Search of human proteins with 4503109

Search of human proteins with 4503109

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503109 cystatin S precursor [Homo sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503109 cystatin S precursor [Homo sapiens]                        291   2e-79
gi|19882251 cystatin SN precursor [Homo sapiens]                      253   5e-68
gi|4503105 cystatin SA precursor [Homo sapiens]                       251   2e-67
gi|19882256 cystatin D precursor [Homo sapiens]                       164   2e-41
gi|4503107 cystatin C precursor [Homo sapiens]                        158   2e-39
gi|4885163 cystatin 8 precursor [Homo sapiens]                         75   1e-14
gi|4503113 cystatin M precursor [Homo sapiens]                         70   4e-13
gi|20302139 cystatin F [Homo sapiens]                                  69   1e-12
gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens]             65   2e-11
gi|19882259 cystatin-like 1 precursor [Homo sapiens]                   62   1e-10
gi|18104940 cystatin 9-like precursor [Homo sapiens]                   57   4e-09
gi|4504893 kininogen 1 isoform 2 [Homo sapiens]                        46   1e-05
gi|156231037 kininogen 1 isoform 1 [Homo sapiens]                      46   1e-05
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]           42   1e-04
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ...    40   6e-04
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ...    40   6e-04
gi|226529477 cystatin 9 precursor [Homo sapiens]                       39   0.002
gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens]             37   0.007
gi|58331240 fetuin B [Homo sapiens]                                    32   0.13 
gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]            29   1.5  
gi|55742730 storkhead box 2 [Homo sapiens]                             26   9.5  

>gi|4503109 cystatin S precursor [Homo sapiens]
          Length = 141

 Score =  291 bits (744), Expect = 2e-79
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60
           MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE
Sbjct: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60

Query: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120
           DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF
Sbjct: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120

Query: 121 EIYEVPWEDRMSLVNSRCQEA 141
           EIYEVPWEDRMSLVNSRCQEA
Sbjct: 121 EIYEVPWEDRMSLVNSRCQEA 141


>gi|19882251 cystatin SN precursor [Homo sapiens]
          Length = 141

 Score =  253 bits (645), Expect = 5e-68
 Identities = 123/141 (87%), Positives = 133/141 (94%)

Query: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60
           MA+ L TLLLL+ATLA ALA S KEE+RIIPGGIY+ADLNDEWVQRALHFAISEYNKAT+
Sbjct: 1   MAQYLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKATK 60

Query: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120
           D+YYRRPL+VLRAR+QT GGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF
Sbjct: 61  DDYYRRPLRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120

Query: 121 EIYEVPWEDRMSLVNSRCQEA 141
           EIYEVPWE+R SLV SRCQE+
Sbjct: 121 EIYEVPWENRRSLVKSRCQES 141


>gi|4503105 cystatin SA precursor [Homo sapiens]
          Length = 141

 Score =  251 bits (640), Expect = 2e-67
 Identities = 124/141 (87%), Positives = 130/141 (92%)

Query: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60
           MA PLCTLLLL+AT A ALA S +EE+RII GGIYDADLNDE VQRALHF ISEYNKATE
Sbjct: 1   MAWPLCTLLLLLATQAVALAWSPQEEDRIIEGGIYDADLNDERVQRALHFVISEYNKATE 60

Query: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120
           DEYYRR L+VLRAREQ  GGVNYFFD+EVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF
Sbjct: 61  DEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120

Query: 121 EIYEVPWEDRMSLVNSRCQEA 141
           +IYEVPWEDRMSLVNSRCQEA
Sbjct: 121 QIYEVPWEDRMSLVNSRCQEA 141


>gi|19882256 cystatin D precursor [Homo sapiens]
          Length = 142

 Score =  164 bits (416), Expect = 2e-41
 Identities = 78/141 (55%), Positives = 108/141 (76%), Gaps = 1/141 (0%)

Query: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKA-T 59
           M  P+ T LLL+  L  A+A S+  ++R + GGI+  DLND+ VQ AL FAISEYNK   
Sbjct: 1   MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVIN 60

Query: 60  EDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCS 119
           +DEYY RPLQV+ A +Q  GGVNY+F+V+ GRT CTKSQPNLD C F++QP+L++++ CS
Sbjct: 61  KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCS 120

Query: 120 FEIYEVPWEDRMSLVNSRCQE 140
           F+I EVPWED++S++N +C++
Sbjct: 121 FQINEVPWEDKISILNYKCRK 141


>gi|4503107 cystatin C precursor [Homo sapiens]
          Length = 146

 Score =  158 bits (399), Expect = 2e-39
 Identities = 82/147 (55%), Positives = 103/147 (70%), Gaps = 7/147 (4%)

Query: 1   MARPLCTLLLLMATLAGALA------SSSKEENRIIPGGIYDADLNDEWVQRALHFAISE 54
           MA PL   LLL+A LA ALA      SS  +  R++ GG  DA + +E V+RAL FA+ E
Sbjct: 1   MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLV-GGPMDASVEEEGVRRALDFAVGE 59

Query: 55  YNKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQK 114
           YNKA+ D Y+ R LQV+RAR+Q   GVNYF DVE+GRT CTK+QPNLD C FH+QP L++
Sbjct: 60  YNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKR 119

Query: 115 KQLCSFEIYEVPWEDRMSLVNSRCQEA 141
           K  CSF+IY VPW+  M+L  S CQ+A
Sbjct: 120 KAFCSFQIYAVPWQGTMTLSKSTCQDA 146


>gi|4885163 cystatin 8 precursor [Homo sapiens]
          Length = 142

 Score = 75.5 bits (184), Expect = 1e-14
 Identities = 39/135 (28%), Positives = 71/135 (52%)

Query: 7   TLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRR 66
           +L+LL   LA       K+    +   +   + ++  V++ L FA+ EYNK +ED+Y   
Sbjct: 8   SLILLTIPLALVARKDPKKNETGVLRKLKPVNASNANVKQCLWFAMQEYNKESEDKYVFL 67

Query: 67  PLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVP 126
            ++ L+A+ Q    + Y  DVE+ R+ C K     + CA  E  +L++K  CSF +  +P
Sbjct: 68  VVKTLQAQLQVTNLLEYLIDVEIARSDCRKPLSTNEICAIQENSKLKRKLSCSFLVGALP 127

Query: 127 WEDRMSLVNSRCQEA 141
           W    +++  +C++A
Sbjct: 128 WNGEFTVMEKKCEDA 142


>gi|4503113 cystatin M precursor [Homo sapiens]
          Length = 149

 Score = 70.5 bits (171), Expect = 4e-13
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 12/148 (8%)

Query: 1   MARPLCTLLLLMATLAGALASSSKE-----ENRIIPGGIYDADLNDEWVQRALHFAISEY 55
           MAR    L L +A +A  L +  ++     + R++ G + D   +D  VQ+A   A++ Y
Sbjct: 1   MARSNLPLALGLALVAFCLLALPRDARARPQERMV-GELRDLSPDDPQVQKAAQAAVASY 59

Query: 56  NKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQ-----PNLDTCAFHEQP 110
           N  +   YY R   +++A+ Q   G+ YF  +E+G T C K++      +L TC      
Sbjct: 60  NMGSNSIYYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTRVTGDHVDLTTCPLAAGA 119

Query: 111 ELQKKQLCSFEIYEVPWEDRMSLVNSRC 138
           + Q+K  C FE+  VPW++   L+   C
Sbjct: 120 Q-QEKLRCDFEVLVVPWQNSSQLLKHNC 146


>gi|20302139 cystatin F [Homo sapiens]
          Length = 167

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 10  LLMATLAGALASSSKEE--NRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRP 67
           L+++T  G    +  ++  +R+ PG       ND  V +A  +++ ++N  T D +  + 
Sbjct: 35  LVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKE 94

Query: 68  LQVLRAREQTFGGVNYFFDVEVGRTICTKSQP-NLDTCAFHEQPELQKKQLCSFEIYEVP 126
            ++ RA  Q   G+ Y  +VE+GRT C K+Q   LD C F     L++   C  E++ VP
Sbjct: 95  SRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVP 154

Query: 127 WEDRMSLVNSRC 138
           W     +   RC
Sbjct: 155 WLQHFEVPVLRC 166


>gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens]
          Length = 138

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 1   MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60
           MA P   L LL+A L   +A   +   +     +++    + + + +L +   +YNK ++
Sbjct: 2   MAEPWQALQLLLAILLTLMALPYQARKKTFLS-VHEVMAVENYAKDSLQWITDQYNKESD 60

Query: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSF 120
           D+Y+ R  +VL+ + Q    + Y  +VE+  T C K  P    C   E+ EL K+  C F
Sbjct: 61  DKYHFRIFRVLKVQRQVTDHLEYHLNVEMQWTTCQK--PETTNCVPQER-ELHKQVNCFF 117

Query: 121 EIYEVPWEDRMSLVNSRC 138
            ++ VPW ++  ++N  C
Sbjct: 118 SVFAVPWFEQYKILNKSC 135


>gi|19882259 cystatin-like 1 precursor [Homo sapiens]
          Length = 145

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 8   LLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRP 67
           LLL+   L+  L    + E      G     ++ + +   L+F I  YN A+ D Y  R 
Sbjct: 11  LLLIALVLSAKLGHFQRWE------GFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRV 64

Query: 68  LQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPW 127
            +++R++ Q   GV Y   V++G T C ++  +  +C   +  +L+K  +C   IY +PW
Sbjct: 65  QRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPL-QSKKLRKSLICESLIYTMPW 123

Query: 128 EDRMSLVNSRCQEA 141
            +   L N+ C EA
Sbjct: 124 INYFQLWNNSCLEA 137


>gi|18104940 cystatin 9-like precursor [Homo sapiens]
          Length = 147

 Score = 57.4 bits (137), Expect = 4e-09
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 43  WVQRALHFAISEYNKATEDEYYRRPLQVLRA-REQTFGGVNYFFDVEVGRTICTKSQPNL 101
           ++   + FA+  +N+ ++D Y  R   +L + +EQ      +  ++ +GRT C K + ++
Sbjct: 46  YLPATVEFAVHTFNQQSKDYYAYRLGHILNSWKEQVESKTVFSMELLLGRTRCGKFEDDI 105

Query: 102 DTCAFHEQPELQKKQLCSFEIYEVPWEDRMSLVNSRCQE 140
           D C F E  EL     C F I   PW  + SL+N  C E
Sbjct: 106 DNCHFQESTELNNTFTCFFTISTRPWMTQFSLLNKTCLE 144


>gi|4504893 kininogen 1 isoform 2 [Homo sapiens]
          Length = 427

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 28  RIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRPLQVLRAREQTFGGVNYFFDV 87
           +I  G   D   N   ++  L   I++ N      +Y +   V +AR Q   G  YF D 
Sbjct: 262 KICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFIDF 321

Query: 88  EVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPWEDRM 131
               T C+K + N +     E  +L +   C+ E+Y VPWE ++
Sbjct: 322 VARETTCSK-ESNEELTESCETKKLGQSLDCNAEVYVVPWEKKI 364


>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
          Length = 644

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 28  RIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRPLQVLRAREQTFGGVNYFFDV 87
           +I  G   D   N   ++  L   I++ N      +Y +   V +AR Q   G  YF D 
Sbjct: 262 KICVGCPRDIPTNSPELEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFIDF 321

Query: 88  EVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPWEDRM 131
               T C+K + N +     E  +L +   C+ E+Y VPWE ++
Sbjct: 322 VARETTCSK-ESNEELTESCETKKLGQSLDCNAEVYVVPWEKKI 364


>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
          Length = 538

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 18/87 (20%)

Query: 47  ALHFAISEYNKATEDEYYRRPLQVLRAREQTFG------------------GVNYFFDVE 88
           ++ FA++++N+   +EY  R L+V RA+++  G                  GV    D+E
Sbjct: 396 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSGSHFVHSQNSLHRLNSSKPGVMAAGDLE 455

Query: 89  VGRTICTKSQPNLDTCAFHEQPELQKK 115
           +G TIC K   ++D C   E    +KK
Sbjct: 456 MGLTICKKYDEDIDNCPLQEGSAEKKK 482


>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
           sapiens]
          Length = 537

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 18/87 (20%)

Query: 47  ALHFAISEYNKATEDEYYRRPLQVLRAREQTFGG------------------VNYFFDVE 88
           ++ FA++++N+   +EY  R L+V RA+++  G                   V    D+E
Sbjct: 395 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSGSHFVHSQNSLHRLNSSKPVVMAAGDLE 454

Query: 89  VGRTICTKSQPNLDTCAFHEQPELQKK 115
           +G TIC K   ++D C   E    +KK
Sbjct: 455 MGLTICKKYDEDIDNCPLQEGSAEKKK 481


>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
           sapiens]
          Length = 537

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 18/87 (20%)

Query: 47  ALHFAISEYNKATEDEYYRRPLQVLRAREQTFGG------------------VNYFFDVE 88
           ++ FA++++N+   +EY  R L+V RA+++  G                   V    D+E
Sbjct: 395 SMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSGSHFVHSQNSLHRLNSSKPVVMAAGDLE 454

Query: 89  VGRTICTKSQPNLDTCAFHEQPELQKK 115
           +G TIC K   ++D C   E    +KK
Sbjct: 455 MGLTICKKYDEDIDNCPLQEGSAEKKK 481


>gi|226529477 cystatin 9 precursor [Homo sapiens]
          Length = 159

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 11/112 (9%)

Query: 7   TLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRR 66
           +LLL+   L    A  S+EE      G  +  + D      + FA++ +N  +++E+  R
Sbjct: 15  SLLLMGFQLLVTYAWCSEEEM-----GGNNKIVQDPMFLATVEFALNTFNVQSKEEHAYR 69

Query: 67  PLQVLRA-REQTF-----GGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPEL 112
            L+VL + RE +      G + +  ++++ +T+C K + ++D C F E  EL
Sbjct: 70  LLRVLSSWREDSMDRKWRGKMVFSMNLQLRQTVCRKFEDDIDNCPFQESLEL 121


>gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens]
          Length = 103

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 1  MARPLCTLLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATE 60
          MA P   L LL+A L   +A   +   +     +++    + + + +L +   +YNK ++
Sbjct: 2  MAEPWQALQLLLAILLTLMALPYQARKKTFLS-VHEVMAVENYAKDSLQWITDQYNKESD 60

Query: 61 DEYYRRPLQVLRAREQTFGGVNYFFDV 87
          D+Y+ R  +VL+ + Q    VN FF V
Sbjct: 61 DKYHFRIFRVLKVQRQQ---VNCFFSV 84


>gi|58331240 fetuin B [Homo sapiens]
          Length = 382

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 38  DLNDEWVQRALHFAISEYNKATEDEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKS 97
           D ++  V  A   ++++YN     + Y    +V RA  Q   G +YF +  +  + CTKS
Sbjct: 161 DSSNHQVLEAATESLAKYNNENTSKQYSL-FKVTRASSQWVVGPSYFVEYLIKESPCTKS 219

Query: 98  QPNLDTCAFHEQPELQKKQLCSFEIYEVPWEDRMSL 133
           Q +  +C+      +    LC   +    WE  +S+
Sbjct: 220 QAS--SCSLQSSDSV-PVGLCKGSLTRTHWEKFVSV 252



 Score = 30.0 bits (66), Expect = 0.66
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 8  LLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRP 67
          L L +  L     + S  +  + P  +     ND  V     FA+ + NK  +D Y  R 
Sbjct: 5  LPLALCILVLCCGAMSPPQLALNPSALLSRGCNDSDVLAVAGFALRDINKDRKDGYVLRL 64

Query: 68 LQVLRAREQTFGGVN--YFFDVEVGRTIC 94
           +V  A+E   GG+   ++  ++V  T C
Sbjct: 65 NRVNDAQEYRRGGLGSLFYLTLDVLETDC 93


>gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]
          Length = 1191

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 19  LASSSKEENRIIPGGIYDADLNDEWV 44
           +AS  K+  R IPG I+ +DL D WV
Sbjct: 430 IASVLKDFLRNIPGSIFSSDLYDHWV 455


>gi|55742730 storkhead box 2 [Homo sapiens]
          Length = 926

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 14/75 (18%)

Query: 61  DEYYRRPLQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKK----- 115
           + Y++  L +L++  +T        D   GR  C K +P+L T A    P  Q++     
Sbjct: 714 NSYHKSSLSLLKSHPKTPA------DTLPGR--CEKLEPSLGTSAAQAMPASQRQQESGG 765

Query: 116 -QLCSFEIYEVPWED 129
            Q  SF+ Y V  +D
Sbjct: 766 NQEASFDYYNVSDDD 780


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,356,262
Number of Sequences: 37866
Number of extensions: 211703
Number of successful extensions: 405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 27
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.