Guide to the Human Genome
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Name: SERINC3 Sequence: fasta or formatted (473aa) NCBI GI: 39812106
Description:

tumor differentially expressed protein 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {473aa} tumor differentially expressed protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         30           2
 C cysteine            3.2         15           2
 D aspartate           3.8         18           1
 E glutamate           3.0         14           2
 F phenylalanine       6.1         29           3
 G glycine             5.5         26           2
 H histidine           1.3          6           1
 I isoleucine          7.0         33           2
 K lysine              4.2         20           2
 L leucine            11.8         56           3
 M methionine          3.2         15           2
 N asparagine          3.4         16           1
 P proline             4.2         20           2
 Q glutamine           1.9          9           1
 R arginine            2.7         13           2
 S serine             11.8         56           3
 T threonine           6.1         29           3
 V valine              7.6         36           2
 W tryptophan          2.5         12           1
 Y tyrosine            4.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor differentially expressed protein 1 
SERINC3               1.000   tumor differentially expressed protein 1 
SERINC1               0.569   serine incorporator 1 
SERINC2               0.479   tumor differentially expressed 2-like 
SERINC5               0.258   developmentally regulated protein TPO1 
SERINC4               0.076   serine incorporator 4 
LOC100288635          0.013   PREDICTED: hypothetical protein 
LOC100288635          0.013   PREDICTED: hypothetical protein XP_002343184 
ATP13A3               0.010   ATPase type 13A3 
LOC100134147          0.009   PREDICTED: hypothetical protein 
KIR3DL2               0.006   killer cell immunoglobulin-like receptor, three dom...
FBXW12                0.005   F-box and WD repeat domain containing 12 isoform 3 ...
FBXW12                0.005   F-box and WD repeat domain containing 12 isoform 2 ...
FBXW12                0.005   F-box and WD repeat domain containing 12 isoform 1 ...
SLC17A1               0.005   solute carrier family 17 (sodium phosphate), member...
LOC100128719          0.004   PREDICTED: hypothetical protein, partial 
LOC100128719          0.004   PREDICTED: hypothetical protein, partial 
CLDN3                 0.004   claudin 3 
SLC17A4               0.004   solute carrier family 17 (sodium phosphate), member 4...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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