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Search of human proteins with 40538806
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40538806 hypothetical protein LOC55096 [Homo sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40538806 hypothetical protein LOC55096 [Homo sapiens] 550 e-157
gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo sap... 318 3e-87
gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo sapi... 311 3e-85
gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo sapi... 308 3e-84
gi|145275208 myosin IIIA [Homo sapiens] 30 1.7
gi|193788653 hypothetical protein LOC100131897 [Homo sapiens] 29 5.0
gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo ... 28 6.5
gi|4506007 protein phosphatase 1, catalytic subunit, gamma isofo... 28 6.5
gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens] 28 6.5
gi|116235456 ring finger protein 214 [Homo sapiens] 28 6.5
gi|116235451 ring finger protein 214 [Homo sapiens] 28 6.5
gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens] 28 8.5
gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens] 28 8.5
gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens] 28 8.5
>gi|40538806 hypothetical protein LOC55096 [Homo sapiens]
Length = 272
Score = 550 bits (1418), Expect = e-157
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MGYFLKLYAYVNSHSLFVWVCDRSYKRSFRPMILNKIKELSRNQFSTMSHLRKDSQPSSP 60
MGYFLKLYAYVNSHSLFVWVCDRSYKRSFRPMILNKIKELSRNQFSTMSHLRKDSQPSSP
Sbjct: 1 MGYFLKLYAYVNSHSLFVWVCDRSYKRSFRPMILNKIKELSRNQFSTMSHLRKDSQPSSP 60
Query: 61 GDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAAKSMLDPAHKSHFH 120
GDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAAKSMLDPAHKSHFH
Sbjct: 61 GDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAAKSMLDPAHKSHFH 120
Query: 121 PVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASRFKDMPNFIALEKS 180
PVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASRFKDMPNFIALEKS
Sbjct: 121 PVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASRFKDMPNFIALEKS 180
Query: 181 SVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAESAI 240
SVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAESAI
Sbjct: 181 SVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAESAI 240
Query: 241 GWISSRPWVGELMFTLLFGDFESPLHKLRKSS 272
GWISSRPWVGELMFTLLFGDFESPLHKLRKSS
Sbjct: 241 GWISSRPWVGELMFTLLFGDFESPLHKLRKSS 272
>gi|169194605 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 367
Score = 318 bits (815), Expect = 3e-87
Identities = 163/222 (73%), Positives = 181/222 (81%), Gaps = 1/222 (0%)
Query: 48 MSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAA 107
MS R + Q SSP D D S QGRFELSGK+RQYP DALEPQP IGD+KDI+KA
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKDIEKAT 60
Query: 108 KSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASR 167
KSMLDPA +SHF+ VTPSLVFLCFIFDGLH+ALLSVGVSKRSN V+GNEN+E GT YAS+
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 168 FKD-MPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGE 226
F+D +P F ALE SS+LRHCCDLLIGIAA SSD ICT+SLQVQR+FKAMM SIGR H E
Sbjct: 121 FEDVLPTFTALEMSSILRHCCDLLIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 180
Query: 227 SADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL 268
SADLLIS NA AI WI+SRPWVG LMFT LFG+FESP +L
Sbjct: 181 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACEL 222
>gi|89030854 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 366
Score = 311 bits (798), Expect = 3e-85
Identities = 162/222 (72%), Positives = 180/222 (81%), Gaps = 2/222 (0%)
Query: 48 MSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAA 107
MS R + Q SSP D D S QGRFELSGK+RQYP DALEPQP IGD+K I+KA
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
Query: 108 KSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASR 167
KSMLDPA +SHF+ VTPSLVFLCFIFDGLH+ALLSVGVSKRSN V+GNEN+E GT YAS+
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 168 FKD-MPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGE 226
F+D +P F ALE SS+LRHCCD LIGIAAGSSD ICT+SLQVQR+FKAMM SIGR H E
Sbjct: 121 FEDVLPTFTALEMSSILRHCCD-LIGIAAGSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179
Query: 227 SADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL 268
SADLLIS NA AI WI+SRPWVG LMFT LFG+FESP +L
Sbjct: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACEL 221
>gi|89031814 PREDICTED: hypothetical protein LOC340900 [Homo
sapiens]
Length = 366
Score = 308 bits (790), Expect = 3e-84
Identities = 161/222 (72%), Positives = 179/222 (80%), Gaps = 2/222 (0%)
Query: 48 MSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSIGDIKDIKKAA 107
MS R + Q SSP D D S QGRFELSGK+RQYP DALEPQP IGD+K I+KA
Sbjct: 1 MSRPRNNPQTSSPQDSTKDGSSFHYFQGRFELSGKSRQYPADALEPQPGIGDVKVIEKAT 60
Query: 108 KSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASR 167
KSMLDPA +SHF+ VTPSLVFLCFIFDGLH+ALLSVGVSKRSN V+GNEN+E GT YAS+
Sbjct: 61 KSMLDPAQRSHFYLVTPSLVFLCFIFDGLHKALLSVGVSKRSNIVIGNENKETGTLYASK 120
Query: 168 FKD-MPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGE 226
F+D +P F ALE SS+LRHCCD LIGIAA SSD ICT+SLQVQR+FKAMM SIGR H E
Sbjct: 121 FEDVLPTFTALEMSSILRHCCD-LIGIAARSSDPICTNSLQVQRQFKAMMISIGRPLHSE 179
Query: 227 SADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL 268
SADLLIS NA AI WI+SRPWVG LMFT LFG+FESP +L
Sbjct: 180 SADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPACEL 221
>gi|145275208 myosin IIIA [Homo sapiens]
Length = 1616
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 96 SIGDIKDIKKAAKSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGN 155
++G+I+ A + +D +H S+ + LC D L +AL S V R T++
Sbjct: 606 NVGNIEFSSVATEHQIDKSHISNHTALENCASLLCIRADELQEALTSHCVVTRGETIIRP 665
Query: 156 ENEERGT 162
E+ T
Sbjct: 666 NTVEKAT 672
>gi|193788653 hypothetical protein LOC100131897 [Homo sapiens]
Length = 535
Score = 28.9 bits (63), Expect = 5.0
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 103 IKKAAKSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGT 162
+ + ++ P+ SH P P C HQ L+S+ + S + G + +
Sbjct: 302 VPSSPRTHSSPSQGSHSQPAHPGRASDCPSSSNNHQNLVSLKTNSASKSAPGCQEQTANN 361
Query: 163 PYASRFKDMPN 173
P S + PN
Sbjct: 362 PTESDTLEFPN 372
>gi|239750064 PREDICTED: hypothetical protein XP_002347285 [Homo
sapiens]
Length = 1140
Score = 28.5 bits (62), Expect = 6.5
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 179 KSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAES 238
+ SVL + +IG+ S+ L +Q R ++ S+G++ H E
Sbjct: 1025 QGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEP 1084
Query: 239 AIGWIS----------SRPWVGELMFTLLFGD 260
A G+I SRP + E++ L + D
Sbjct: 1085 ATGFIDGDLIESFLDISRPKMQEVVANLQYDD 1116
>gi|4506007 protein phosphatase 1, catalytic subunit, gamma isoform
[Homo sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 6.5
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 134 DGLHQALLSVGVSKRSNTVVGNENEERGTPYASRFKDMPNFIALEKSSVLRHCCDL 189
D + Q LL V SK V ENE RG SR + I LE + L+ C D+
Sbjct: 10 DSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDI 65
>gi|148529014 damage-specific DNA binding protein 1 [Homo sapiens]
Length = 1140
Score = 28.5 bits (62), Expect = 6.5
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 179 KSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAES 238
+ SVL + +IG+ S+ L +Q R ++ S+G++ H E
Sbjct: 1025 QGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEP 1084
Query: 239 AIGWIS----------SRPWVGELMFTLLFGD 260
A G+I SRP + E++ L + D
Sbjct: 1085 ATGFIDGDLIESFLDISRPKMQEVVANLQYDD 1116
>gi|116235456 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 28.5 bits (62), Expect = 6.5
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 38 KELSRNQFSTMSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSI 97
KE +RN HL Q +PG A D S + + G+N L S
Sbjct: 59 KENNRNV-----HLEHSEQ--NPGSSAGDTSAAHQV-----VLGENLIATALCLSGSGSQ 106
Query: 98 GDIKDIKKAAKSMLDPAHKSHFHPVTPSLVFLC 130
D+KD+ A D + + HPVT SL C
Sbjct: 107 SDLKDVASTAGEEGDTSLRESLHPVTRSLKAGC 139
>gi|116235451 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 28.5 bits (62), Expect = 6.5
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 38 KELSRNQFSTMSHLRKDSQPSSPGDDAMDRSGLPDLQGRFELSGKNRQYPLDALEPQPSI 97
KE +RN HL Q +PG A D S + + G+N L S
Sbjct: 59 KENNRNV-----HLEHSEQ--NPGSSAGDTSAAHQV-----VLGENLIATALCLSGSGSQ 106
Query: 98 GDIKDIKKAAKSMLDPAHKSHFHPVTPSLVFLC 130
D+KD+ A D + + HPVT SL C
Sbjct: 107 SDLKDVASTAGEEGDTSLRESLHPVTRSLKAGC 139
>gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]
Length = 1044
Score = 28.1 bits (61), Expect = 8.5
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 199 DKICTSSLQ-VQRRFKAMMASIGRLSHGESADLLISCNAESAIGWISSRPWVG-ELMFTL 256
DKIC S+LQ V+ RF R+S E L + + +A+ +S +P +G ELM T
Sbjct: 547 DKICQSNLQLVRARF------CTRVSDTEFQPLPMDVDGTTALFALSGQPVIGLELMVTN 600
Query: 257 LFGDFESP 264
L D P
Sbjct: 601 LPSDPAQP 608
>gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]
Length = 1141
Score = 28.1 bits (61), Expect = 8.5
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 199 DKICTSSLQ-VQRRFKAMMASIGRLSHGESADLLISCNAESAIGWISSRPWVG-ELMFTL 256
DKIC S+LQ V+ RF R+S E L + + +A+ +S +P +G ELM T
Sbjct: 644 DKICQSNLQLVRARF------CTRVSDTEFQPLPMDVDGTTALFALSGQPVIGLELMVTN 697
Query: 257 LFGDFESP 264
L D P
Sbjct: 698 LPSDPAQP 705
>gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens]
Length = 1137
Score = 28.1 bits (61), Expect = 8.5
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 199 DKICTSSLQ-VQRRFKAMMASIGRLSHGESADLLISCNAESAIGWISSRPWVG-ELMFTL 256
DKIC S+LQ V+ RF R+S E L + + +A+ +S +P +G ELM T
Sbjct: 640 DKICQSNLQLVRARF------CTRVSDTEFQPLPMDVDGTTALFALSGQPVIGLELMVTN 693
Query: 257 LFGDFESP 264
L D P
Sbjct: 694 LPSDPAQP 701
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,062,183
Number of Sequences: 37866
Number of extensions: 434052
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 14
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.