Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GDPD4 Sequence: fasta or formatted (520aa) NCBI GI: 33457301
Description:

glycerophosphodiester phosphodiesterase domain containing 4

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         25           2
 C cysteine            1.7          9           1
 D aspartate           3.3         17           1
 E glutamate           6.0         31           2
 F phenylalanine       7.3         38           2
 G glycine             4.0         21           1
 H histidine           3.8         20           1
 I isoleucine          7.3         38           2
 K lysine              5.0         26           2
 L leucine            13.8         72           5
 M methionine          2.7         14           2
 N asparagine          3.8         20           2
 P proline             5.2         27           3
 Q glutamine           2.3         12           1
 R arginine            5.6         29           2
 S serine              5.8         30           2
 T threonine           5.0         26           2
 V valine              6.5         34           2
 W tryptophan          2.9         15           1
 Y tyrosine            3.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycerophosphodiester phosphodiesterase domain conta... 
GDPD5                 0.321   glycerophosphodiester phosphodiesterase domain cont...
GDPD2                 0.285   osteoblast differentiation promoting factor protein ...
GDE1                  0.027   glycerophosphodiester phosphodiesterase 1 
GDPD1                 0.022   glycerophosphodiester phosphodiesterase domain conta...
RP5-1022P6.2          0.016   hypothetical protein LOC56261 
TAS2R10               0.012   taste receptor, type 2, member 10 
DRD2                  0.008   dopamine receptor D2 isoform short 
DRD2                  0.008   dopamine receptor D2 isoform long 
ABCA6                 0.007   ATP-binding cassette, sub-family A, member 6 
GDPD3                 0.006   glycerophosphodiester phosphodiesterase domain cont...
GPR172B               0.005   G protein-coupled receptor 172B 
GPR172B               0.005   G protein-coupled receptor 172B 
PIGU                  0.005   phosphatidylinositol glycan anchor biosynthesis, cla...
LOC100130458          0.005   PREDICTED: hypothetical protein 
LOC100130458          0.005   PREDICTED: hypothetical protein 
LOC100130458          0.005   PREDICTED: hypothetical protein 
ZNF267                0.005   zinc finger protein 267 
TAS2R19               0.004   taste receptor, type 2, member 19 
MFSD1                 0.004   major facilitator superfamily domain containing 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press