Guide to the Human Genome
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Name: ETV6 Sequence: fasta or formatted (452aa) NCBI GI: 4503611
Description:

ets variant 6

Referenced in:

Ets Family
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         15           1
 C cysteine            1.1          5           1
 D aspartate           4.9         22           2
 E glutamate           8.4         38           2
 F phenylalanine       2.4         11           2
 G glycine             2.4         11           1
 H histidine           5.5         25           2
 I isoleucine          5.8         26           2
 K lysine              3.5         16           1
 L leucine             9.5         43           4
 M methionine          3.1         14           1
 N asparagine          5.1         23           2
 P proline            10.2         46           2
 Q glutamine           4.6         21           1
 R arginine            9.3         42           2
 S serine              9.5         43           2
 T threonine           3.3         15           2
 V valine              3.5         16           1
 W tryptophan          1.3          6           1
 Y tyrosine            3.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ets variant 6 
ETV7                  0.185   ets variant 7 
ELK1                  0.070   ELK1 protein 
ELK1                  0.070   ELK1 protein 
ELF1                  0.069   E74-like factor 1 (ets domain transcription factor) ...
ELF1                  0.069   E74-like factor 1 (ets domain transcription factor)...
ELF2                  0.068   E74-like factor 2 (ets domain transcription factor) ...
ELF2                  0.068   E74-like factor 2 (ets domain transcription factor) i...
ELK3                  0.065   ELK3 protein 
ELF4                  0.064   E74-like factor 4 
ELF4                  0.064   E74-like factor 4 
EHF                   0.061   ets homologous factor 
ETS2                  0.061   v-ets erythroblastosis virus E26 oncogene homolog 2 [...
ETV4                  0.060   ets variant gene 4 (E1A enhancer binding protein, E...
ETV4                  0.060   ets variant gene 4 (E1A enhancer binding protein, E1...
ETV1                  0.060   ets variant gene 1 isoform e 
ETV1                  0.060   ets variant gene 1 isoform d 
ETV1                  0.060   ets variant gene 1 isoform c 
ETV1                  0.060   ets variant gene 1 isoform c 
ETV1                  0.060   ets variant gene 1 isoform a 
ETV1                  0.059   ets variant gene 1 isoform f 
ETV1                  0.059   ets variant gene 1 isoform b 
ETS1                  0.059   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS1                  0.059   v-ets erythroblastosis virus E26 oncogene homolog 1 i...
ETS1                  0.059   v-ets erythroblastosis virus E26 oncogene homolog 1...
ERG                   0.058   ets-related isoform 4 
ERG                   0.058   ets-related isoform 2 
ERG                   0.058   ets-related isoform 1 
ERG                   0.058   ets-related isoform 3 
ELK4                  0.058   ELK4 protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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