Guide to the Human Genome
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Name: LANCL3 Sequence: fasta or formatted (388aa) NCBI GI: 38348330
Description:

LanC lantibiotic synthetase component C-like 3

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         45           2
 C cysteine            3.9         15           1
 D aspartate           3.1         12           2
 E glutamate           6.2         24           2
 F phenylalanine       3.4         13           1
 G glycine             9.0         35           3
 H histidine           2.6         10           1
 I isoleucine          3.6         14           1
 K lysine              4.9         19           2
 L leucine            12.6         49           3
 M methionine          1.5          6           1
 N asparagine          1.5          6           1
 P proline             4.4         17           2
 Q glutamine           4.9         19           1
 R arginine            5.2         20           1
 S serine              5.4         21           2
 T threonine           3.6         14           1
 V valine              5.4         21           1
 W tryptophan          1.3          5           1
 Y tyrosine            5.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LanC lantibiotic synthetase component C-like 3 [Homo... 
LANCL2                0.206   LanC lantibiotic synthetase component C-like 2 
LANCL1                0.197   lanthionine synthetase C-like protein 1 
LANCL1                0.197   lanthionine synthetase C-like protein 1 
LANCL1                0.197   lanthionine synthetase C-like protein 1 
SLC12A6               0.006   solute carrier family 12, member 6 isoform e 
SLC12A6               0.006   solute carrier family 12, member 6 isoform d 
SLC12A6               0.006   solute carrier family 12, member 6 isoform c 
SLC12A6               0.006   solute carrier family 12, member 6 isoform c 
SLC12A6               0.006   solute carrier family 12, member 6 isoform b 
SLC12A6               0.006   solute carrier family 12, member 6 isoform a 
GLDN                  0.006   gliomedin 
LOC100129810          0.006   PREDICTED: hypothetical protein 
LOC100129810          0.006   PREDICTED: hypothetical protein 
GPSM1                 0.005   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM1                 0.005   G-protein signaling modulator 1 (AGS3-like, C. eleg...
C19orf2               0.005   RPB5-mediating protein isoform b 
C19orf2               0.005   RPB5-mediating protein isoform a 
MED12                 0.005   mediator complex subunit 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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