RABGGTA 26173

Name: RABGGTA	Sequence: fasta or formatted (567aa)		NCBI GI: 33469951
Description: Rab geranylgeranyltransferase alpha		Referenced in: Prenylation and Related Modifications Rab
Other entries for this name: alt mRNA [567aa] Rab geranylgeranyltransferase alpha
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 38 2 C cysteine 3.4 19 1 D aspartate 4.9 28 2 E glutamate 8.6 49 2 F phenylalanine 2.8 16 2 G glycine 3.0 17 1 H histidine 2.6 15 2 I isoleucine 1.6 9 2 K lysine 3.5 20 1 L leucine 18.3 104 3 M methionine 1.1 6 1 N asparagine 3.5 20 2 P proline 5.5 31 2 Q glutamine 6.2 35 2 R arginine 7.1 40 2 S serine 6.2 35 2 T threonine 4.8 27 2 V valine 6.2 35 1 W tryptophan 2.3 13 1 Y tyrosine 1.8 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Rab geranylgeranyltransferase alpha RABGGTA 1.000 Rab geranylgeranyltransferase alpha FNTA 0.049 farnesyltransferase, CAAX box, alpha isoform b [Homo... FNTA 0.049 farnesyltransferase, CAAX box, alpha isoform a FNTA 0.042 farnesyltransferase, CAAX box, alpha isoform c [Homo... NISCH 0.032 nischarin LRRC50 0.031 leucine rich repeat containing 50 PTAR1 0.028 protein prenyltransferase alpha subunit repeat cont... LRDD 0.027 leucine rich repeat and death domain containing prot... LRDD 0.027 leucine rich repeat and death domain containing prot... LRDD 0.027 leucine rich repeat and death domain containing prot... MFHAS1 0.027 malignant fibrous histiocytoma amplified sequence 1... LOC100129335 0.026 PREDICTED: Leucine-rich repeat-containing protein E... LOC100129335 0.026 PREDICTED: Leucine-rich repeat-containing protein E... LOC100129335 0.026 PREDICTED: Leucine-rich repeat-containing protein E... LOC100129335 0.026 PREDICTED: Leucine-rich repeat-containing protein E... LRRC57 0.024 leucine rich repeat containing 57 LRRC1 0.024 leucine rich repeat containing 1 CHADL 0.022 chondroadherin-like PPP1R7 0.022 protein phosphatase 1, regulatory subunit 7 LRRC40 0.022 leucine rich repeat containing 40 GP1BA 0.022 platelet glycoprotein Ib alpha polypeptide precurso... LRRC7 0.021 leucine rich repeat containing 7 STK11IP 0.021 LKB1 interacting protein SHOC2 0.021 soc-2 suppressor of clear homolog RSU1 0.020 ras suppressor protein 1 isoform 1 LRRC30 0.020 leucine rich repeat containing 30 LRRC32 0.020 leucine rich repeat containing 32 precursor LRRC32 0.020 leucine rich repeat containing 32 precursor PODN 0.020 podocan Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.