Guide to the Human Genome
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Name: DHX16 Sequence: fasta or formatted (1041aa) NCBI GI: 4503293
Description:

DEAH (Asp-Glu-Ala-His) box polypeptide 16

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         91           2
 C cysteine            1.2         13           2
 D aspartate           4.3         45           2
 E glutamate          11.7        122           7
 F phenylalanine       3.5         36           2
 G glycine             5.0         52           2
 H histidine           1.9         20           1
 I isoleucine          3.3         34           2
 K lysine              6.1         63           3
 L leucine            10.2        106           3
 M methionine          2.1         22           1
 N asparagine          1.9         20           2
 P proline             4.6         48           3
 Q glutamine           4.6         48           3
 R arginine            9.2         96           2
 S serine              5.9         61           2
 T threonine           5.5         57           2
 V valine              6.3         66           3
 W tryptophan          0.9          9           1
 Y tyrosine            3.1         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
DHX8                  0.363   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
DHX38                 0.326   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
DHX15                 0.306   DEAH (Asp-Glu-Ala-His) box polypeptide 15 
DHX35                 0.280   DEAH (Asp-Glu-Ala-His) box polypeptide 35 
DHX33                 0.257   DEAH (Asp-Glu-Ala-His) box polypeptide 33 
DHX40                 0.223   DEAH (Asp-Glu-Ala-His) box polypeptide 40 
LOC100134387          0.167   PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box po...
DHX34                 0.162   DEAH (Asp-Glu-Ala-His) box polypeptide 34 
DHX32                 0.160   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom...
DQX1                  0.131   DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...
DHX30                 0.126   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.126   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
DHX9                  0.115   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
TDRD9                 0.105   tudor domain containing 9 
DHX37                 0.092   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
DHX57                 0.084   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
DHX36                 0.083   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
DHX36                 0.076   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX29                 0.070   DEAH (Asp-Glu-Ala-His) box polypeptide 29 
YTHDC2                0.066   YTH domain containing 2 
LOC100286959          0.029   PREDICTED: hypothetical protein XP_002343921 
LOC100133599          0.028   PREDICTED: hypothetical protein 
RBM25                 0.027   RNA binding motif protein 25 
TCHH                  0.027   trichohyalin 
LOC283685             0.025   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.023   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.023   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.023   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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