Search of human proteins with 41393556

Search of human proteins with 41393556

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41393556 mannosidase, endo-alpha [Homo sapiens]
         (462 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41393556 mannosidase, endo-alpha [Homo sapiens]                    968   0.0  
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]    557   e-159
gi|22749033 mannosidase, endo-alpha-like isoform 2 [Homo sapiens]     331   1e-90
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]     233   3e-61
gi|157388945 elongation of very long chain fatty acids-like 2 [H...    30   3.5  
gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens]    29   7.9  

>gi|41393556 mannosidase, endo-alpha [Homo sapiens]
          Length = 462

 Score =  968 bits (2503), Expect = 0.0
 Identities = 462/462 (100%), Positives = 462/462 (100%)

Query: 1   MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD 60
           MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD
Sbjct: 1   MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD 60

Query: 61  FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY 120
           FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY
Sbjct: 61  FQKSDRINSETNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKY 120

Query: 121 IHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS 180
           IHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS
Sbjct: 121 IHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSAS 180

Query: 181 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY 240
           IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY
Sbjct: 181 IGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKNVKY 240

Query: 241 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI 300
           IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI
Sbjct: 241 IIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFI 300

Query: 301 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY 360
           ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY
Sbjct: 301 ALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGY 360

Query: 361 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS 420
           IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
Sbjct: 361 IDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS 420

Query: 421 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS 462
           NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS
Sbjct: 421 NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS 462


>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
          Length = 457

 Score =  557 bits (1436), Expect = e-159
 Identities = 261/458 (56%), Positives = 333/458 (72%), Gaps = 4/458 (0%)

Query: 1   MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD 60
           MA+ RRR CI L L +LF F  +MGL+ L+          GL+L P   +R         
Sbjct: 1   MARRRRRACIALFLVLLFAFGTLMGLRTLKAPDGLPALGPGLELAP-FERRPEGAPAPAA 59

Query: 61  FQKSDRINSETNTKNLKSVEITMKPSKA-SELNLDELPPLNNY--LHVFYYSWYGNPQFD 117
              +            ++ +    P  A +E     +  L  Y  LH FYYSWYG+P+ +
Sbjct: 60  RAPAAPAAPPPPPPPPRTADPGGSPGPAPAEAEPAPVQSLRVYSDLHAFYYSWYGSPRRE 119

Query: 118 GKYIHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMR 177
           G YIHW+H ++ HWDP+I+ +YP+GRH+PPDD+GSSFYPELG YSSRDP V+  HM Q++
Sbjct: 120 GHYIHWDHVMVPHWDPKISASYPRGRHSPPDDLGSSFYPELGPYSSRDPEVLREHMTQLK 179

Query: 178 SASIGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKN 237
            A+IGVL LSWYPP + D+NGEP+D+LVP ILD AH+Y+++V FHI+PY  RDD  ++ N
Sbjct: 180 EAAIGVLVLSWYPPGMADDNGEPSDDLVPAILDTAHQYSIQVAFHIQPYKGRDDITVHDN 239

Query: 238 VKYIIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDG 297
           +KYIID YG+H AFYRYK   G +LP+FY+YDSY+T PE WA+LLT +G  SIRN+PYDG
Sbjct: 240 IKYIIDTYGSHGAFYRYKNSMGKSLPLFYIYDSYLTSPEAWAHLLTPNGPHSIRNTPYDG 299

Query: 298 LFIALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVG 357
           +FIALLVEE H +DIL +GFDG+YTYFA+NGF++GSSHQNW ++K FCD  NL+FIPSVG
Sbjct: 300 VFIALLVEEGHTHDILAAGFDGMYTYFASNGFSFGSSHQNWKAVKNFCDANNLMFIPSVG 359

Query: 358 PGYIDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPK 417
           PGYIDTSIRPWN  NTRNR+NGKYYE  L AAL  RP ++SITSFNEWHEGTQIEKA+PK
Sbjct: 360 PGYIDTSIRPWNNHNTRNRVNGKYYETALQAALTVRPEIVSITSFNEWHEGTQIEKAIPK 419

Query: 418 RTSNTVYLDYRPHKPGLYLELTRKWSEKYSKERATYAL 455
           +T   +YLDY PH+P LYLELTR+W+E + KE+  + +
Sbjct: 420 KTPTRLYLDYLPHQPSLYLELTRRWAEHFIKEKEQWLM 457


>gi|22749033 mannosidase, endo-alpha-like isoform 2 [Homo sapiens]
          Length = 235

 Score =  331 bits (848), Expect = 1e-90
 Identities = 145/212 (68%), Positives = 177/212 (83%)

Query: 244 KYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWANLLTTSGSRSIRNSPYDGLFIALL 303
           +YG+H AFYRYK   G +LP+FY+YDSY+T PE WA+LLT +G  SIRN+PYDG+FIALL
Sbjct: 24  RYGSHGAFYRYKNSMGKSLPLFYIYDSYLTSPEAWAHLLTPNGPHSIRNTPYDGVFIALL 83

Query: 304 VEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNLIFIPSVGPGYIDT 363
           VEE H +DIL +GFDG+YTYFA+NGF++GSSHQNW ++K FCD  NL+FIPSVGPGYIDT
Sbjct: 84  VEEGHTHDILAAGFDGMYTYFASNGFSFGSSHQNWKAVKNFCDANNLMFIPSVGPGYIDT 143

Query: 364 SIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTSNTV 423
           SIRPWN  NTRNR+NGKYYE  L AAL  RP ++SITSFNEWHEGTQIEKA+PK+T   +
Sbjct: 144 SIRPWNNHNTRNRVNGKYYETALQAALTVRPEIVSITSFNEWHEGTQIEKAIPKKTPTRL 203

Query: 424 YLDYRPHKPGLYLELTRKWSEKYSKERATYAL 455
           YLDY PH+P LYLELTR+W+E + KE+  + +
Sbjct: 204 YLDYLPHQPSLYLELTRRWAEHFIKEKEQWLM 235


>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
          Length = 250

 Score =  233 bits (594), Expect = 3e-61
 Identities = 117/249 (46%), Positives = 158/249 (63%), Gaps = 4/249 (1%)

Query: 1   MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFD 60
           MA+ RRR CI L L +LF F  +MGL+ L+          GL+L P   +R         
Sbjct: 1   MARRRRRACIALFLVLLFAFGTLMGLRTLKAPDGLPALGPGLELAP-FERRPEGAPAPAA 59

Query: 61  FQKSDRINSETNTKNLKSVEITMKPSKA-SELNLDELPPLNNY--LHVFYYSWYGNPQFD 117
              +            ++ +    P  A +E     +  L  Y  LH FYYSWYG+P+ +
Sbjct: 60  RAPAAPAAPPPPPPPPRTADPGGSPGPAPAEAEPAPVQSLRVYSDLHAFYYSWYGSPRRE 119

Query: 118 GKYIHWNHPVLEHWDPRIAKNYPQGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMR 177
           G YIHW+H ++ HWDP+I+ +YP+GRH+PPDD+GSSFYPELG YSSRDP V+  HM Q++
Sbjct: 120 GHYIHWDHVMVPHWDPKISASYPRGRHSPPDDLGSSFYPELGPYSSRDPEVLREHMTQLK 179

Query: 178 SASIGVLALSWYPPDVNDENGEPTDNLVPTILDKAHKYNLKVTFHIEPYSNRDDQNMYKN 237
            A+IGVL LSWYPP + D+NGEP+D+LVP ILD AH+Y+++V FHI+PY  RDD  ++ N
Sbjct: 180 EAAIGVLVLSWYPPGMADDNGEPSDDLVPAILDTAHQYSIQVAFHIQPYKGRDDITVHDN 239

Query: 238 VKYIIDKYG 246
           +KYIID  G
Sbjct: 240 IKYIIDTTG 248


>gi|157388945 elongation of very long chain fatty acids-like 2 [Homo
           sapiens]
          Length = 296

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 97  PPLNNYLHVFYYSWYGNPQFDG--KYIHW 123
           P LN+++H+  YS+YG   F    KY+ W
Sbjct: 173 PTLNSFIHILMYSYYGLSVFPSMHKYLWW 201


>gi|157384977 glutamate receptor, ionotropic, delta 2 [Homo sapiens]
          Length = 1007

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 78  SVEITMKPSKASELNLDELPPLNNYLHVFYYSW------YGNPQFDGKYIHWN 124
           S  +  KP K    ++D L  L+NYL   Y  +      YG+PQ DG    WN
Sbjct: 457 SENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGT---WN 506


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,960,180
Number of Sequences: 37866
Number of extensions: 897261
Number of successful extensions: 1681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 8
length of query: 462
length of database: 18,247,518
effective HSP length: 106
effective length of query: 356
effective length of database: 14,233,722
effective search space: 5067205032
effective search space used: 5067205032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.