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Search of human proteins with 40316944
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
(500 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo sap... 1025 0.0
gi|22748717 adenylosuccinate synthase like 1 isoform 2 [Homo sap... 803 0.0
gi|34577063 adenylosuccinate synthase [Homo sapiens] 652 0.0
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 37 0.032
gi|42491362 IKK interacting protein isoform 2 [Homo sapiens] 37 0.055
gi|239753956 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 35 0.16
gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo ... 34 0.35
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo ... 33 0.60
gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo... 33 0.60
gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo ... 32 1.0
gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo ... 32 1.0
gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo ... 32 1.0
gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo ... 32 1.0
gi|157266326 oculocutaneous albinism II [Homo sapiens] 32 1.8
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 31 2.3
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 31 2.3
gi|38454194 tubulin, gamma complex associated protein 4 [Homo sa... 31 3.0
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 30 3.9
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 30 3.9
gi|239743200 PREDICTED: hypothetical protein XP_002342802 [Homo ... 30 3.9
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 30 3.9
gi|239508875 PREDICTED: similar to Putative uncharacterized prot... 30 3.9
gi|225690502 junctophilin 4 [Homo sapiens] 30 3.9
gi|225690500 junctophilin 4 [Homo sapiens] 30 3.9
>gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
Length = 500
Score = 1025 bits (2651), Expect = 0.0
Identities = 500/500 (100%), Positives = 500/500 (100%)
Query: 1 MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL 60
MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL
Sbjct: 1 MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL 60
Query: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDG 120
PSACGGPTRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDG
Sbjct: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDG 120
Query: 121 KEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLV 180
KEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLV
Sbjct: 121 KEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLV 180
Query: 181 FDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSSRFK 240
FDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSSRFK
Sbjct: 181 FDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSSRFK 240
Query: 241 NLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKILVEGANA 300
NLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKILVEGANA
Sbjct: 241 NLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKILVEGANA 300
Query: 301 ALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINE 360
ALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINE
Sbjct: 301 ALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINE 360
Query: 361 IGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLGEVKVGV 420
IGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLGEVKVGV
Sbjct: 361 IGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLGEVKVGV 420
Query: 421 SYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLPPQAQNYIRFVENHV 480
SYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLPPQAQNYIRFVENHV
Sbjct: 421 SYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLPPQAQNYIRFVENHV 480
Query: 481 GVAVKWVGVGKSRESMIQLF 500
GVAVKWVGVGKSRESMIQLF
Sbjct: 481 GVAVKWVGVGKSRESMIQLF 500
>gi|22748717 adenylosuccinate synthase like 1 isoform 2 [Homo
sapiens]
Length = 457
Score = 803 bits (2074), Expect = 0.0
Identities = 393/394 (99%), Positives = 394/394 (100%)
Query: 107 RGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKD 166
+GGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKD
Sbjct: 64 QGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKD 123
Query: 167 WEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRIC 226
WEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRIC
Sbjct: 124 WEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRIC 183
Query: 227 DLLSDFDEFSSRFKNLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEAL 286
DLLSDFDEFSSRFKNLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEAL
Sbjct: 184 DLLSDFDEFSSRFKNLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEAL 243
Query: 287 HGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTT 346
HGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTT
Sbjct: 244 HGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTT 303
Query: 347 RVGIGAFPTEQINEIGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTK 406
RVGIGAFPTEQINEIGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTK
Sbjct: 304 RVGIGAFPTEQINEIGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTK 363
Query: 407 LDILDVLGEVKVGVSYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLP 466
LDILDVLGEVKVGVSYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLP
Sbjct: 364 LDILDVLGEVKVGVSYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLP 423
Query: 467 PQAQNYIRFVENHVGVAVKWVGVGKSRESMIQLF 500
PQAQNYIRFVENHVGVAVKWVGVGKSRESMIQLF
Sbjct: 424 PQAQNYIRFVENHVGVAVKWVGVGKSRESMIQLF 457
>gi|34577063 adenylosuccinate synthase [Homo sapiens]
Length = 456
Score = 652 bits (1681), Expect = 0.0
Identities = 310/396 (78%), Positives = 359/396 (90%), Gaps = 2/396 (0%)
Query: 107 RGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKG--L 164
+GGNNAGHTVVVD EYDFHLLPSGIIN +FIGNGVVIHLPGLFEEAEKN +KG L
Sbjct: 61 QGGNNAGHTVVVDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGL 120
Query: 165 KDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLR 224
+ WEKRLIISDRAH+VFDFHQA DG+QE QRQ Q GKN+GTTKKGIGP YSSKAAR+GLR
Sbjct: 121 EGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLR 180
Query: 225 ICDLLSDFDEFSSRFKNLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYE 284
+CDL+SDFD FS RFK LA+Q++S++PTLEIDIEG+L++LKG+ E+I+PMVRDGVYF+YE
Sbjct: 181 MCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKIKPMVRDGVYFLYE 240
Query: 285 ALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAY 344
ALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLG+PPQN+G+VYGVVKAY
Sbjct: 241 ALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAY 300
Query: 345 TTRVGIGAFPTEQINEIGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALAL 404
TTRVGIGAFPTEQ NEIG LLQTRG E+GVTTGRKRRCGWLDL++L+YAHM+NGFTALAL
Sbjct: 301 TTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALAL 360
Query: 405 TKLDILDVLGEVKVGVSYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWED 464
TKLDILD+ E+KVGV+YKL+G+ IP+ PANQE+L KVEV+Y+TLPGW D + AR +++
Sbjct: 361 TKLDILDMFTEIKVGVAYKLDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKE 420
Query: 465 LPPQAQNYIRFVENHVGVAVKWVGVGKSRESMIQLF 500
LP AQNY+RF+E+ + + VKW+GVGKSRESMIQLF
Sbjct: 421 LPVNAQNYVRFIEDELQIPVKWIGVGKSRESMIQLF 456
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 37.4 bits (85), Expect = 0.032
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 3 GRSCGVATQRQGGGQR----PTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTP 58
G G+ GGG + P L TL + PA + LP PP +L G P PTP
Sbjct: 234 GLVTGLPNPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPPPHAL----GSRGP--PTP 287
Query: 59 HLPSACGGPTRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGN 110
P A GGP LG + S+A T G G+ GG+R G+
Sbjct: 288 APPGAPGGP--ACLGGTPGVSATSSSASSSTSSSVAEVGVGA---GGKRPGS 334
>gi|42491362 IKK interacting protein isoform 2 [Homo sapiens]
Length = 350
Score = 36.6 bits (83), Expect = 0.055
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 163 GLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTG 222
GLK + I + LV D D +QE++ + ++ + T K IG SS RT
Sbjct: 169 GLKITSVKTDIRRISGLVTDVISLTDSVQELENKIEKVEK--NTVKNIGDLLSSSIDRTA 226
Query: 223 L-----------------RICDLLSDFDEFSSRFKNLAHQHQSMFPTLEI--DIEGQLKR 263
+ +L SDFD+ + RF +L + T+ D++ ++
Sbjct: 227 TLRKTASENSQRINSVKKTLTELKSDFDKHTDRFLSLEGDRAKVLKTVTFANDLKPKVYN 286
Query: 264 LKGFAERIRPMVRD 277
LK R+ P+V D
Sbjct: 287 LKKDFSRLEPLVND 300
>gi|239753956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 35.4 bits (80), Expect = 0.12
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 17 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 70
Query: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
G + G TC AG +P G G
Sbjct: 71 GGDTGADTCPKVPRAGPEVASPHGPGAG 98
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 35.0 bits (79), Expect = 0.16
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 14 GGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVP--AQPTPHLPSACGGPTRVT 71
G GQRP N +L +S S +P LPP SLQ L VP A P PH P++ GP R+
Sbjct: 161 GTGQRPRNTSLAQAS---RSGTVPGLPPASLQPL---RVPYFAPPGPHDPTS-RGPGRLL 213
Query: 72 LGE 74
E
Sbjct: 214 TRE 216
>gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo
sapiens]
Length = 195
Score = 33.9 bits (76), Expect = 0.35
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 15 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 68
Query: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
G + G C AG ++P G G
Sbjct: 69 GGDTGADACPKVPGAGPEVVSPHGPGAG 96
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 33.5 bits (75), Expect = 0.46
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 14 GGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACG 65
G GQRP N +L +S S +P LPP SLQ L + A P PH P++ G
Sbjct: 161 GTGQRPRNTSLAQAS---RSGTVPGLPPASLQPLRLPYL-APPGPHDPTSRG 208
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.5 bits (75), Expect = 0.46
Identities = 32/122 (26%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 8 VATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGP 67
+A R GGQ ++ + P PW PP + + H A G
Sbjct: 188 LADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADGAH 247
Query: 68 TRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDGKEYDFHL 127
T GGH R+ G G GGERG G VV G Y F
Sbjct: 248 T----------------GGGHGWHCGRSGGRG----GGERGAAGPGALAVVGGISYIFLS 287
Query: 128 LP 129
P
Sbjct: 288 FP 289
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.5 bits (75), Expect = 0.46
Identities = 32/122 (26%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 8 VATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGP 67
+A R GGQ ++ + P PW PP + + H A G
Sbjct: 171 LADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADGAH 230
Query: 68 TRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDGKEYDFHL 127
T GGH R+ G G GGERG G VV G Y F
Sbjct: 231 T----------------GGGHGWHCGRSGGRG----GGERGAAGPGALAVVGGISYIFLS 270
Query: 128 LP 129
P
Sbjct: 271 FP 272
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 33.5 bits (75), Expect = 0.46
Identities = 32/122 (26%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 8 VATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGP 67
+A R GGQ ++ + P PW PP + + H A G
Sbjct: 363 LADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADGAH 422
Query: 68 TRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGGNNAGHTVVVDGKEYDFHL 127
T GGH R+ G G GGERG G VV G Y F
Sbjct: 423 T----------------GGGHGWHCGRSGGRG----GGERGAAGPGALAVVGGISYIFLS 462
Query: 128 LP 129
P
Sbjct: 463 FP 464
>gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo
sapiens]
Length = 197
Score = 33.1 bits (74), Expect = 0.60
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 17 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 70
Query: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
G + G C AG +P G G
Sbjct: 71 GGDTGADACPKVPGAGPEVASPHGPGAG 98
>gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo
sapiens]
Length = 1544
Score = 33.1 bits (74), Expect = 0.60
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 22 LALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT----LGEE 75
+ALT+ P S +P + GH P +PH P A G R+T +GEE
Sbjct: 140 VALTVQGRPPGSPQIPLADSEVEPSVIGHMSPIMTSPHSPGASGNMERITSPVLMGEE 197
>gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo
sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 8 VATQRQGG----GQRPTNLAL-TLSSSPAHSTALPWLPP--RSLQLLSGHSVPAQPTPHL 60
VA+ R G GQ LA+ T P H L P R Q ++GH+ +PTP
Sbjct: 373 VASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPD 432
Query: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSLTPGGERGGNNAGH 114
GPTR + W SH G L R G + ER G ++ H
Sbjct: 433 AQPLTGPTRTS-----TWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 483
>gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo
sapiens]
Length = 441
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 8 VATQRQGG----GQRPTNLAL-TLSSSPAHSTALPWLPP--RSLQLLSGHSVPAQPTPHL 60
VA+ R G GQ LA+ T P H L P R Q ++GH+ +PTP
Sbjct: 311 VASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPD 370
Query: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSLTPGGERGGNNAGH 114
GPTR + W SH G L R G + ER G ++ H
Sbjct: 371 AQPLTGPTRTS-----TWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 421
>gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo
sapiens]
Length = 441
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 8 VATQRQGG----GQRPTNLAL-TLSSSPAHSTALPWLPP--RSLQLLSGHSVPAQPTPHL 60
VA+ R G GQ LA+ T P H L P R Q ++GH+ +PTP
Sbjct: 311 VASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPD 370
Query: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSLTPGGERGGNNAGH 114
GPTR + W SH G L R G + ER G ++ H
Sbjct: 371 AQPLTGPTRTS-----TWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 421
>gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo
sapiens]
Length = 393
Score = 32.3 bits (72), Expect = 1.0
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 8 VATQRQGG----GQRPTNLAL-TLSSSPAHSTALPWLPP--RSLQLLSGHSVPAQPTPHL 60
VA+ R G GQ LA+ T P H L P R Q ++GH+ +PTP
Sbjct: 263 VASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPD 322
Query: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSLTPGGERGGNNAGH 114
GPTR + W SH G L R G + ER G ++ H
Sbjct: 323 AQPLTGPTRTS-----TWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 373
>gi|157266326 oculocutaneous albinism II [Homo sapiens]
Length = 838
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 49 GHSVPAQPTPHL--PSACGGPTRVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGE 106
G P P L S G + G+ R R G H+C PR AG S P G+
Sbjct: 8 GRRYPGAPAVELLQTSVPSGLAELVAGKRRLPRGAGGADPSHSC-PRGAAGQSSWAPAGQ 66
Query: 107 -------RGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKN 159
+G +++ + + D + + ++ G+ + F AE++
Sbjct: 67 EFASFLTKGRSHSSLPQMSSSRSKDSCFTENTPLLRNSLQEKGSRCIPVYHPEFITAEES 126
Query: 160 EKKGLKDWEKRLIIS 174
+ DWE+R ++S
Sbjct: 127 WEDSSADWERRYLLS 141
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 31.2 bits (69), Expect = 2.3
Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 1 MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL 60
++GR G +RQ P SS A P + H P +PTP +
Sbjct: 139 LIGRLLGANQKRQRMPPLPP------SSPKARMERASRKLPSRVNSRPPHPAPTRPTPRV 192
Query: 61 PSACGGPTRVTLGEERAW----RSHGSNAGGHTCLPRRTAGAG--SLTPGGERG 108
G R G+ R W R ++G PRR G G +L G RG
Sbjct: 193 QGGFGREPRAAAGQGRGWLPPCRLRLQDSG-----PRRRPGPGPPALRSGRSRG 241
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 31.2 bits (69), Expect = 2.3
Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 1 MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL 60
++GR G +RQ P SS A P + H P +PTP +
Sbjct: 139 LIGRLLGANQKRQRMPPLPP------SSPKARMERASRKLPSRVNSRPPHPAPTRPTPRV 192
Query: 61 PSACGGPTRVTLGEERAW----RSHGSNAGGHTCLPRRTAGAG--SLTPGGERG 108
G R G+ R W R ++G PRR G G +L G RG
Sbjct: 193 QGGFGREPRAAAGQGRGWLPPCRLRLQDSG-----PRRRPGPGPPALRSGRSRG 241
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 2.3
Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 1 MVGRSCGVATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHL 60
++GR G +RQ P SS A P + H P +PTP +
Sbjct: 139 LIGRLLGANQKRQRMPPLPP------SSPKARMERASRKLPSRVNSRPPHPAPTRPTPRV 192
Query: 61 PSACGGPTRVTLGEERAW----RSHGSNAGGHTCLPRRTAGAG--SLTPGGERG 108
G R G+ R W R ++G PRR G G +L G RG
Sbjct: 193 QGGFGREPRAAAGQGRGWLPPCRLRLQDSG-----PRRRPGPGPPALRSGRSRG 241
>gi|38454194 tubulin, gamma complex associated protein 4 [Homo
sapiens]
Length = 666
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 196 QAQEGKNIGTTKKGI-----GPTYSSKAARTGLRICDLLSDFDEFSSRFKNLAHQHQSMF 250
Q E +N+ T+KG T++++ R + L DF++ R ++ +H
Sbjct: 284 QMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKL 343
Query: 251 PTLEIDIEGQLKRLKGF 267
E D+ GQLK +K F
Sbjct: 344 MVEESDLLGQLKIIKDF 360
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 19/77 (24%)
Query: 14 GGGQRPTNL--------ALTLSSSPAHSTALPWLPPRS---LQLLSGHSVPAQPTPHLPS 62
G GQ P +L + S+SPA S + P S +Q L+G S PA +P LPS
Sbjct: 818 GAGQTPRHLKRLQSLIPSALGSASPASSPSQVDTPSSSSFHIQQLAGFSAPAGLSPLLPS 877
Query: 63 --------ACGGPTRVT 71
ACG P+ T
Sbjct: 878 SSSSPPPGACGSPSAPT 894
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.4 bits (67), Expect = 3.9
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 3 GRSCGVATQRQGGGQRPTNLALTLSSSPAH---STALPWLPPRSLQLLSGHSVPAQPTPH 59
GR C A R + P ++ SP H ++A P PPR Q +G PA P P
Sbjct: 80 GRECACARARLARARSPHSM------SPTHFHGASAPPPPPPRLAQPRAG---PAPPPPG 130
Query: 60 LPSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSL-TPGGE 106
PS R + + R +S G + C +P A A L P GE
Sbjct: 131 PPSL----RRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGE 176
>gi|239743200 PREDICTED: hypothetical protein XP_002342802 [Homo
sapiens]
Length = 188
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 18/72 (25%)
Query: 18 RPTNLALTLSSSPA----HSTALPWLPPRSLQLLSGH-------SVPA-------QPTPH 59
RPT+ + PA P LPPR L S H VPA +P+
Sbjct: 69 RPTSCLPVACTGPALAGEQPLQAPLLPPRGLSRPSSHPTVASWGQVPACLPAVGERPSSS 128
Query: 60 LPSACGGPTRVT 71
L AC GPTRV+
Sbjct: 129 LTVACLGPTRVS 140
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 30.4 bits (67), Expect = 3.9
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 3 GRSCGVATQRQGGGQRPTNLALTLSSSPAH---STALPWLPPRSLQLLSGHSVPAQPTPH 59
GR C A R + P ++ SP H ++A P PPR Q +G PA P P
Sbjct: 80 GRECACARARLARARSPHSM------SPTHFHGASAPPPPPPRLAQPRAG---PAPPPPG 130
Query: 60 LPSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSL-TPGGE 106
PS R + + R +S G + C +P A A L P GE
Sbjct: 131 PPSL----RRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGE 176
>gi|239508875 PREDICTED: similar to Putative uncharacterized protein
FLJ46235 [Homo sapiens]
Length = 188
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 18/72 (25%)
Query: 18 RPTNLALTLSSSPA----HSTALPWLPPRSLQLLSGH-------SVPA-------QPTPH 59
RPT+ + PA P LPPR L S H VPA +P+
Sbjct: 69 RPTSCLPVACTGPALAGEQPLQAPLLPPRGLSRPSSHPTVASWGQVPACLPAVGERPSSS 128
Query: 60 LPSACGGPTRVT 71
L AC GPTRV+
Sbjct: 129 LTVACLGPTRVS 140
>gi|225690502 junctophilin 4 [Homo sapiens]
Length = 628
Score = 30.4 bits (67), Expect = 3.9
Identities = 33/101 (32%), Positives = 36/101 (35%), Gaps = 18/101 (17%)
Query: 9 ATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPT 68
A +R G G R S P H AL PR L SGHS P P P LP
Sbjct: 135 AGKRHGYGVR--------QSVPYHQAAL-LRSPRRTSLDSGHSDPPTPPPPLPLP----- 180
Query: 69 RVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGG 109
G+E + GS G P GA S GG
Sbjct: 181 ----GDEGGSPASGSRGGFVLAGPGDADGASSRKRTPAAGG 217
>gi|225690500 junctophilin 4 [Homo sapiens]
Length = 628
Score = 30.4 bits (67), Expect = 3.9
Identities = 33/101 (32%), Positives = 36/101 (35%), Gaps = 18/101 (17%)
Query: 9 ATQRQGGGQRPTNLALTLSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPT 68
A +R G G R S P H AL PR L SGHS P P P LP
Sbjct: 135 AGKRHGYGVR--------QSVPYHQAAL-LRSPRRTSLDSGHSDPPTPPPPLPLP----- 180
Query: 69 RVTLGEERAWRSHGSNAGGHTCLPRRTAGAGSLTPGGERGG 109
G+E + GS G P GA S GG
Sbjct: 181 ----GDEGGSPASGSRGGFVLAGPGDADGASSRKRTPAAGG 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,841,944
Number of Sequences: 37866
Number of extensions: 1036314
Number of successful extensions: 3102
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3081
Number of HSP's gapped (non-prelim): 57
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.