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Search of human proteins with 38570105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38570105 Ras-interacting protein 1 [Homo sapiens]
(963 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 1952 0.0
gi|148612825 Rap GTPase interactor [Homo sapiens] 481 e-135
gi|153945715 myosin VC [Homo sapiens] 57 6e-08
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 52 3e-06
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 52 3e-06
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 52 3e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 51 6e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 51 6e-06
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 46 1e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 46 1e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 45 2e-04
gi|33188461 GATA binding protein 4 [Homo sapiens] 45 3e-04
gi|215982794 myosin VA isoform 2 [Homo sapiens] 45 4e-04
gi|215982791 myosin VA isoform 1 [Homo sapiens] 45 4e-04
gi|122937345 myosin VB [Homo sapiens] 44 7e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 44 0.001
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 44 0.001
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] 43 0.001
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 42 0.002
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|40288197 GATA binding protein 6 [Homo sapiens] 42 0.002
gi|73476377 LBXCOR1 homolog [Homo sapiens] 42 0.002
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 41 0.005
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 40 0.014
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 40 0.014
gi|153792074 proline rich 12 [Homo sapiens] 40 0.014
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 39 0.018
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 39 0.018
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 39 0.018
gi|13376611 zinc finger protein 703 [Homo sapiens] 39 0.023
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 1952 bits (5057), Expect = 0.0
Identities = 963/963 (100%), Positives = 963/963 (100%)
Query: 1 MLSGERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPL 60
MLSGERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPL
Sbjct: 1 MLSGERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPL 60
Query: 61 PPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWAS 120
PPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWAS
Sbjct: 61 PPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWAS 120
Query: 121 EKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEAL 180
EKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEAL
Sbjct: 121 EKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEAL 180
Query: 181 ERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQE 240
ERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQE
Sbjct: 181 ERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQE 240
Query: 241 LWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASP 300
LWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASP
Sbjct: 241 LWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASP 300
Query: 301 GPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAADAQIGT 360
GPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAADAQIGT
Sbjct: 301 GPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAADAQIGT 360
Query: 361 ADPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYVMTREQHVFGRGGNSSGRGGSP 420
ADPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYVMTREQHVFGRGGNSSGRGGSP
Sbjct: 361 ADPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYVMTREQHVFGRGGNSSGRGGSP 420
Query: 421 APYVDTFLNAPDILPRHCTVRAGPEHPAMVRPSRGAPVTHNGCLLLREAELHPGDLLGLG 480
APYVDTFLNAPDILPRHCTVRAGPEHPAMVRPSRGAPVTHNGCLLLREAELHPGDLLGLG
Sbjct: 421 APYVDTFLNAPDILPRHCTVRAGPEHPAMVRPSRGAPVTHNGCLLLREAELHPGDLLGLG 480
Query: 481 EHFLFMYKDPRTGGSGPARPPWLPARPGATPPGPGWAFSCRLCGRGLQERGEALAAYLDG 540
EHFLFMYKDPRTGGSGPARPPWLPARPGATPPGPGWAFSCRLCGRGLQERGEALAAYLDG
Sbjct: 481 EHFLFMYKDPRTGGSGPARPPWLPARPGATPPGPGWAFSCRLCGRGLQERGEALAAYLDG 540
Query: 541 REPVLRFRPREEEALLGEIVRAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRLLG 600
REPVLRFRPREEEALLGEIVRAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRLLG
Sbjct: 541 REPVLRFRPREEEALLGEIVRAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRLLG 600
Query: 601 RLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLSFV 660
RLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLSFV
Sbjct: 601 RLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLSFV 660
Query: 661 QEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTLPALLD 720
QEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTLPALLD
Sbjct: 661 QEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTLPALLD 720
Query: 721 SNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSN 780
SNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSN
Sbjct: 721 SNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSN 780
Query: 781 ASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSMAVNLLC 840
ASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSMAVNLLC
Sbjct: 781 ASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSMAVNLLC 840
Query: 841 VPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAEREAVDTGDI 900
VPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAEREAVDTGDI
Sbjct: 841 VPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAEREAVDTGDI 900
Query: 901 FESFSSHPPLILPLGSSRLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANYRHGPPVA 960
FESFSSHPPLILPLGSSRLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANYRHGPPVA
Sbjct: 901 FESFSSHPPLILPLGSSRLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANYRHGPPVA 960
Query: 961 TSP 963
TSP
Sbjct: 961 TSP 963
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 481 bits (1239), Expect = e-135
Identities = 315/842 (37%), Positives = 447/842 (53%), Gaps = 89/842 (10%)
Query: 130 GVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSP 189
G + +P + + PGVLK+FG + +G +YKSVLAT S+ARELV EALERY L
Sbjct: 47 GASDDPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQ 106
Query: 190 GGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWA 249
G + LCD +G+ AG W+A RV GDSE+PLL+QELW+ R G +
Sbjct: 107 AG---------QYVLCDVVGQAGDAGQ---RWQARCFRVFGDSEKPLLIQELWKPREGLS 154
Query: 250 RRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAP 309
RRFELR R + L + + G A + R Q++R++ +P P G
Sbjct: 155 RRFELRKRSDVEELAAKEVDTITA-GINAQARRLQRSRAKG--------TPTPALGDA-- 203
Query: 310 AGSGGKERSENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAADAQIGTADPGDFDQL 369
S LRR+VSE SL ++ P AA G +PG D +
Sbjct: 204 ------RSSPPPRLRRTVSETSLS------------PVNALPAAAQ---GPEEPGP-DAM 241
Query: 370 TQCLIQAPSNRPYFLLLQGYQDAQDFVVYVMTREQHVFGRGGNSSGRGGSPAPYVDTFLN 429
L Q+P + LLLQGY D +VYV+ R++H G+ R S P + L+
Sbjct: 242 RYSLYQSP----HLLLLQGYSQQHDSLVYVLNRDRHTVGQ------RTPSSKPSIS--LS 289
Query: 430 APDILPRHCTVRAGPEHPA-------MVRPSRGAPVTHNGCLL-LREAELHPGDLLGLGE 481
APDILP HCT+R P + ++ P GA ++ N + R LH GDLL LG
Sbjct: 290 APDILPLHCTIRRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGL 349
Query: 482 HFLFMYKDPRTGGSGPARPPWLPARPGATPPGPGWAFSCRLCGRGLQERGEAL---AAYL 538
++L ++KDP PAR AR A P SCRLCG L RG A AA
Sbjct: 350 YYLLLFKDPAQAQPLPARAL---ARLRAVPQ------SCRLCGAALGARGAASPTQAALP 400
Query: 539 DGREPVLRFRPREEEALLGEIVRAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRL 598
++ +L F P E+ LL I+ G GD L PA LL LC+QHSA + G +L
Sbjct: 401 RRQQLLLEFEPHLEDTLLQRIMTLIEPG-GDDHKLTPAFLLCLCIQHSATHFQPGTFGQL 459
Query: 599 LGRLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLS 658
L ++ARLI+E VWEK KE+ ++Q + E + + +L+P++ WM+N+ ELL
Sbjct: 460 LLKIARLIRETVWEKTKELAEKQAQLQ-EPISLASCAMADLVPDLQPILFWMSNSIELLY 518
Query: 659 FVQEK----VLEMEKEAD---QEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTL 711
F+Q+K + ME++ D ++ L +EAMA+L+EV++ FQQ VYY++K+L
Sbjct: 519 FIQQKCPLYMQSMEEQLDITGSKESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSL 578
Query: 712 YSTLPALLDSNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHPDLVSQT 771
Y LPALL+ PF E + +P LR + V+QAAL+L Q ++HP++ SQ
Sbjct: 579 YICLPALLECPPFQT--ERRESWSSAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQM 636
Query: 772 FGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRK 831
YLFFFS LLN L++RG + W R VQ L +L+W++ AG G FF+K
Sbjct: 637 LAYLFFFSGTLLLNQLLDRGPSLSCFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQK 696
Query: 832 LSMAVNLLCVPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAE 891
LS +NLL PR L++ SW++LR P L+PAQLH LL+HYQL GP + W+P +
Sbjct: 697 LSCTLNLLATPRAQLIQMSWTALRAAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQD 756
Query: 892 R-EAVDTGDIFESFSSHPPLILPLGSSRLRLTGPVTDDALHRELRRLRRLLWDLEQQELP 950
EA + D+ ES+ + PP++LP ++ L DD++++ L +R LW L + P
Sbjct: 757 SPEAFRSEDVLESYENPPPIVLPSDGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASP 816
Query: 951 AN 952
+
Sbjct: 817 GS 818
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 57.4 bits (137), Expect = 6e-08
Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 57/322 (17%)
Query: 544 VLRFRPREEEALLGEIVRAAAAGSGDLPPLG---------PATLLALCVQHSARELELGH 594
+L+++ +E L+ ++ DL P G PA +L +CV+++ +
Sbjct: 1363 MLQYKREDEAKLIQNLIL-------DLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANM 1415
Query: 595 LPRLLGRLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTT 654
L L+ IK+ V E +++ L W++NT
Sbjct: 1416 LKSLMNSTINGIKQVVKEHLEDF--------------------------EMLSFWLSNTC 1449
Query: 655 ELLSFVQEKVLE---MEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTL 711
L+ +++ E M+ + Q++ N+ +L E +L +V + + Q + + K +
Sbjct: 1450 HFLNCLKQYSGEEEFMKHNSPQQNKNCLNNFDL-SEYRQILSDVAIRIYHQFIIIMEKNI 1508
Query: 712 YSTL-PALLDSNPFTAGAELPGPGAELGAMP----PGLRPTLGVFQAALELTSQCE--LH 764
+ P +L+ + L G + G T + Q + T+ C+ L
Sbjct: 1509 QPIIVPGMLEYESLQGISGLKPTGFRKRSSSIDDTDGYTMTSVLQQLSYFYTTMCQNGLD 1568
Query: 765 PDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGL-GD 823
P+LV Q LFF A LNSL R + + +QIR N+ + +WL+ L
Sbjct: 1569 PELVRQAVKQLFFLIGAVTLNSLFLR---KDMCSCRKGMQIRCNISYLEEWLKDKNLQNS 1625
Query: 824 IATEFFRKLSMAVNLLCVPRTS 845
+A E LS A LL V +T+
Sbjct: 1626 LAKETLEPLSQAAWLLQVKKTT 1647
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 52.0 bits (123), Expect = 3e-06
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 32/233 (13%)
Query: 646 LMLWMANTTELLSFVQEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVY 705
L WMAN +ELL+F+++ D++ ++ D A +L ++ F+ V+
Sbjct: 687 LAFWMANASELLNFIKQ---------DRDLSRITLD------AQDVLAHLVQMAFKYLVH 731
Query: 706 YLTKTLYSTLPALLDSNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHP 765
L L + +PA LD E P + L A+ L +C ++
Sbjct: 732 CLQSELNNYMPAFLDD------------PEENSLQRPKIDDVLHTLTGAMSLLRRCRVNA 779
Query: 766 DLVSQTFGYLFFFSNASLLNSLM-ERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDI 824
L Q F LF F N L N L+ + G + W IR L + W + GL
Sbjct: 780 ALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAI--IRQQLGHIEAWAEKQGLELA 837
Query: 825 ATEFFRKLSMAVNLLCVPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGP 877
A ++ A LL + + + ++ + L QL LL +Y P
Sbjct: 838 ADCHLSRIVQATTLLTMDKYA--PDDIPNINSTCFKLNSLQLQALLQNYHCAP 888
Score = 35.0 bits (79), Expect = 0.34
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 146 GVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALC 205
G L+I+ L YK++L + A VAEALE+YGL E + +
Sbjct: 247 GTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGL---------EKENPKDYCIA 297
Query: 206 DALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPG 247
+ P A S E A+ + +L D E PL + W + G
Sbjct: 298 RVMLPPGAQ--HSDEKGAKEI-ILDDDECPLQIFREWPSDKG 336
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 52.0 bits (123), Expect = 3e-06
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 32/233 (13%)
Query: 646 LMLWMANTTELLSFVQEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVY 705
L WMAN +ELL+F+++ D++ ++ D A +L ++ F+ V+
Sbjct: 688 LAFWMANASELLNFIKQ---------DRDLSRITLD------AQDVLAHLVQMAFKYLVH 732
Query: 706 YLTKTLYSTLPALLDSNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHP 765
L L + +PA LD E P + L A+ L +C ++
Sbjct: 733 CLQSELNNYMPAFLDD------------PEENSLQRPKIDDVLHTLTGAMSLLRRCRVNA 780
Query: 766 DLVSQTFGYLFFFSNASLLNSLM-ERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDI 824
L Q F LF F N L N L+ + G + W IR L + W + GL
Sbjct: 781 ALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAI--IRQQLGHIEAWAEKQGLELA 838
Query: 825 ATEFFRKLSMAVNLLCVPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGP 877
A ++ A LL + + + ++ + L QL LL +Y P
Sbjct: 839 ADCHLSRIVQATTLLTMDKYA--PDDIPNINSTCFKLNSLQLQALLQNYHCAP 889
Score = 35.0 bits (79), Expect = 0.34
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 146 GVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALC 205
G L+I+ L YK++L + A VAEALE+YGL E + +
Sbjct: 248 GTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGL---------EKENPKDYCIA 298
Query: 206 DALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPG 247
+ P A S E A+ + +L D E PL + W + G
Sbjct: 299 RVMLPPGAQ--HSDEKGAKEI-ILDDDECPLQIFREWPSDKG 337
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 52.0 bits (123), Expect = 3e-06
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 32/233 (13%)
Query: 646 LMLWMANTTELLSFVQEKVLEMEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVY 705
L WMAN +ELL+F+++ D++ ++ D A +L ++ F+ V+
Sbjct: 672 LAFWMANASELLNFIKQ---------DRDLSRITLD------AQDVLAHLVQMAFKYLVH 716
Query: 706 YLTKTLYSTLPALLDSNPFTAGAELPGPGAELGAMPPGLRPTLGVFQAALELTSQCELHP 765
L L + +PA LD E P + L A+ L +C ++
Sbjct: 717 CLQSELNNYMPAFLDD------------PEENSLQRPKIDDVLHTLTGAMSLLRRCRVNA 764
Query: 766 DLVSQTFGYLFFFSNASLLNSLM-ERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDI 824
L Q F LF F N L N L+ + G + W IR L + W + GL
Sbjct: 765 ALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAI--IRQQLGHIEAWAEKQGLELA 822
Query: 825 ATEFFRKLSMAVNLLCVPRTSLLKASWSSLRTDHPTLTPAQLHHLLSHYQLGP 877
A ++ A LL + + + ++ + L QL LL +Y P
Sbjct: 823 ADCHLSRIVQATTLLTMDKYA--PDDIPNINSTCFKLNSLQLQALLQNYHCAP 873
Score = 35.8 bits (81), Expect = 0.20
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 146 GVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALC 205
G L+I+ L YK++L + A VAEALE+YGL E + +
Sbjct: 247 GTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGL---------EKENPKDYCIA 297
Query: 206 DALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREE---ARR 262
+ P A S E A+ + +L D E PL + W + G F+L+ R ++
Sbjct: 298 RVMLPPGAQ--HSDEKGAKEI-ILDDDECPLQIFREWPSDKG-ILVFQLKRRPPDHIPKK 353
Query: 263 LEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPG---PGTGSGAPAGSGGKERSE 319
++ G + K + RA G P P +P GS +++ +
Sbjct: 354 TKKHLEG------------KTPKGKERADGSGYGSTLPPEKLPYLVELSPDGSDSRDKPK 401
Query: 320 NLSLRRSVSELSLQ 333
L+ SV+E+ +
Sbjct: 402 LYRLQLSVTEVGTE 415
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.8 bits (120), Expect = 6e-06
Identities = 140/546 (25%), Positives = 181/546 (33%), Gaps = 68/546 (12%)
Query: 25 INSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGASGS 84
I P+ +G + P A K D G + P+ PP P G V G A GS
Sbjct: 760 IAGPKGDRGDVGEKGPEGAPGK----DGGRGLTGPIGPPGPAGANGEKGEVGPPGPA-GS 814
Query: 85 RAKRISQLFRGSGTGTTGSSG-AGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATA 143
R + RG TG G +G AG PG G + + + AP P + A
Sbjct: 815 AGARGAPGERGE-TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 144 PPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPG--GGPGESSCVDA 201
P G + G A GA +T A + G G+PG G PG S
Sbjct: 874 PQGPTGVTGPKGARGAQ-----GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG---- 924
Query: 202 FALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFE----LRGR 257
G A G RA + G + P E P A L G+
Sbjct: 925 -----KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 979
Query: 258 EEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPAGSGGKER 317
L + G G PS P K + ASG P G PAG G+E
Sbjct: 980 RGIVGLPGQR-GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038
Query: 318 SENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAAD--AQIGTADP----GDFDQLTQ 371
S G + +R + APGA G A P GD +
Sbjct: 1039 SPGAD-----GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGA 1093
Query: 372 CLIQAPSNRPYFLLLQGYQDAQ-DFVVYVMTREQHVFGRGGNSSGRG--GSPAPYVDTFL 428
PS +QG Q + D E+ + G G + +G G P P D
Sbjct: 1094 QGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGA 1153
Query: 429 NAPDILPRHCTVRAGPEHPAMVRPSRGAPVTHNGCLLLREAELHPGDLLGLGEHFLFMYK 488
+ P AGP P P P +G A PG + G
Sbjct: 1154 SGP----------AGPSGPRGP-PGPVGPSGKDG------ANGIPGPIGPPGPR------ 1190
Query: 489 DPRTGGSGPARPPWLPARPGAT-PPGPGWAFSCRLCGRGLQERGEALAAYLDGREPVLRF 547
R+G +GPA PP P PG PPGPG S G G +E+G Y+ +
Sbjct: 1191 -GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSA-FAGLGPREKGPDPLQYMRADQAAGGL 1248
Query: 548 RPREEE 553
R + E
Sbjct: 1249 RQHDAE 1254
Score = 37.4 bits (85), Expect = 0.068
Identities = 93/344 (27%), Positives = 111/344 (32%), Gaps = 61/344 (17%)
Query: 4 GERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPS-AASVKSSSSDTGSRSSEPLPP 62
G + E GSP P+G PR + GR P+ AA + + G P P
Sbjct: 306 GVKGESGSPGENGSPGPMG-----PRGLPGERGRTGPAGAAGARGNDGQPG-----PAGP 355
Query: 63 PPPHVELRRVG-----AVKAAGGASGSRAKRISQLFRGSGTGTTGSSG-AGGPGTPG--- 113
P P G K G +G+R +Q RG GT GS G AG G PG
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSPGPAGASGNPGTDG 414
Query: 114 --GAQRWASEKKLPELAAGVAPE-PPLATRATAPPGVLKIFG----AGLASGANYKSVLA 166
GA+ A + P PP AT P G G AG K
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 167 TARSTARELVAEALERYGLAGSPG-----GGPGESSCVD--AFALCDALGRP-AAAGVGS 218
A A + G G PG G PGE F D L P A G
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERG 534
Query: 219 GEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGA 278
A GD RP PG L GR G A +G
Sbjct: 535 PSGLAGPKGANGDPGRP--------GEPGLPGARGLTGRP----------GDAGPQGKVG 576
Query: 279 PSWRPQKNRSRAASG--GA-----ALASPGPGTGSGAPAGSGGK 315
PS P ++ G GA + PGP +G P +G K
Sbjct: 577 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 620
Score = 31.6 bits (70), Expect = 3.7
Identities = 60/246 (24%), Positives = 81/246 (32%), Gaps = 33/246 (13%)
Query: 80 GASGSRAKRISQLFRGSGTGTTGSSGAGG-PGTPGGAQRWASEKKLPELAAGVAPEPPLA 138
G +G + R + +G G G G G PGTPG P PP
Sbjct: 126 GPAGEQGPRGDRGDKGE-KGAPGPRGRDGEPGTPGN------------------PGPPGP 166
Query: 139 TRATAPPGVLKIFGAGLASGANYK---SVLATARSTARELVAEALERYGLAGSPG----- 190
PPG+ F A +A G + K + L + + G AG+PG
Sbjct: 167 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQ 224
Query: 191 GGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWAR 250
G PGE G P G + A G+ P + R PG
Sbjct: 225 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP--GPQGARGFPGTPG 282
Query: 251 RFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPA 310
++G L+ A G A + G S P +N S G L TG A
Sbjct: 283 LPGVKGHRGYPGLD-GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAA 341
Query: 311 GSGGKE 316
G+ G +
Sbjct: 342 GARGND 347
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.8 bits (120), Expect = 6e-06
Identities = 140/546 (25%), Positives = 181/546 (33%), Gaps = 68/546 (12%)
Query: 25 INSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGASGS 84
I P+ +G + P A K D G + P+ PP P G V G A GS
Sbjct: 691 IAGPKGDRGDVGEKGPEGAPGK----DGGRGLTGPIGPPGPAGANGEKGEVGPPGPA-GS 745
Query: 85 RAKRISQLFRGSGTGTTGSSG-AGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATA 143
R + RG TG G +G AG PG G + + + AP P + A
Sbjct: 746 AGARGAPGERGE-TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 144 PPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPG--GGPGESSCVDA 201
P G + G A GA +T A + G G+PG G PG S
Sbjct: 805 PQGPTGVTGPKGARGAQ-----GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG---- 855
Query: 202 FALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFE----LRGR 257
G A G RA + G + P E P A L G+
Sbjct: 856 -----KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 910
Query: 258 EEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPAGSGGKER 317
L + G G PS P K + ASG P G PAG G+E
Sbjct: 911 RGIVGLPGQR-GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969
Query: 318 SENLSLRRSVSELSLQGRRRRQQERRQQALSMAPGAAD--AQIGTADP----GDFDQLTQ 371
S G + +R + APGA G A P GD +
Sbjct: 970 SPGAD-----GPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGA 1024
Query: 372 CLIQAPSNRPYFLLLQGYQDAQ-DFVVYVMTREQHVFGRGGNSSGRG--GSPAPYVDTFL 428
PS +QG Q + D E+ + G G + +G G P P D
Sbjct: 1025 QGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGA 1084
Query: 429 NAPDILPRHCTVRAGPEHPAMVRPSRGAPVTHNGCLLLREAELHPGDLLGLGEHFLFMYK 488
+ P AGP P P P +G A PG + G
Sbjct: 1085 SGP----------AGPSGPRGP-PGPVGPSGKDG------ANGIPGPIGPPGPR------ 1121
Query: 489 DPRTGGSGPARPPWLPARPGAT-PPGPGWAFSCRLCGRGLQERGEALAAYLDGREPVLRF 547
R+G +GPA PP P PG PPGPG S G G +E+G Y+ +
Sbjct: 1122 -GRSGETGPAGPPGNPGPPGPPGPPGPGIDMSA-FAGLGPREKGPDPLQYMRADQAAGGL 1179
Query: 548 RPREEE 553
R + E
Sbjct: 1180 RQHDAE 1185
Score = 37.4 bits (85), Expect = 0.068
Identities = 93/344 (27%), Positives = 111/344 (32%), Gaps = 61/344 (17%)
Query: 4 GERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPS-AASVKSSSSDTGSRSSEPLPP 62
G + E GSP P+G PR + GR P+ AA + + G P P
Sbjct: 237 GVKGESGSPGENGSPGPMG-----PRGLPGERGRTGPAGAAGARGNDGQPG-----PAGP 286
Query: 63 PPPHVELRRVG-----AVKAAGGASGSRAKRISQLFRGSGTGTTGSSG-AGGPGTPG--- 113
P P G K G +G+R +Q RG GT GS G AG G PG
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSPGPAGASGNPGTDG 345
Query: 114 --GAQRWASEKKLPELAAGVAPE-PPLATRATAPPGVLKIFG----AGLASGANYKSVLA 166
GA+ A + P PP AT P G G AG K
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 405
Query: 167 TARSTARELVAEALERYGLAGSPG-----GGPGESSCVD--AFALCDALGRP-AAAGVGS 218
A A + G G PG G PGE F D L P A G
Sbjct: 406 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERG 465
Query: 219 GEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGA 278
A GD RP PG L GR G A +G
Sbjct: 466 PSGLAGPKGANGDPGRP--------GEPGLPGARGLTGRP----------GDAGPQGKVG 507
Query: 279 PSWRPQKNRSRAASG--GA-----ALASPGPGTGSGAPAGSGGK 315
PS P ++ G GA + PGP +G P +G K
Sbjct: 508 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 551
Score = 31.6 bits (70), Expect = 3.7
Identities = 60/246 (24%), Positives = 81/246 (32%), Gaps = 33/246 (13%)
Query: 80 GASGSRAKRISQLFRGSGTGTTGSSGAGG-PGTPGGAQRWASEKKLPELAAGVAPEPPLA 138
G +G + R + +G G G G G PGTPG P PP
Sbjct: 57 GPAGEQGPRGDRGDKGE-KGAPGPRGRDGEPGTPGN------------------PGPPGP 97
Query: 139 TRATAPPGVLKIFGAGLASGANYK---SVLATARSTARELVAEALERYGLAGSPG----- 190
PPG+ F A +A G + K + L + + G AG+PG
Sbjct: 98 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP--GPAGAPGPQGFQ 155
Query: 191 GGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWAR 250
G PGE G P G + A G+ P + R PG
Sbjct: 156 GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP--GPQGARGFPGTPG 213
Query: 251 RFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPA 310
++G L+ A G A + G S P +N S G L TG A
Sbjct: 214 LPGVKGHRGYPGLD-GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAA 272
Query: 311 GSGGKE 316
G+ G +
Sbjct: 273 GARGND 278
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 46.2 bits (108), Expect = 1e-04
Identities = 77/321 (23%), Positives = 111/321 (34%), Gaps = 56/321 (17%)
Query: 40 PSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTG 99
P+ ++ +S + EP PPP +V GG+S GSGT
Sbjct: 446 PAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPSVIVHGGSSSGGG--------GSGTA 497
Query: 100 TTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA 159
+TG S A T R +++ P P P AT + V AG A
Sbjct: 498 STGGSQAASVITYTAPPRPPKKREYPP-----PPPEPAATPTSPATAVSPATAAGPAMAT 552
Query: 160 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG 219
+ R L A G+ G GGGP P AG G
Sbjct: 553 TTEEAKGRNPRAGRTLTYTAKPVGGIGG--GGGP-----------------PTGAGRGPS 593
Query: 220 EWRAE------HLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADS 273
+ +A +R+ ++ + E RPG E+ EE E E D
Sbjct: 594 QLQAPPPLCQITVRIGEEAIVKRRISET-DLRPGELSGEEMEESEEDEEEEDEEEEEEDE 652
Query: 274 EGTGAPS----WRP----QKNRSRAASGGAALASPGPGTGSGAPAG---SGGKERSENLS 322
E + A WRP + R A+GGA++ GSG P G +++ E S
Sbjct: 653 EESKAGGEDQLWRPYYSYKPKRKAGAAGGASVG------GSGLPRGRRPPRWRQKLERRS 706
Query: 323 LRRSVSELSLQGRRRRQQERR 343
+ + S GR R ++ R
Sbjct: 707 WEETPAAESPAGRARTERRHR 727
Score = 36.6 bits (83), Expect = 0.12
Identities = 66/315 (20%), Positives = 109/315 (34%), Gaps = 104/315 (33%)
Query: 38 RWPSAASVKSSSSD---TGSRSSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFR 94
++P+ SV ++SS +S PLP PP A GGA+ + A
Sbjct: 40 KFPAHRSVLAASSPFFREALLTSAPLPLPP------------ATGGAAPNPA-------- 79
Query: 95 GSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAG 154
T T SS + + + AS ++ + PP + A++PP VL++ G
Sbjct: 80 ---TTTAASSSSSSSSSSSSSSSSASSSS----SSSSSSPPPASPPASSPPRVLELPGVP 132
Query: 155 LASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAA 214
A+ ++ + + +AR PGGG ++ + AL LG
Sbjct: 133 AAAFSDVLNFIYSAR----------------LALPGGGGDGAAVAEIGALGRRLGISRLQ 176
Query: 215 GVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFG----- 269
G+G G GD+ P + ++P E+++FG
Sbjct: 177 GLGEG----------GDAWVPPTPAPMATSQP-----------------EEDSFGPGPRP 209
Query: 270 AADSEGTGAPSWRP--------------------------QKNRSRAASGGAALASPGPG 303
A + EG A + P Q + ++ G + S G G
Sbjct: 210 AGEWEGDRAEAQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLG 269
Query: 304 TGSGAPAGSGGKERS 318
G P G G + S
Sbjct: 270 AGGAGPGGPAGVDAS 284
Score = 31.6 bits (70), Expect = 3.7
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 61/211 (28%)
Query: 41 SAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAA---------------GGASGSR 85
SA+S SSSS + +S P PP +EL V A + GG G+
Sbjct: 100 SASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAA 159
Query: 86 AKRISQLFRGSGTGTTGSSGAGG----PGTPGG-----------------AQRWA---SE 121
I L R G G GG P TP A W +E
Sbjct: 160 VAEIGALGRRLGISRLQGLGEGGDAWVPPTPAPMATSQPEEDSFGPGPRPAGEWEGDRAE 219
Query: 122 KKLPELAAGVAPEP---PLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAE 178
+ P+L + P P ++ P L+ A GA+ T ST
Sbjct: 220 AQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTHEAQCRRGAS------TRGSTG------ 267
Query: 179 ALERYGLAGSPGGGPGESSCVDAFALCDALG 209
G+ G GPG + VDA AL +G
Sbjct: 268 -------LGAGGAGPGGPAGVDASALPPPVG 291
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 46.2 bits (108), Expect = 1e-04
Identities = 77/321 (23%), Positives = 111/321 (34%), Gaps = 56/321 (17%)
Query: 40 PSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTG 99
P+ ++ +S + EP PPP +V GG+S GSGT
Sbjct: 446 PAPVAMPASPPPGPPPAPEPGPPPSVITFAHPAPSVIVHGGSSSGGG--------GSGTA 497
Query: 100 TTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA 159
+TG S A T R +++ P P P AT + V AG A
Sbjct: 498 STGGSQAASVITYTAPPRPPKKREYPP-----PPPEPAATPTSPATAVSPATAAGPAMAT 552
Query: 160 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG 219
+ R L A G+ G GGGP P AG G
Sbjct: 553 TTEEAKGRNPRAGRTLTYTAKPVGGIGG--GGGP-----------------PTGAGRGPS 593
Query: 220 EWRAE------HLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADS 273
+ +A +R+ ++ + E RPG E+ EE E E D
Sbjct: 594 QLQAPPPLCQITVRIGEEAIVKRRISET-DLRPGELSGEEMEESEEDEEEEDEEEEEEDE 652
Query: 274 EGTGAPS----WRP----QKNRSRAASGGAALASPGPGTGSGAPAG---SGGKERSENLS 322
E + A WRP + R A+GGA++ GSG P G +++ E S
Sbjct: 653 EESKAGGEDQLWRPYYSYKPKRKAGAAGGASVG------GSGLPRGRRPPRWRQKLERRS 706
Query: 323 LRRSVSELSLQGRRRRQQERR 343
+ + S GR R ++ R
Sbjct: 707 WEETPAAESPAGRARTERRHR 727
Score = 36.6 bits (83), Expect = 0.12
Identities = 66/315 (20%), Positives = 109/315 (34%), Gaps = 104/315 (33%)
Query: 38 RWPSAASVKSSSSD---TGSRSSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFR 94
++P+ SV ++SS +S PLP PP A GGA+ + A
Sbjct: 40 KFPAHRSVLAASSPFFREALLTSAPLPLPP------------ATGGAAPNPA-------- 79
Query: 95 GSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAG 154
T T SS + + + AS ++ + PP + A++PP VL++ G
Sbjct: 80 ---TTTAASSSSSSSSSSSSSSSSASSSS----SSSSSSPPPASPPASSPPRVLELPGVP 132
Query: 155 LASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAA 214
A+ ++ + + +AR PGGG ++ + AL LG
Sbjct: 133 AAAFSDVLNFIYSAR----------------LALPGGGGDGAAVAEIGALGRRLGISRLQ 176
Query: 215 GVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFG----- 269
G+G G GD+ P + ++P E+++FG
Sbjct: 177 GLGEG----------GDAWVPPTPAPMATSQP-----------------EEDSFGPGPRP 209
Query: 270 AADSEGTGAPSWRP--------------------------QKNRSRAASGGAALASPGPG 303
A + EG A + P Q + ++ G + S G G
Sbjct: 210 AGEWEGDRAEAQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTHEAQCRRGASTRGSTGLG 269
Query: 304 TGSGAPAGSGGKERS 318
G P G G + S
Sbjct: 270 AGGAGPGGPAGVDAS 284
Score = 31.6 bits (70), Expect = 3.7
Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 61/211 (28%)
Query: 41 SAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAA---------------GGASGSR 85
SA+S SSSS + +S P PP +EL V A + GG G+
Sbjct: 100 SASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAA 159
Query: 86 AKRISQLFRGSGTGTTGSSGAGG----PGTPGG-----------------AQRWA---SE 121
I L R G G GG P TP A W +E
Sbjct: 160 VAEIGALGRRLGISRLQGLGEGGDAWVPPTPAPMATSQPEEDSFGPGPRPAGEWEGDRAE 219
Query: 122 KKLPELAAGVAPEP---PLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAE 178
+ P+L + P P ++ P L+ A GA+ T ST
Sbjct: 220 AQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTHEAQCRRGAS------TRGSTG------ 267
Query: 179 ALERYGLAGSPGGGPGESSCVDAFALCDALG 209
G+ G GPG + VDA AL +G
Sbjct: 268 -------LGAGGAGPGGPAGVDASALPPPVG 291
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 45.4 bits (106), Expect = 2e-04
Identities = 80/292 (27%), Positives = 102/292 (34%), Gaps = 79/292 (27%)
Query: 37 RRWPSAASVKSSSSDTGSRSSEPLPPPP-PHVELRRVGAVKAAGGASGSRAKRISQLFRG 95
R P A+ + T RS E PP P RR +A+G RA++ S+
Sbjct: 368 RGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASR--SQ 425
Query: 96 SGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGL 155
S T G + A G P K P A P PP R AP + G
Sbjct: 426 SETSLLGRASAVPSGPP----------KYPT-AEREEPRPPRPRRGPAPTLAAQAAG--- 471
Query: 156 ASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESS--------CVDAFALCDA 207
S ++S + R + A A PG GP S+ C + + C A
Sbjct: 472 -SCRRWRSTAEIDAADGRRVRPRA----PAARVPGPGPSPSAPQRRLLYGCAGSDSECSA 526
Query: 208 -----LGRPA-AAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEAR 261
LGR A GVG G G+SE A
Sbjct: 527 GRLGPLGRRGPAGGVGGG---------YGESE------------------------SSAS 553
Query: 262 RLEQEAFGAA--DSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPAG 311
E AF +A DS+G+G W Q + AASGG G G+GAPAG
Sbjct: 554 EGESPAFSSASSDSDGSGGLVWPQQLVAATAASGG--------GAGAGAPAG 597
Score = 31.2 bits (69), Expect = 4.9
Identities = 82/337 (24%), Positives = 111/337 (32%), Gaps = 41/337 (12%)
Query: 21 VGLWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKA--- 77
VG PR A SA SS++ +R+ L P P H R
Sbjct: 177 VGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPP 236
Query: 78 -----AGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVA 132
AGGA IS L R G G GG +R S ++ P A +
Sbjct: 237 TDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDA---S 293
Query: 133 PEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYG---LAGSP 189
P P A R P + ++ G + S A +R+ A +EA A SP
Sbjct: 294 PSPGSA-RPAREPSLERV-------GGHPTSPAALSRAWASSWESEAAPEPAAPPAAPSP 345
Query: 190 GGGPGESSCV------DAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWR 243
P E V A A L AA R + ERP R
Sbjct: 346 PDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGR 405
Query: 244 ARPGWARRFELRGREEAR-RLEQEAFGAADSEGTGAPSWRPQKNRSRAASGGAALASPGP 302
RR R R+ +R + E G A + +G P + P R P P
Sbjct: 406 MAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKY-PTAERE----------EPRP 454
Query: 303 GTGSGAPAGSGGKERSENLSLRRSVSEL-SLQGRRRR 338
PA + + + + RS +E+ + GRR R
Sbjct: 455 PRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVR 491
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 45.1 bits (105), Expect = 3e-04
Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 16/181 (8%)
Query: 56 SSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAG-GPGTPGG 114
+S P+ P P V +G GG +GS + G+ G++G + +G GPGT G
Sbjct: 33 ASSPVYVPTPRVPSSVLGLSYLQGGGAGSASG-------GASGGSSGGAASGAGPGTQQG 85
Query: 115 AQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARE 174
+ W+ A G A PP + + PG A A+ A ++ ++ A
Sbjct: 86 SPGWSQAG-----ADGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAYSSGGGAAG 140
Query: 175 LVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSER 234
E+YG AG G SS A+ AAA +G + + L L
Sbjct: 141 AGLAGREQYGRAGFAG---SYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRAN 197
Query: 235 P 235
P
Sbjct: 198 P 198
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 44.7 bits (104), Expect = 4e-04
Identities = 70/324 (21%), Positives = 124/324 (38%), Gaps = 65/324 (20%)
Query: 544 VLRFRPREEEALLGEIV-----RAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRL 598
+L ++ +E+ L+ ++ R A +L P PA +L +CV+H+ + + L
Sbjct: 1449 MLEYKKEDEQKLVKNLILELKPRGVAV---NLIPGLPAYILFMCVRHADYLNDDQKVRSL 1505
Query: 599 LGRLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLS 658
L IK+ +K+ GD + + W++NT L
Sbjct: 1506 LTSTINSIKKV----LKKRGD----------------------DFETVSFWLSNTCRFLH 1539
Query: 659 FVQEKVLE---MEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTL 715
+++ E M+ +++ + +L + L D I +QQ V L L +
Sbjct: 1540 CLKQYSGEEGFMKHNTSRQNEHCLTNFDLAEYRQVLSDLAIQI-YQQLVRVLENILQPMI 1598
Query: 716 PALLDSNPFTAGAELPGPGAELGAMPPGLRP---------TLGVFQAALELTS------Q 760
+ + + G G P GLR T + +L S Q
Sbjct: 1599 VSGMLEHETIQGVS--------GVKPTGLRKRTSSIADEGTYTLDSILRQLNSFHSVMCQ 1650
Query: 761 CELHPDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAG 820
+ P+L+ Q +F+ A LN+L+ R + WS+ +QIR N+ + +WL+
Sbjct: 1651 HGMDPELIKQVVKQMFYIIGAITLNNLLLR---KDMCSWSKGMQIRYNVSQLEEWLRDKN 1707
Query: 821 L-GDIATEFFRKLSMAVNLLCVPR 843
L A E L A LL V +
Sbjct: 1708 LMNSGAKETLEPLIQAAQLLQVKK 1731
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 44.7 bits (104), Expect = 4e-04
Identities = 70/324 (21%), Positives = 124/324 (38%), Gaps = 65/324 (20%)
Query: 544 VLRFRPREEEALLGEIV-----RAAAAGSGDLPPLGPATLLALCVQHSARELELGHLPRL 598
+L ++ +E+ L+ ++ R A +L P PA +L +CV+H+ + + L
Sbjct: 1476 MLEYKKEDEQKLVKNLILELKPRGVAV---NLIPGLPAYILFMCVRHADYLNDDQKVRSL 1532
Query: 599 LGRLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLMLWMANTTELLS 658
L IK+ +K+ GD + + W++NT L
Sbjct: 1533 LTSTINSIKKV----LKKRGD----------------------DFETVSFWLSNTCRFLH 1566
Query: 659 FVQEKVLE---MEKEADQEDPQLCNDLELCDEAMALLDEVIMCTFQQSVYYLTKTLYSTL 715
+++ E M+ +++ + +L + L D I +QQ V L L +
Sbjct: 1567 CLKQYSGEEGFMKHNTSRQNEHCLTNFDLAEYRQVLSDLAIQI-YQQLVRVLENILQPMI 1625
Query: 716 PALLDSNPFTAGAELPGPGAELGAMPPGLRP---------TLGVFQAALELTS------Q 760
+ + + G G P GLR T + +L S Q
Sbjct: 1626 VSGMLEHETIQGVS--------GVKPTGLRKRTSSIADEGTYTLDSILRQLNSFHSVMCQ 1677
Query: 761 CELHPDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAG 820
+ P+L+ Q +F+ A LN+L+ R + WS+ +QIR N+ + +WL+
Sbjct: 1678 HGMDPELIKQVVKQMFYIIGAITLNNLLLR---KDMCSWSKGMQIRYNVSQLEEWLRDKN 1734
Query: 821 L-GDIATEFFRKLSMAVNLLCVPR 843
L A E L A LL V +
Sbjct: 1735 LMNSGAKETLEPLIQAAQLLQVKK 1758
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 43.9 bits (102), Expect = 7e-04
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 758 TSQCE--LHPDLVSQTFGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDW 815
T C+ L P+++ Q F LF+ NA LN+L+ R + WS +Q+R N+ + +W
Sbjct: 1666 TVMCDQGLDPEIILQVFKQLFYMINAVTLNNLLLR---KDVCSWSTGMQLRYNISQLEEW 1722
Query: 816 LQGAGLGDI-ATEFFRKLSMAVNLL 839
L+G L A + L A LL
Sbjct: 1723 LRGRNLHQSGAVQTMEPLIQAAQLL 1747
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 43.5 bits (101), Expect = 0.001
Identities = 90/357 (25%), Positives = 116/357 (32%), Gaps = 89/357 (24%)
Query: 61 PPPPPHVELRRVGAVK---AAGGASGSRAKRISQLFRGSGTGTTG--------------- 102
PPPPP EL++ + A G A+ + A ++ +G + G
Sbjct: 16 PPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQD 75
Query: 103 ---SSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA 159
S+G GG G G +E L P P L T PPG G G G
Sbjct: 76 GAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG-----GGG---GG 127
Query: 160 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG 219
+ V A S A L A YG G P A A +
Sbjct: 128 SSDGVGAPPHSAAAALPPPA---YGFGQPYGRSPS-----------------AVAAAAAA 167
Query: 220 EWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAP 279
+ +H G + P L G LE A +S G P
Sbjct: 168 VFHQQH----GGQQSPGLAALQSGGGGG---------------LEPYAGPQQNSHDHGFP 208
Query: 280 -----SWRPQKNRSRAASGGAALASPGPGT-GSGAPAGSGGK-ERSENLSLRRSVSELSL 332
S+ P ++ + AL+SP GT GSGA A +G K S + S S S +
Sbjct: 209 NHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFA- 267
Query: 333 QGRRRRQQERRQQALSMAPGAADAQIGTADPGDFDQLTQCLIQAPSNRPYFLLLQGY 389
Q+R P AA GT P L Q L S R Y QGY
Sbjct: 268 -------QQRFGAMGGGGPSAAGG--GTPQPTATPTLNQLLTSPSSARGY----QGY 311
Score = 30.8 bits (68), Expect = 6.4
Identities = 56/242 (23%), Positives = 86/242 (35%), Gaps = 53/242 (21%)
Query: 110 GTPG-GAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATA 168
GTPG GA A K P +A + ++ ++ G G S A + TA
Sbjct: 237 GTPGSGAAAAAGSKPPPSSSASAS-----SSSSSFAQQRFGAMGGGGPSAAGGGTPQPTA 291
Query: 169 RSTARELVAEALERYGLAGSPG----GGPGESSC----VDAFALC---DALGRPAAAGVG 217
T +L+ G G PG GGP + D + C A AAA G
Sbjct: 292 TPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASG 351
Query: 218 SGEWRAEHLRV----LGDSERPLL--------VQELWRARP---GWARRFELRGREEARR 262
+ R+ H + G +PL + ++ + RP G +
Sbjct: 352 GAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYS--------- 402
Query: 263 LEQEAFGAADSEGTGAP-----SWRPQK------NRSRAASGGAALASPGPGTGSGAPAG 311
+Q+ + +G G P S PQ+ R+++A GG + P G P+G
Sbjct: 403 -QQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSG 461
Query: 312 SG 313
G
Sbjct: 462 YG 463
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 43.5 bits (101), Expect = 0.001
Identities = 90/357 (25%), Positives = 116/357 (32%), Gaps = 89/357 (24%)
Query: 61 PPPPPHVELRRVGAVK---AAGGASGSRAKRISQLFRGSGTGTTG--------------- 102
PPPPP EL++ + A G A+ + A ++ +G + G
Sbjct: 16 PPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQD 75
Query: 103 ---SSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGA 159
S+G GG G G +E L P P L T PPG G G G
Sbjct: 76 GAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG-----GGG---GG 127
Query: 160 NYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSG 219
+ V A S A L A YG G P A A +
Sbjct: 128 SSDGVGAPPHSAAAALPPPA---YGFGQPYGRSPS-----------------AVAAAAAA 167
Query: 220 EWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAP 279
+ +H G + P L G LE A +S G P
Sbjct: 168 VFHQQH----GGQQSPGLAALQSGGGGG---------------LEPYAGPQQNSHDHGFP 208
Query: 280 -----SWRPQKNRSRAASGGAALASPGPGT-GSGAPAGSGGK-ERSENLSLRRSVSELSL 332
S+ P ++ + AL+SP GT GSGA A +G K S + S S S +
Sbjct: 209 NHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFA- 267
Query: 333 QGRRRRQQERRQQALSMAPGAADAQIGTADPGDFDQLTQCLIQAPSNRPYFLLLQGY 389
Q+R P AA GT P L Q L S R Y QGY
Sbjct: 268 -------QQRFGAMGGGGPSAAGG--GTPQPTATPTLNQLLTSPSSARGY----QGY 311
Score = 30.8 bits (68), Expect = 6.4
Identities = 56/242 (23%), Positives = 86/242 (35%), Gaps = 53/242 (21%)
Query: 110 GTPG-GAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYKSVLATA 168
GTPG GA A K P +A + ++ ++ G G S A + TA
Sbjct: 237 GTPGSGAAAAAGSKPPPSSSASAS-----SSSSSFAQQRFGAMGGGGPSAAGGGTPQPTA 291
Query: 169 RSTARELVAEALERYGLAGSPG----GGPGESSC----VDAFALC---DALGRPAAAGVG 217
T +L+ G G PG GGP + D + C A AAA G
Sbjct: 292 TPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASG 351
Query: 218 SGEWRAEHLRV----LGDSERPLL--------VQELWRARP---GWARRFELRGREEARR 262
+ R+ H + G +PL + ++ + RP G +
Sbjct: 352 GAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYS--------- 402
Query: 263 LEQEAFGAADSEGTGAP-----SWRPQK------NRSRAASGGAALASPGPGTGSGAPAG 311
+Q+ + +G G P S PQ+ R+++A GG + P G P+G
Sbjct: 403 -QQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSG 461
Query: 312 SG 313
G
Sbjct: 462 YG 463
>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
Length = 1538
Score = 43.1 bits (100), Expect = 0.001
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 41 SAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGAS-----------GSRAKRI 89
SA S SSSS T SS PP + L R+ + + G++ SRAK +
Sbjct: 609 SAKSKVSSSSGTTPFSSAAALPPGSYASLGRIRTRRQSSGSATNVASTPDNRGRSRAKVV 668
Query: 90 SQLFRG-----SGTGTTGSS-----GAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLAT 139
SQ R +G G+ SS G+G G GG+ R E + + P +
Sbjct: 669 SQSQRSRSANPAGAGSRSSSPGKLLGSGYGGLTGGSSRGPPVTPSSEKRSKI-PRSQGCS 727
Query: 140 RATAPPGV-----LKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPG 194
R T+P + +I ++ G + + ++R T+ L+R+GL G PG PG
Sbjct: 728 RETSPNRIGLARSSRIPRPSMSQGCSRDTSRESSRDTSPARGFPPLDRFGL-GQPGRIPG 786
Query: 195 ESSCVDAF--------ALCDALGRP 211
+ + A+ DAL +P
Sbjct: 787 SVNAMRVLSTSTDLEAAVADALKKP 811
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 42.4 bits (98), Expect = 0.002
Identities = 87/325 (26%), Positives = 118/325 (36%), Gaps = 69/325 (21%)
Query: 40 PSAASVKSSSSDTGSRSSEPLPPPPPHVELR----RVGAVKAAGGASGSRAKRISQLFRG 95
P+ +S SS +GS PPPP L+ R G+ + G+ S + RG
Sbjct: 3 PALGHPRSVSSASGS-----FPPPPAAARLQPLFLRGGSFRGRRGSGDSSTSTSTS--RG 55
Query: 96 SGTGTTGSSGAGGPGTPG---GAQRWASEKKL----PELAAGVAPEPPLATRATAPPGVL 148
G G G GG G+P GA+R ++ L P + PP A A P +
Sbjct: 56 GGGGRRG----GGGGSPSSSTGAEREDDDESLSVSKPLVPNAALLGPPAQVGAPAGPAPV 111
Query: 149 KIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPG-------GGPGE---SSC 198
F + A+ ++ + ++ TA + A G G PG GG G +SC
Sbjct: 112 -AFSSSAATSSSTSTPTSSCSMTAADFGGGAAA--GAVGGPGSRSAGGAGGTGTGSGASC 168
Query: 199 VDAFALCDALGRPAAAGVGSG-------EWRAEHLRVL------GDSERPLL-VQEL--- 241
C RP G G W + L V+ G + L+ V +L
Sbjct: 169 CPCCCCCGCPDRPGRRGRRRGCAPSPRCRWGYQALSVVLLLAQGGLLDLYLIAVTDLYWC 228
Query: 242 -WRARP-----GWARRF--ELRGR-----EEARRLEQEAFGAADSEGTGAPSWRPQKNRS 288
W A GWA F RGR A AA APS ++
Sbjct: 229 SWIATDLVVVVGWAIFFAKNSRGRRGGAASGAHNHHLHHHHAAPPLHLPAPSAATAGAKA 288
Query: 289 RAASGGAALASPGPGTGSGAPAGSG 313
R A GGA G G G GA A +G
Sbjct: 289 RGARGGAG----GAGGGLGAAAAAG 309
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 42.4 bits (98), Expect = 0.002
Identities = 53/198 (26%), Positives = 72/198 (36%), Gaps = 55/198 (27%)
Query: 25 INSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGG-ASG 83
I P+ Q K G W S A+ S +PPPP +G +KA GG A G
Sbjct: 21 IGGPKSQWGKSG--WFSIAA------------SWRVPPPPA------MGVLKARGGRAWG 60
Query: 84 SRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPE--------- 134
R L RG + GGP + GG + W S LP G +P+
Sbjct: 61 GRGAGSQSLPRGGASARCD----GGPKSQGGKRGWLSVPSLPR--GGASPQCDGGPKSQG 114
Query: 135 ------PPLATRATAPPGVLKIFGAGLASGANYKSVLATARST-------------AREL 175
A+R APPG + I A G +S L + R +
Sbjct: 115 GKSGWLSVPASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGV 174
Query: 176 VAEALERYGLAGSPGGGP 193
+E+ R+G + GGP
Sbjct: 175 GSESPPRWGCLPTCDGGP 192
Score = 32.0 bits (71), Expect = 2.9
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 24 WINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLP-----PPPPHVELRRVGAVKAA 78
W++ P A G P A + + G+ S PLP PPPP +G +A
Sbjct: 119 WLSVP----ASRGVAPPGAMGILRARGGRGTGSQSPLPASLGVPPPP-----AMGVQRAR 169
Query: 79 GGASGSRAKRISQLFRGSGTGTTGSSGA-----GGPGTPGGAQRWAS 120
GG RG G+ + G GGP + GG + W S
Sbjct: 170 GG-------------RGVGSESPPRWGCLPTCDGGPKSQGGKRGWLS 203
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 42.4 bits (98), Expect = 0.002
Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 41 SAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGASGS----RAKRISQLFRGS 96
+AA+ S +R LP P H++ G AGGA +A S + GS
Sbjct: 179 AAAAASSPVYVPTTRVGSMLPGLPYHLQGSGSGPANHAGGAGAHPGWPQASADSPPY-GS 237
Query: 97 GTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLA 156
G G G GA GPG G A S + +P PP+A A PG G+G A
Sbjct: 238 GGGAAGG-GAAGPGGAGSAAAHVSAR------FPYSPSPPMANGAAREPGGYAAAGSGGA 290
Query: 157 SGAN 160
G +
Sbjct: 291 GGVS 294
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 42.4 bits (98), Expect = 0.002
Identities = 78/312 (25%), Positives = 110/312 (35%), Gaps = 66/312 (21%)
Query: 27 SPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAG--GASGS 84
S + +L W ++ + + G+ E P PPPH LR G +AAG G
Sbjct: 243 SDKSATDELSHAWEDVKAMFNGGTRCGA---EMAPGPPPHKSLR-CGEDEAAGPPGPPPP 298
Query: 85 RAKRISQLFRGSGTG-TTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATA 143
+R G G TG+SG GPG PGG S +P + G +
Sbjct: 299 HPQR--------GLGLATGASGPAGPGGPGGGAGVRSYPVIPVPSKGFG-----LLQKLP 345
Query: 144 PPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFA 203
PP +G A G L + + AG P GGPG S
Sbjct: 346 PPLFPHPYGFPTAFG----------------LCPKKDDPVLGAGEPKGGPGTGSG----- 384
Query: 204 LCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRL 263
G A G G+G A HL G P W +P A + +A +
Sbjct: 385 -----GGGAGTGGGAGGPGASHLPP-GAGAGPGGGAMFWGHQPSGAAK-------DAAAV 431
Query: 264 EQEAFGAA----------DSEGTGAPSWRPQKNRSR--AASGGAALASPGPGTGSGAPAG 311
A A + PS+ +++++ AA+ AA A+ GSGAP
Sbjct: 432 AAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEP 491
Query: 312 SGGKERSENLSL 323
G E ++ L
Sbjct: 492 LDGAEPAKESGL 503
Score = 32.3 bits (72), Expect = 2.2
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 81 ASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQR-----WASEKKLPE-LAAGVAPE 134
A+ S+AK ++ + ++G+G P GA+ +E++ P L+ G E
Sbjct: 461 AAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDE 520
Query: 135 --------PPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLA 186
PPLA PP + G+ +++ ++ V+ S A+ L A E YG
Sbjct: 521 DGTDEALPPPLAPLPPPPPPPARK-GSYVSA---FRPVVKDTESIAK-LYGSAREAYGAG 575
Query: 187 GSPGGGPGESS 197
+ G GPG S
Sbjct: 576 PARGPGPGAGS 586
Score = 31.6 bits (70), Expect = 3.7
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 59 PLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRW 118
PLPPPPP R G+ +A + I++L+ GS G+ A GPG G+ +
Sbjct: 533 PLPPPPP--PPARKGSYVSAFRPVVKDTESIAKLY-GSAREAYGAGPARGPGPGAGSGGY 589
Query: 119 ASEKKLPELAAGVAPEPPLATRATAP 144
S L E ++ P A P
Sbjct: 590 VSPDFLSEGSSSYNSASPDVDTADEP 615
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 41.2 bits (95), Expect = 0.005
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 270 AADSEGTGAPSWRPQKNRSRAASGGAALASPGPGTGSGAPAGSGGKERS--ENLSLRRSV 327
A D G G + R RS A GG G G G G+ G GG ER ++RR +
Sbjct: 153 ALDGPGAGGGAERGGSGRSSAGGGGGG---GGGGGGRGSRRGRGGGERGGPRAQAVRRRL 209
Query: 328 SELSLQGRRRR-QQERRQQALSMA 350
S L +GRRRR ++ RR Q S A
Sbjct: 210 SALRGRGRRRRLKRLRRAQETSGA 233
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 39.7 bits (91), Expect = 0.014
Identities = 52/197 (26%), Positives = 65/197 (32%), Gaps = 29/197 (14%)
Query: 38 RWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRR----------------VGAVKAAGGA 81
RWP S S S S + LP PH LR G+ GG
Sbjct: 6 RWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGD 65
Query: 82 SGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRA 141
K S G GT S A G G G+ R + + P A PP + R
Sbjct: 66 PACLLKSCS-----PGLGTRSSPAAAGGGATSGSPRVVTPE--PAAPATQVSWPPSSARL 118
Query: 142 TAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDA 201
A P A + SV + ++ A A A G +SC A
Sbjct: 119 LAGPA-----SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRA 173
Query: 202 FALCDALGRPAAAGVGS 218
C AL RP++ G GS
Sbjct: 174 LLNC-ALPRPSSTGYGS 189
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 39.7 bits (91), Expect = 0.014
Identities = 52/197 (26%), Positives = 65/197 (32%), Gaps = 29/197 (14%)
Query: 38 RWPSAASVKSSSSDTGSRSSEPLPPPPPHVELRR----------------VGAVKAAGGA 81
RWP S S S S + LP PH LR G+ GG
Sbjct: 6 RWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGD 65
Query: 82 SGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRA 141
K S G GT S A G G G+ R + + P A PP + R
Sbjct: 66 PACLLKSCS-----PGLGTRSSPAAAGGGATSGSPRVVTPE--PAAPATQVSWPPSSARL 118
Query: 142 TAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDA 201
A P A + SV + ++ A A A G +SC A
Sbjct: 119 LAGPA-----SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRA 173
Query: 202 FALCDALGRPAAAGVGS 218
C AL RP++ G GS
Sbjct: 174 LLNC-ALPRPSSTGYGS 189
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 39.7 bits (91), Expect = 0.014
Identities = 93/388 (23%), Positives = 129/388 (33%), Gaps = 74/388 (19%)
Query: 55 RSSEPLPPPPPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGTGTTGSSGAGGPGTPGG 114
R P PPPPP + + ++ A+ + + QL+ SG A GP P
Sbjct: 228 RPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSG-------AAPGPPPP-- 278
Query: 115 AQRWASEKKLPELAAGVAP-EPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTAR 173
E+ LP + + P + + PP L+ G +Y S+ A
Sbjct: 279 ------ERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACS 332
Query: 174 ELVAEALERYGLAGSPGGGPGE-----SSCVDAFALCDALGRPAAAGVGSGEWRAEHLRV 228
L G P G GE S A A A G AA G G+G
Sbjct: 333 PLG---------GGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGG------- 376
Query: 229 LGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWRPQKNRS 288
G RP++ PG+ + + +GAA T P R
Sbjct: 377 -GGGYRPII------QSPGY-------------KTGKGGYGAAAGGATRPPPPRSTATPK 416
Query: 289 RAASGGAALASPGPGTGSGAPAGSGGKERSENLSLRRSVSELSLQGRRRRQQERRQQALS 348
+ GG A A+ G SGA G+GG+ S + QG Q + +A S
Sbjct: 417 CQSLGGPA-AAYATGKASGA-GGAGGQAYSPGQPQGLLGPQAYGQGFGGGQAQDLSKAPS 474
Query: 349 MAPGAADAQIGTADPG-------DFDQLTQCLIQAPSNRPY---FLLLQGYQDAQDFVVY 398
+ G G PG DQL Q + PY QG A + Y
Sbjct: 475 YSGGPPQPPSGPPPPGLATCQSYSPDQL-QGQLYGVQGEPYPGPAAHSQGLPTASPSLSY 533
Query: 399 VMTREQHVFGRGG----NSSGRGGSPAP 422
+ G GG +S G GG +P
Sbjct: 534 STGHSPALSGHGGGWGPSSLGGGGEASP 561
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 39.3 bits (90), Expect = 0.018
Identities = 63/252 (25%), Positives = 95/252 (37%), Gaps = 59/252 (23%)
Query: 103 SSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGVLKIFGAGLASGANYK 162
++G GPG P GA A + ELAA A P L+ A +KI G+G
Sbjct: 12 AAGRAGPGAPLGA---ALARTPVELAAESAA-PALSAAAAG----VKILGSG-------- 55
Query: 163 SVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWR 222
+ R+ A ++ L G G G+ + AAG G E R
Sbjct: 56 -----DKKLRRQKAAAGGKKARLRGQKGAVAGKEA---------RQHWQKAAGAGGAENR 101
Query: 223 AEHLRVLGDSERPLLVQELWRARPGWARRFELRGREEARRLEQEAFGAADSEGTGAPSWR 282
G E+ +A + RGR+ RR ++ A + G+ P WR
Sbjct: 102 -------GGGEQ--------KAAAAGTKSLGGRGRKPRRRGQKAA-----ATGSKKPRWR 141
Query: 283 PQKN-----RSRAASGGAALASPGPGTGSGAP----AGSGGKERSENLSLRRSVSELSLQ 333
QK+ ++R A A A+ G + G A +G K RS RR +
Sbjct: 142 AQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDE 201
Query: 334 GRRRRQQERRQQ 345
++ RQ+E + +
Sbjct: 202 DKKGRQREAKSR 213
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 39.3 bits (90), Expect = 0.018
Identities = 51/184 (27%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 40 PSAASVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGG---------ASGSRAKRIS 90
P + VK S S G S L P V L R+ A S + +
Sbjct: 463 PHVSGVKRSRSGEGEVSG--LMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLI 520
Query: 91 QLFRGSGTGTTGSSG---AGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAPPGV 147
+ RG+ TG G AG PG P A +++ E A G PP AT V
Sbjct: 521 VIERGAAAAATGQPGTAPAGTPGAPPLAGMAIVKEEETEAAIGA---PPTATEGPETKPV 577
Query: 148 LKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGGPGESSCVDAFALCDA 207
L G GA + + + ST+ L A E +PGGGPG + D+ +C
Sbjct: 578 LMALAEG--PGAEGPRLASPSGSTSSGLEVVAPEG---TSAPGGGPG--TLDDSATICRV 630
Query: 208 LGRP 211
+P
Sbjct: 631 CQKP 634
Score = 30.8 bits (68), Expect = 6.4
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 290 AASGGAALASPGPGTGSGAPAGSGGKERSENLSLRRSVSELSLQG--------------- 334
AA+ AA SPGPG GS +GG++RS S S S +
Sbjct: 10 AAAASAASGSPGPGEGS-----AGGEKRSTAPSAAASASASAAASSPAGGGAEALELLEH 64
Query: 335 ----RRRRQQERRQQALSMAPGAADAQIGTADP 363
R R + ER + L A A +G A P
Sbjct: 65 CGVCRERLRPEREPRLLPCLHSACSACLGPAAP 97
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 39.3 bits (90), Expect = 0.018
Identities = 48/157 (30%), Positives = 58/157 (36%), Gaps = 31/157 (19%)
Query: 47 SSSSDTGSRSSEPLPPPPPHVELR--RVGAVKAAGGASGSRAKRISQLFRGSGTGTTG-- 102
SS S GS SS P R A KA+GGA R RGSG+G G
Sbjct: 9 SSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGAKHPVPARARDKPRGSGSGGGGHR 68
Query: 103 ------------------SSGAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATAP 144
SGAGG G G A + A+ + P PP P
Sbjct: 69 DGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPGASGMSPRASPLPPPPP-------P 121
Query: 145 PGVLKIFGAGLASGANYKSVLATARSTARELVAEALE 181
PG A+ YK++L ++ S A L AE LE
Sbjct: 122 PGAEPACPGSSAAAPEYKTLLISSLSPA--LPAEHLE 156
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 38.9 bits (89), Expect = 0.023
Identities = 51/189 (26%), Positives = 65/189 (34%), Gaps = 32/189 (16%)
Query: 34 KLGRRWPSAA------------SVKSSSSDTGSRSSEPLPPPPPHVELRRVGAVKAAGGA 81
K G R PSAA + SSSS GSR P K GG
Sbjct: 189 KAGFRVPSAACPPFPPHGAPVSASSSSSSPGGSRGGSP-----------HHSDCKNGGGV 237
Query: 82 SGSRAKRISQLFRGSGTGTTGSSGAGG-PGTPGGAQRWASEKKL--PELAAG------VA 132
G + Q + S S G GG PG GGA+ AS +K P G V+
Sbjct: 238 GGGELDKKDQEPKPSPEPAAVSRGGGGEPGAHGGAESGASGRKSEPPSALVGAGHVAPVS 297
Query: 133 PEPPLATRATAPPGVLKIFGAGLASGANYKSVLATARSTARELVAEALERYGLAGSPGGG 192
P P + PP + G+ + + A Y S ++ + GL PG
Sbjct: 298 PYKPGHSVFPLPPSSIGYHGSIVGAYAGYPSQFVPGLDPSKSGLVGGQLSGGLGLPPGKP 357
Query: 193 PGESSCVDA 201
P S A
Sbjct: 358 PSSSPLTGA 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,715,343
Number of Sequences: 37866
Number of extensions: 2797710
Number of successful extensions: 21396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 434
Number of HSP's that attempted gapping in prelim test: 18698
Number of HSP's gapped (non-prelim): 2818
length of query: 963
length of database: 18,247,518
effective HSP length: 112
effective length of query: 851
effective length of database: 14,006,526
effective search space: 11919553626
effective search space used: 11919553626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.