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Search of human proteins with 4504421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504421 hepatic leukemia factor [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504421 hepatic leukemia factor [Homo sapiens] 607 e-174
gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens] 298 5e-81
gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens] 296 1e-80
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 248 5e-66
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ... 62 6e-10
gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens] 62 8e-10
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 49 5e-06
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 47 3e-05
gi|5453563 basic leucine zipper transcription factor, ATF-like [... 46 3e-05
gi|8924246 basic leucine zipper transcription factor, ATF-like 3... 46 3e-05
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 46 4e-05
gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens] 46 4e-05
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 45 8e-05
gi|4885245 FOS-like antigen 2 [Homo sapiens] 45 8e-05
gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog ... 44 2e-04
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 43 3e-04
gi|22538422 activating transcription factor 2 [Homo sapiens] 43 4e-04
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 42 5e-04
gi|33469974 activating transcription factor 4 [Homo sapiens] 41 0.001
gi|33469976 activating transcription factor 4 [Homo sapiens] 41 0.001
gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B is... 41 0.001
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 40 0.003
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 40 0.003
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 39 0.004
gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 39 0.005
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 39 0.005
gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain ... 39 0.007
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 38 0.009
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 38 0.009
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 38 0.009
>gi|4504421 hepatic leukemia factor [Homo sapiens]
Length = 295
Score = 607 bits (1564), Expect = e-174
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVP 60
MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVP
Sbjct: 1 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVP 60
Query: 61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAA 120
QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAA
Sbjct: 61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAA 120
Query: 121 PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPA 180
PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPA
Sbjct: 121 PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPA 180
Query: 181 DLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAK 240
DLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAK
Sbjct: 181 DLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAK 240
Query: 241 RSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
RSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
Sbjct: 241 RSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
>gi|223972670 thyrotrophic embryonic factor isoform 2 [Homo sapiens]
Length = 273
Score = 298 bits (762), Expect = 5e-81
Identities = 158/278 (56%), Positives = 200/278 (71%), Gaps = 13/278 (4%)
Query: 21 VLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSP-TVPQSAFLGPTLWDKTLPYDGD 79
VL+SLLE+ L P D K+K KEK +DE+ + T+ SA L P +WDKT+PYDG+
Sbjct: 6 VLKSLLEHSLPWPEKRTD---KEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGE 62
Query: 80 TFQLEYMDLEEFLSENGIPPSPSQHDHSPHPP--GLQPASSAAPSVMDLSSRASAPLHPG 137
+F LEYMDL+EFL ENGIP SP+ H+ P L+ SA+ S S ++A P
Sbjct: 63 SFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQPS 122
Query: 138 IPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRK 197
+ S L R TPSPIDP+ ++V V + PDPADL LSS+PG E+F+PRK
Sbjct: 123 ETVSSTESS-------LEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRK 175
Query: 198 RKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRA 257
KF+EE+LKPQPMIKKA+KVF+PD+ KD+KYW RR+KNN+AAKRSRDARRLKENQI IRA
Sbjct: 176 HKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRA 235
Query: 258 SFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
+FLEKEN+ALR EVA+LRKE+GKCK I++KYE ++GPL
Sbjct: 236 AFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 273
>gi|4507431 thyrotrophic embryonic factor isoform 1 [Homo sapiens]
Length = 303
Score = 296 bits (759), Expect = 1e-80
Identities = 156/278 (56%), Positives = 199/278 (71%), Gaps = 15/278 (5%)
Query: 21 VLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSP-TVPQSAFLGPTLWDKTLPYDGD 79
VL+ L+ENP + E K+K KEK +DE+ + T+ SA L P +WDKT+PYDG+
Sbjct: 38 VLKKLMENPPR-----EARLDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGE 92
Query: 80 TFQLEYMDLEEFLSENGIPPSPSQHDHSPHPP--GLQPASSAAPSVMDLSSRASAPLHPG 137
+F LEYMDL+EFL ENGIP SP+ H+ P L+ SA+ S S ++A P
Sbjct: 93 SFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQPS 152
Query: 138 IPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRK 197
+ S L R TPSPIDP+ ++V V + PDPADL LSS+PG E+F+PRK
Sbjct: 153 ETVSSTESS-------LEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRK 205
Query: 198 RKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRA 257
KF+EE+LKPQPMIKKA+KVF+PD+ KD+KYW RR+KNN+AAKRSRDARRLKENQI IRA
Sbjct: 206 HKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRA 265
Query: 258 SFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
+FLEKEN+ALR EVA+LRKE+GKCK I++KYE ++GPL
Sbjct: 266 AFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL 303
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 248 bits (633), Expect = 5e-66
Identities = 131/239 (54%), Positives = 171/239 (71%), Gaps = 9/239 (3%)
Query: 59 VPQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDH-SPHP-PGLQPA 116
VP L P LW++TLP+ GD +EY+DL+ FL E+G+PPSP SP P P PA
Sbjct: 94 VPAPGLLAPLLWERTLPF-GD---VEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPA 149
Query: 117 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176
S P +S S+P H + S R G +R+TPSP+DPDT++V + +E
Sbjct: 150 PSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGL---TSRDTPSPVDPDTVEVLMTFE 206
Query: 177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNN 236
PDPADLALSSIPG E FDPR+ +FSEEELKPQP++KKARK+ +P++ KD+KYW+RR KNN
Sbjct: 207 PDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEKYWSRRYKNN 266
Query: 237 MAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL 295
AAKRSRDARRLKENQI++RA+FLEKEN+ LRQEV +R+EL + +L++Y+A+HG L
Sbjct: 267 EAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGAL 325
>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
sapiens]
Length = 369
Score = 62.0 bits (149), Expect = 6e-10
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 209 PMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALR 268
P I++ R+ F+P++ KD YW +RRKNN AAKRSR+ RRL + I R + L +EN+ L+
Sbjct: 61 PSIRRQRE-FMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAAIEGRLAALMEENALLK 119
Query: 269 QEVADLRKELG 279
E+ L+ G
Sbjct: 120 GELKALKLRFG 130
>gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens]
Length = 462
Score = 61.6 bits (148), Expect = 8e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 273 DLRKELG 279
L+ + G
Sbjct: 121 SLKLKFG 127
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/190 (26%), Positives = 73/190 (38%), Gaps = 36/190 (18%)
Query: 98 PPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSP--IRPGQLLP 155
PP P H H PHPP PA AAP H +C Q+ ++PG P
Sbjct: 185 PPPPPSHPH-PHPP---PAHLAAP-------------HLQFQIAHCGQTTMHLQPGHPTP 227
Query: 156 ANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQ-EMFDPRKRKFSEEELKPQPMIKKA 214
PSP P PA L + +PG + KA
Sbjct: 228 PPTPVPSP------------HPAPA-LGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKA 274
Query: 215 RKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADL 274
+K D ++Y RR +NN+A ++SRD + + + + L +N LR+ V L
Sbjct: 275 KKSV---DKNSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQL 331
Query: 275 RKELGKCKNI 284
+EL + I
Sbjct: 332 SRELDTLRGI 341
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 46.6 bits (109), Expect = 3e-05
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 41/221 (18%)
Query: 91 FLSENGIPPSPSQHDHSPHPPGLQPASSAAPSV----------MDLSSRASAPLHPGIPS 140
F G PP+PS PP L PA+++ P+ + +++ L P + S
Sbjct: 488 FSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNPCLTQLLTAAKPEQALEPPLVS 547
Query: 141 PNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSS---IPGQEMFDPRK 197
++SP P + +P T P P P P PA LA S +P E P
Sbjct: 548 STLLRSPGSPQETVPEFPCTFLP--PTPAPTPPRPPPGPATLAPSRPLLVPKAERLSPPA 605
Query: 198 RKFSEEELK------------------PQPMIKKARKVFIPDDLKDDK--YWARRRKNNM 237
SE L PQP++ + R PD K+ + + + +K
Sbjct: 606 PSGSERRLSGDLSSMPGPGTLSVRVSPPQPILSRGR----PDSNKNRRITHISAEQKRRF 661
Query: 238 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKEL 278
K D + ++ + S KE + L++E LR E+
Sbjct: 662 NIKLGFDTLHGLVSTLSAQPSL--KERAGLQEEAQQLRDEI 700
>gi|5453563 basic leucine zipper transcription factor, ATF-like
[Homo sapiens]
Length = 125
Score = 46.2 bits (108), Expect = 3e-05
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 221 DDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGK 280
D D + RR KN +AA++SR + K + + + + LEK+N+ALR+E+ L +EL
Sbjct: 22 DSSDDVRRVQRREKNRIAAQKSRQRQTQKADTLHLESEDLEKQNAALRKEIKQLTEELKY 81
Query: 281 CKNILAKYE 289
++L +E
Sbjct: 82 FTSVLNSHE 90
>gi|8924246 basic leucine zipper transcription factor, ATF-like 3
[Homo sapiens]
Length = 127
Score = 46.2 bits (108), Expect = 3e-05
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 206 KPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENS 265
+PQP ++ P+D DD+ RR KN +AA+RSR + K +++ LE+EN+
Sbjct: 22 QPQPQPQQQS----PED--DDRKVRRREKNRVAAQRSRKKQTQKADKLHEEYESLEQENT 75
Query: 266 ALRQEVADLRKELGKCKNILAKYE 289
LR+E+ L +EL L ++E
Sbjct: 76 MLRREIGKLTEELKHLTEALKEHE 99
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 45.8 bits (107), Expect = 4e-05
Identities = 53/223 (23%), Positives = 83/223 (37%), Gaps = 43/223 (19%)
Query: 91 FLSENGIPPSPSQHDHSPHPPGLQPASSAAPSV----------MDLSSRASAPLHPGIPS 140
F G PP+PS PP L PA+++ P+ + +++ L P + S
Sbjct: 488 FSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNPCLTQLLTAAKPEQALEPPLVS 547
Query: 141 PNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSS---IPGQEMFDPRK 197
++SP P + +P T P P P P PA LA S +P E P
Sbjct: 548 STLLRSPGSPQETVPEFPCTFLP--PTPAPTPPRPPPGPATLAPSRPLLVPKAERLSPPA 605
Query: 198 RKFSEEELK------------------PQPMIKKARKVFIPDDLKDDK----YWARRRKN 235
SE L PQP++ + R PD K + + + +K
Sbjct: 606 PSGSERRLSGDLSSMPGPGTLSVRVSPPQPILSRGR----PDSNKTENRRITHISAEQKR 661
Query: 236 NMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKEL 278
K D + ++ + S KE + L++E LR E+
Sbjct: 662 RFNIKLGFDTLHGLVSTLSAQPSL--KERAGLQEEAQQLRDEI 702
>gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]
Length = 150
Score = 45.8 bits (107), Expect = 4e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
K K P D D+Y RR +NNMA K+SR + K R + L++EN L ++
Sbjct: 50 KQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIK 109
Query: 273 DLRKELGKCKNILAKY 288
L KEL K++ ++
Sbjct: 110 LLTKELSVLKDLFLEH 125
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 45.1 bits (105), Expect = 8e-05
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 207 PQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSA 266
P + KA+K D D+Y RR +NN+A ++SRD +++ + + L EN
Sbjct: 256 PSQVKSKAKKTV---DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENER 312
Query: 267 LRQEVADLRKELGKCKNI 284
L+++V L +EL +N+
Sbjct: 313 LQKKVEQLSRELSTLRNL 330
>gi|4885245 FOS-like antigen 2 [Homo sapiens]
Length = 326
Score = 45.1 bits (105), Expect = 8e-05
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 34/132 (25%)
Query: 175 YEPDPADLALSSIPGQEMFDPRK-----------RKFSEEELKPQPMIKKARKVFIPDDL 223
Y P P L+S+PG M PR R+ +E+L P+
Sbjct: 82 YSPLPG---LASVPGH-MALPRPGVIKTIGTTVGRRRRDEQLSPE--------------- 122
Query: 224 KDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKN 283
+++K RR +N +AA + R+ RR ++ LE+E S L++E+A+L+KE K +
Sbjct: 123 EEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKLEF 182
Query: 284 ILAKYEARHGPL 295
+L HGP+
Sbjct: 183 ML----VAHGPV 190
>gi|4885241 v-fos FBJ murine osteosarcoma viral oncogene homolog
[Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 224 KDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKN 283
+++K RR +N MAA + R+ RR + + LE E SAL+ E+A+L KE K +
Sbjct: 136 EEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 195
Query: 284 ILAKY 288
ILA +
Sbjct: 196 ILAAH 200
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 41/184 (22%)
Query: 91 FLSENGIPPSPSQHDHSPHPPGLQPASSAAPSV----------MDLSSRASAPLHPGIPS 140
F G PP+PS PP L PA+++ P+ + +++ L P + S
Sbjct: 488 FSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNPCLTQLLTAAKPEQALEPPLVS 547
Query: 141 PNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSS---IPGQEMFDPRK 197
++SP P + +P T P P P P PA LA S +P E P
Sbjct: 548 STLLRSPGSPQETVPEFPCTFLP--PTPAPTPPRPPPGPATLAPSRPLLVPKAERLSPPA 605
Query: 198 RKFSEEELK------------------PQPMIKKARKVFIPDDLKDDKYWARRRKNNMAA 239
SE L PQP++ + R PD K + RR +++A
Sbjct: 606 PSGSERRLSGDLSSMPGPGTLSVRVSPPQPILSRGR----PDSNKTE----NRRITHISA 657
Query: 240 KRSR 243
++ R
Sbjct: 658 EQKR 661
>gi|22538422 activating transcription factor 2 [Homo sapiens]
Length = 505
Score = 42.7 bits (99), Expect = 4e-04
Identities = 71/315 (22%), Positives = 112/315 (35%), Gaps = 38/315 (12%)
Query: 7 PLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTV----PQS 62
PL L+P P ++RS +E P + H+D S E DE P P S
Sbjct: 108 PLDLSPLATP----IIRSKIEEPSVVETTHQD--SPLPHPESTTSDEKEVPLAQTAQPTS 161
Query: 63 AFLGPTLWD--KTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHD-------------HS 107
A + P L D+ + + S I +PS + H
Sbjct: 162 AIVRPASLQVPNVLLTSSDSSVIIQQAVPSPTSSTVITQAPSSNRPIVPVPGPFPLLLHL 221
Query: 108 PHP---PGLQPAS---------SAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLP 155
P+ P PAS +A P V ++ S P PG SP +QS +
Sbjct: 222 PNGQTMPVAIPASITSSNVHVPAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAA 281
Query: 156 ANRNTPSPIDPDTIQVP-VGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKA 214
+ P + DT++ G ++ + Q + S PQ
Sbjct: 282 LTQQHPPVTNGDTVKGHGSGLVRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 341
Query: 215 RKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADL 274
R+ ++ D+K +N AA R R R++ + +A L N L+ EV L
Sbjct: 342 RRRRAANEDPDEKRRKFLERNRAAASRCRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLL 401
Query: 275 RKELGKCKNILAKYE 289
R E+ + K +L ++
Sbjct: 402 RNEVAQLKQLLLAHK 416
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 42.4 bits (98), Expect = 5e-04
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 43/184 (23%)
Query: 91 FLSENGIPPSPSQHDHSPHPPGLQPASSAAPSV----------MDLSSRASAPLHPGIPS 140
F G PP+PS PP L PA+++ P+ + +++ L P + S
Sbjct: 488 FSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNPCLTQLLTAAKPEQALEPPLVS 547
Query: 141 PNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSS---IPGQEMFDPRK 197
++SP P + +P T P P P P PA LA S +P E P
Sbjct: 548 STLLRSPGSPQETVPEFPCTFLP--PTPAPTPPRPPPGPATLAPSRPLLVPKAERLSPPA 605
Query: 198 RKFSEEELK------------------PQPMIKKARKVFIPDDLKDDKYWARRRKNNMAA 239
SE L PQP++ + R PD K+ RR +++A
Sbjct: 606 PSGSERRLSGDLSSMPGPGTLSVRVSPPQPILSRGR----PDSNKN------RRITHISA 655
Query: 240 KRSR 243
++ R
Sbjct: 656 EQKR 659
>gi|33469974 activating transcription factor 4 [Homo sapiens]
Length = 351
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)
Query: 139 PSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKR 198
PS N + P L + +++PS T P P P L S+ P + +DP
Sbjct: 214 PSDNDSGICMSPESYLGSPQHSPS-----TRGSPNRSLPSPGVLCGSARP--KPYDPPGE 266
Query: 199 KFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRAS 258
K ++K + + KK +K+ +N AA R R +R ++ +
Sbjct: 267 KMVAAKVKGEKLDKKLKKM---------------EQNKTAATRYRQKKRAEQEALTGECK 311
Query: 259 FLEKENSALRQEVADLRKELGKCKNILAKYEARHG 293
LEK+N AL++ L KE+ K+++ + G
Sbjct: 312 ELEKKNEALKERADSLAKEIQYLKDLIEEVRKARG 346
>gi|33469976 activating transcription factor 4 [Homo sapiens]
Length = 351
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)
Query: 139 PSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKR 198
PS N + P L + +++PS T P P P L S+ P + +DP
Sbjct: 214 PSDNDSGICMSPESYLGSPQHSPS-----TRGSPNRSLPSPGVLCGSARP--KPYDPPGE 266
Query: 199 KFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRAS 258
K ++K + + KK +K+ +N AA R R +R ++ +
Sbjct: 267 KMVAAKVKGEKLDKKLKKM---------------EQNKTAATRYRQKKRAEQEALTGECK 311
Query: 259 FLEKENSALRQEVADLRKELGKCKNILAKYEARHG 293
LEK+N AL++ L KE+ K+++ + G
Sbjct: 312 ELEKKNEALKERADSLAKEIQYLKDLIEEVRKARG 346
>gi|166999613 FBJ murine osteosarcoma viral oncogene homolog B
isoform 1 [Homo sapiens]
Length = 338
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 196 RKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAI 255
R R+ EE L P+ +++K RR +N +AA + R+ RR +++
Sbjct: 141 RPRRPREETLTPE---------------EEEKRRVRRERNKLAAAKCRNRRRELTDRLQA 185
Query: 256 RASFLEKENSALRQEVADLRKELGKCKNILAKYE 289
LE+E + L E+A+L+KE + + +L ++
Sbjct: 186 ETDQLEEEKAELESEIAELQKEKERLEFVLVAHK 219
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 100 SPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRN 159
+P++ + P P + PA ++AP+ ASAP +P+P + +P + +
Sbjct: 416 TPAEPEVGPAAPAMAPAPASAPAP------ASAPAPAPVPTPAMVSAPSSTVNASASVKT 469
Query: 160 TPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFI 219
+ DP+ A + + +R+ E E + Q +++ ++ +
Sbjct: 470 SAGTTDPEE--------------ATRLLAEKRRLAREQREKEERERREQEELERQKREEL 515
Query: 220 PDDLKDDKYWARR-----------RKNNMAAKRSRDARRLKENQIAIRASFLEKENSALR 268
+ +++ R R+ +R + R L+E + A RA ++E + +R
Sbjct: 516 AQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALREREEAERAQRQKEEEARVR 575
Query: 269 QEVADLRKELGK 280
+E +R+E K
Sbjct: 576 EEAERVRQEREK 587
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 39.7 bits (91), Expect = 0.003
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 222 DLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKC 281
D K+ + +++KN AA+RSR K + + + LEK+N ALR+E+ L+ EL
Sbjct: 14 DPKEQQRQLKKQKNRAAAQRSRQKHTDKADALHQQHESLEKDNLALRKEIQSLQAELAWW 73
Query: 282 KNILAKYE 289
L +E
Sbjct: 74 SRTLHVHE 81
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.3 bits (90), Expect = 0.004
Identities = 56/208 (26%), Positives = 73/208 (35%), Gaps = 27/208 (12%)
Query: 99 PSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIR------PGQ 152
P P +H S P + SSA+ S SS +S P P SP R P
Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA 392
Query: 153 LLPANRNTPSPIDPDTIQVPVGYEPDPAD------LALSSIPGQEMFDPRKRKFSEEELK 206
P R+ PSP P T + P P +S PG+ K K +E+
Sbjct: 393 SPPRRRHRPSP--PATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRES 450
Query: 207 PQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSA 266
P P K RKV + + +D + MAA S RR Q +S +S
Sbjct: 451 PSP-APKPRKVELSESEED-------KGGKMAAADSVQQRRQYRRQNQQSSS-----DSG 497
Query: 267 LRQEVADLRKELGKCKNILAKYEARHGP 294
D R + KN RH P
Sbjct: 498 SSSSSEDERPKRSHVKNGEVGRRRRHSP 525
Score = 28.1 bits (61), Expect = 9.6
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 14/130 (10%)
Query: 98 PPSPSQHDHSPHPPGLQPASSAAP------SVMDLSSRASAPLHPGIPSPNCMQSPIRPG 151
PP P + SP PP + S + P V S + + H SP+ R
Sbjct: 617 PPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSP 676
Query: 152 QLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMF-DPRKRKFSEEELKPQPM 210
Q P R++PSP P Q P P SS P + P R P+P
Sbjct: 677 Q--PNKRHSPSP-RPRAPQ--TSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEP- 730
Query: 211 IKKARKVFIP 220
KK +K P
Sbjct: 731 -KKIKKAASP 739
>gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform b [Homo sapiens]
Length = 961
Score = 38.9 bits (89), Expect = 0.005
Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
Query: 93 SENGIPPSPSQH-DHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPG 151
S PP P ++ P P P + PSVM+ S+ S P PGI P +P
Sbjct: 780 STTSAPPLPPRNVGKDPLTPTPPPPVAKTPSVMEALSQPSKPAPPGISQIRPPPLPPQPP 839
Query: 152 QLLPANRNTPSPIDPDTIQVPVGYEPDPADLA-------LSSIPGQEMFDPRKRKFSEEE 204
LP + P D T G P DL+ LS+ + P RK +
Sbjct: 840 SRLPQKKPAPG-ADKSTPLTNKGQPRGPVDLSATEALGPLSNAMVLQPPAPMPRKSQATK 898
Query: 205 LKPQ 208
LKP+
Sbjct: 899 LKPK 902
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 38.9 bits (89), Expect = 0.005
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 116 ASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPI------RPGQLLPANRNTPSPIDPDTI 169
A A P + L + PL PG +P ++ PG LLPA + +
Sbjct: 92 AGGAGPLEL-LPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQ---VAACAQTVV 147
Query: 170 QVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYW 229
+ +P P + P PR+ P P +K+ PD +Y
Sbjct: 148 SLAAAGQPTPP-----TSPEPPRSSPRQTP------APGPAREKSAGKRGPDR-GSPEYR 195
Query: 230 ARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKEL 278
RR +NN+A ++SRD + + ++ + L EN L Q V L ++L
Sbjct: 196 QRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDL 244
>gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform a [Homo sapiens]
Length = 1006
Score = 38.5 bits (88), Expect = 0.007
Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 61 QSAFLGPTLWD-KTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHP--PGLQPAS 117
Q+A TLW ++ DG + Q D PP P S +P P P
Sbjct: 796 QTASSANTLWKTNSVSVDGGSRQRSSSDPPAVH-----PPLPPLRVTSTNPLTPTPPPPV 850
Query: 118 SAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEP 177
+ PSVM+ S+ S P PGI P +P LP + P D T G
Sbjct: 851 AKTPSVMEALSQPSKPAPPGISQIRPPPLPPQPPSRLPQKKPAPG-ADKSTPLTNKGQPR 909
Query: 178 DPADLA-------LSSIPGQEMFDPRKRKFSEEELKPQ 208
P DL+ LS+ + P RK +LKP+
Sbjct: 910 GPVDLSATEALGPLSNAMVLQPPAPMPRKSQATKLKPK 947
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 38.1 bits (87), Expect = 0.009
Identities = 54/201 (26%), Positives = 76/201 (37%), Gaps = 37/201 (18%)
Query: 70 WDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSR 129
+D LP G T + + L E+ P P+QH ++ + L +AP + S
Sbjct: 4860 FDAVLP--GYTLKSQLDILSLLKQESPAPEPPTQHSYTYNVSNLDVRQLSAPPPEEPSPP 4917
Query: 130 ASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEPDPADLALSSIPG 189
S PL P SP P P LP P+ P P+ L L+S P
Sbjct: 4918 PS-PLAPSPASP-----PTEPLVELPTE--------------PLAEPPVPSPLPLASSPE 4957
Query: 190 QEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLK 249
PR R E E P +KK + V W R R K S R+
Sbjct: 4958 SARPKPRARPPEEGEDSRPPRLKKWKGV----------RWKRLRLLLTIQKGS--GRQED 5005
Query: 250 ENQIAIRASFLEKENSALRQE 270
E ++ A F+E+ +ALR +
Sbjct: 5006 EREV---AEFMEQLGTALRPD 5023
Score = 35.4 bits (80), Expect = 0.060
Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 25/105 (23%)
Query: 92 LSENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRP- 150
L E G P P P PPG A S P + P+HP P P+ Q P RP
Sbjct: 4274 LQELGAGPRPQGPPRLPAPPG---ALSTGPVL--------GPVHP-TPPPSSPQEPKRPS 4321
Query: 151 ------------GQLLPANRNTPSPIDPDTIQVPVGYEPDPADLA 183
QL P + TP P P P P A LA
Sbjct: 4322 QLPSPSSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRVSPAAAQLA 4366
Score = 32.0 bits (71), Expect = 0.67
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 98 PPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPAN 157
PP + D P PP + P S +P AS L +P P C SP+ L+P N
Sbjct: 985 PPEANCTDPEPVPPMILPPSPGSP-----VGPASPILMEPLP-PQC--SPLLQHSLVPQN 1036
Query: 158 RNTPSPIDPDTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEE 204
+ PS P + + V P + E+ + K SE E
Sbjct: 1037 -SPPSQCSPPALPLSVPSPLSPIGKVVGVSDEAELHEMETEKVSEPE 1082
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 38.1 bits (87), Expect = 0.009
Identities = 42/125 (33%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 98 PPSPSQHDH-SPHPPGLQPASSAA--PSVMDLSSRASAPLH-PGIPSPNCMQSPIRPGQL 153
PPSP H SPHPP LQP + +A PS S A PLH G P P+ +Q+ G L
Sbjct: 257 PPSPHPPPHPSPHPP-LQPLTGSAGQPSA---PSHAQPPLHGQGPPGPHSLQA----GPL 308
Query: 154 LPANRNTPSPIDPDTI-------QVPVGYEPDPADLALS-SIPGQEMFDPRKRKFSEEEL 205
L P P P + Q P+G P A S +P + ++ E+ L
Sbjct: 309 L----QHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPL 364
Query: 206 KPQPM 210
P P+
Sbjct: 365 PPAPL 369
Score = 33.5 bits (75), Expect = 0.23
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 99 PSPSQHDHSPHPPGLQPASSAA-----PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQL 153
P+P H H PH G P S A P++ LSS ++ HP P P QL
Sbjct: 386 PAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTH--HPPSAHP-------PPLQL 436
Query: 154 LPANRNTP-SPIDPDTIQVPVGYEPDPA 180
+P ++ P SP P + P PA
Sbjct: 437 MPQSQPLPSSPAQPPGLTQSQNLPPPPA 464
Score = 28.5 bits (62), Expect = 7.4
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 93 SENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAP---LHPGIPSPNCMQSPIR 149
+E S S H+ P L PS + +A + P P+ + R
Sbjct: 648 AERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYAR 707
Query: 150 PGQLLPANRNTP-----SPIDP-DTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEE 203
P + P NRN P +P DP +P Y DP +I +E+ R+R+ E
Sbjct: 708 PHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDP------TIREREL---REREIRER 758
Query: 204 ELKPQPMIKKARKVF 218
E++ + + ++ + F
Sbjct: 759 EIRERELRERMKPGF 773
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 38.1 bits (87), Expect = 0.009
Identities = 42/125 (33%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 98 PPSPSQHDH-SPHPPGLQPASSAA--PSVMDLSSRASAPLH-PGIPSPNCMQSPIRPGQL 153
PPSP H SPHPP LQP + +A PS S A PLH G P P+ +Q+ G L
Sbjct: 811 PPSPHPPPHPSPHPP-LQPLTGSAGQPSA---PSHAQPPLHGQGPPGPHSLQA----GPL 862
Query: 154 LPANRNTPSPIDPDTI-------QVPVGYEPDPADLALS-SIPGQEMFDPRKRKFSEEEL 205
L P P P + Q P+G P A S +P + ++ E+ L
Sbjct: 863 L----QHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPL 918
Query: 206 KPQPM 210
P P+
Sbjct: 919 PPAPL 923
Score = 33.5 bits (75), Expect = 0.23
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 99 PSPSQHDHSPHPPGLQPASSAA-----PSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQL 153
P+P H H PH G P S A P++ LSS ++ HP P P QL
Sbjct: 940 PAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTH--HPPSAHP-------PPLQL 990
Query: 154 LPANRNTP-SPIDPDTIQVPVGYEPDPA 180
+P ++ P SP P + P PA
Sbjct: 991 MPQSQPLPSSPAQPPGLTQSQNLPPPPA 1018
Score = 28.5 bits (62), Expect = 7.4
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 93 SENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAP---LHPGIPSPNCMQSPIR 149
+E S S H+ P L PS + +A + P P+ + R
Sbjct: 1202 AERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYAR 1261
Query: 150 PGQLLPANRNTP-----SPIDP-DTIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEE 203
P + P NRN P +P DP +P Y DP +I +E+ R+R+ E
Sbjct: 1262 PHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDP------TIREREL---REREIRER 1312
Query: 204 ELKPQPMIKKARKVF 218
E++ + + ++ + F
Sbjct: 1313 EIRERELRERMKPGF 1327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,644,867
Number of Sequences: 37866
Number of extensions: 882726
Number of successful extensions: 5095
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 4380
Number of HSP's gapped (non-prelim): 1062
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.