Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GALK2 Sequence: fasta or formatted (458aa) NCBI GI: 4503897
Description:

galactokinase 2 isoform 1

Referenced in:

Galactose and Lactose

Other entries for this name:
alt prot [447aa] galactokinase 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         38           2
 C cysteine            3.5         16           2
 D aspartate           3.3         15           1
 E glutamate           7.6         35           2
 F phenylalanine       3.3         15           1
 G glycine             6.8         31           3
 H histidine           2.0          9           1
 I isoleucine          4.8         22           2
 K lysine              5.9         27           2
 L leucine            12.2         56           2
 M methionine          2.8         13           1
 N asparagine          4.1         19           2
 P proline             5.0         23           2
 Q glutamine           3.9         18           1
 R arginine            4.1         19           2
 S serine              7.6         35           4
 T threonine           4.1         19           1
 V valine              6.8         31           1
 W tryptophan          0.7          3           1
 Y tyrosine            3.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   galactokinase 2 isoform 1 
GALK2                 0.964   galactokinase 2 isoform 2 
GALK1                 0.150   galactokinase 1 
FAM135A               0.013   hypothetical protein LOC57579 isoform c 
FAM135A               0.013   hypothetical protein LOC57579 isoform a 
MVK                   0.013   mevalonate kinase 
MVK                   0.013   mevalonate kinase 
CCDC108               0.013   coiled-coil domain containing 108 isoform 1 
CCDC57                0.009   coiled-coil domain containing 57 
HSPA14                0.006   heat shock 70kDa protein 14 isoform 1 
RTL1                  0.006   retrotransposon-like 1 
MYH14                 0.006   myosin, heavy chain 14 isoform 1 
MYH14                 0.006   myosin, heavy chain 14 isoform 2 
MYH14                 0.006   myosin, heavy chain 14 isoform 3 
MAZ                   0.006   MYC-associated zinc finger protein isoform 2 
MAZ                   0.006   MYC-associated zinc finger protein isoform 1 
PHIP                  0.006   pleckstrin homology domain interacting protein [Homo...
ELF3                  0.006   E74-like factor 3 (ets domain transcription factor,...
ELF3                  0.006   E74-like factor 3 (ets domain transcription factor,...
LOC100133477          0.004   PREDICTED: similar to hCG1640792 
LOC100289143          0.004   PREDICTED: hypothetical protein XP_002343241 
LRRC58                0.004   leucine rich repeat containing 58 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press