149
Number of successful extensions: 636
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 12
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.