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Search of human proteins with 123317872
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens] 676 0.0
gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens] 586 e-167
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 326 1e-89
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 236 2e-62
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 91 1e-18
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 70 2e-12
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 70 2e-12
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 70 2e-12
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 30 2.9
gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens] 30 3.7
gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens] 30 3.7
gi|187936949 solute carrier family 39 (zinc transporter), member... 29 4.9
gi|55741750 solute carrier family 39 (zinc transporter), member ... 29 4.9
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 29 6.4
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 28 8.4
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 28 8.4
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 28 8.4
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 28 8.4
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 28 8.4
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 28 8.4
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 28 8.4
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 28 8.4
>gi|123317872 germ cell associated 1 isoform 3 [Homo sapiens]
Length = 321
Score = 676 bits (1743), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK
Sbjct: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
Query: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE
Sbjct: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
Query: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLR 180
PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLR
Sbjct: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLR 180
Query: 181 FGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQ 240
FGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQ
Sbjct: 181 FGGKRLMEKASLPSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQ 240
Query: 241 TERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLH 300
TERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLH
Sbjct: 241 TERLCCCFLCPVRSPGDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLH 300
Query: 301 GVGCHHLQHVHQDGAGVQVQA 321
GVGCHHLQHVHQDGAGVQVQA
Sbjct: 301 GVGCHHLQHVHQDGAGVQVQA 321
>gi|123317847 germ cell associated 1 isoform 1 [Homo sapiens]
Length = 285
Score = 586 bits (1510), Expect = e-167
Identities = 282/306 (92%), Positives = 283/306 (92%), Gaps = 23/306 (7%)
Query: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
Query: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
Query: 136 RSSGTAAAKGERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP 195
GERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP
Sbjct: 109 ---------GERCRSFIELTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSP 159
Query: 196 PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP 255
PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP
Sbjct: 160 PLGLCGKNPMVIPGNADHLHRTSIHQLPPATNRLATHWEPCLWAQTERLCCCFLCPVRSP 219
Query: 256 GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA 315
GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA
Sbjct: 220 GDGGPHDVFTSLPSDCQLGSRRLETTCLELWLGLLHGLALLHLLHGVGCHHLQHVHQDGA 279
Query: 316 GVQVQA 321
GVQVQA
Sbjct: 280 GVQVQA 285
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 326 bits (836), Expect = 1e-89
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK
Sbjct: 1 MSDPSQLTQNVCLTQEMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPK 60
Query: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE
Sbjct: 61 PLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEE 120
Query: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR 160
PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR
Sbjct: 121 PALLHPQSWKQFRALRSSGTAAAKGERCRSFIELTPPAKR 160
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 236 bits (603), Expect = 2e-62
Identities = 121/145 (83%), Positives = 122/145 (84%), Gaps = 23/145 (15%)
Query: 16 EMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 75
+MELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP
Sbjct: 3 KMELSKAFSGQRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMP 62
Query: 76 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRAL 135
VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP
Sbjct: 63 VSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEP-------------- 108
Query: 136 RSSGTAAAKGERCRSFIELTPPAKR 160
GERCRSFIELTPPAKR
Sbjct: 109 ---------GERCRSFIELTPPAKR 124
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 91.3 bits (225), Expect = 1e-18
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 37/149 (24%)
Query: 27 RTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTST 86
R LL+ L++L+L F+TT+ L+ +W GTQ+VPKP C +G A C + + + +
Sbjct: 8 RALLAVALNLLALLFATTAFLTTHWCQGTQRVPKPGCGQGGRANCPNSGANATANGTAAP 67
Query: 87 QEVVQ--------------YNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQF 132
Y+WETGDDRF FR+F +G+W SCEE +
Sbjct: 68 AAAAAAATASGNGPPGGALYSWETGDDRFLFRNFHTGIWYSCEEEL-------------- 113
Query: 133 RALRSSGTAAAKGERCRSFIELTPPAKRG 161
+ GE+CRSFI+L P +++G
Sbjct: 114 ---------SGLGEKCRSFIDLAPASEKG 133
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 70.5 bits (171), Expect = 2e-12
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 27/139 (19%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKRG 161
+ E+CRSF + P ++G
Sbjct: 102 GEDEKCRSFRSVVPAEEQG 120
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 70.5 bits (171), Expect = 2e-12
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 27/139 (19%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKRG 161
+ E+CRSF + P ++G
Sbjct: 102 GEDEKCRSFRSVVPAEEQG 120
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 70.5 bits (171), Expect = 2e-12
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 27/139 (19%)
Query: 26 QRTLLSAILSMLSLSFSTTSLLSNYWFVGTQKVPKPLCEK---GLAAKCFDMPVSLDGDT 82
Q+ L + L+L+FS T+++S++W GT++V KPLC+ G F S +G
Sbjct: 6 QQQALLLLPVCLALTFSLTAVVSSHWCEGTRRVVKPLCQDQPGGQHCIHFKRDNSSNGRM 65
Query: 83 NTSTQEVVQYNWETGDDRFSFRSFRSGMWLSCEETVEEPALLHPQSWKQFRALRSSGTAA 142
+ ++Q V+ Y WE GDD+F R F G+W SCEE++
Sbjct: 66 DNNSQAVL-YIWELGDDKFIQRGFHVGLWQSCEESLN----------------------- 101
Query: 143 AKGERCRSFIELTPPAKRG 161
+ E+CRSF + P ++G
Sbjct: 102 GEDEKCRSFRSVVPAEEQG 120
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 171 LQGPCHPTLRFGGKRLMEKASLPS---PPLGLCGKNPMVIPGN---ADHLHRTSIHQLPP 224
++ P P R G + +E+A+ S P LG G + P A HLH ++ L P
Sbjct: 1573 MESPSGPHRRLGSPQAIEEAASSSSAGPNLGQSGATDPIPPEGCWKAQHLHTQALTALSP 1632
Query: 225 ATNRL 229
+T+ L
Sbjct: 1633 STSGL 1637
>gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens]
Length = 659
Score = 29.6 bits (65), Expect = 3.7
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 187 MEKASL----PSPPLGLCGKNPMVIPGNADHLHRTSIHQLPPA---TNRLATHWEPCLWA 239
ME+ S+ P P + + P+ + + L + IHQL + L + PC W
Sbjct: 89 MEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKYHPCFWI 148
Query: 240 QTERLCC 246
+ LCC
Sbjct: 149 DGQYLCC 155
>gi|239757199 PREDICTED: zinc finger protein 56 [Homo sapiens]
Length = 592
Score = 29.6 bits (65), Expect = 3.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 40 SFSTTSLLSNYWFVGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQ 91
+F+ S L+NY + T + P E G+A K F + G T TS + VV+
Sbjct: 499 AFNQPSTLTNYEKIHTGQKPYKCEECGMAYKKFSSKIIHTGKTPTSVKNVVK 550
>gi|187936949 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 278 LETTCLELWLGLLHGLALLHLL-HGVGCHHLQHVHQDGAG 316
L T + L +G + G ALLHLL H G H H H G G
Sbjct: 439 LLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHG 478
>gi|55741750 solute carrier family 39 (zinc transporter), member 10
[Homo sapiens]
Length = 831
Score = 29.3 bits (64), Expect = 4.9
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 278 LETTCLELWLGLLHGLALLHLL-HGVGCHHLQHVHQDGAG 316
L T + L +G + G ALLHLL H G H H H G G
Sbjct: 439 LLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHG 478
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.9 bits (63), Expect = 6.4
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 53 VGTQKVPKPLCEKGLAAKCFDMPVSLDGDTNTSTQEVVQYNWETGDDRFSFRSFRSGMWL 112
+ Q VP C L ++ ++MP+ GD N S + DRF+ R F S WL
Sbjct: 2545 IANQAVPFSACTMLLDSEVYNMPLESQGDENKSVR-----------DRFNARQFIS--WL 2591
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 156 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 201
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 156 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 201
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 156 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 201
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 156 PPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKASLPSPP--LGLCG 201
PP RG+ G L+ +L G P G + + P PP LG CG
Sbjct: 1341 PPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 28.5 bits (62), Expect = 8.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 134 ALRSSGTAAAKGERCRSFIE--LTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKAS 191
ALRSS A KGE+ ++ I+ PP G G L L GP P
Sbjct: 199 ALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP------------PG 246
Query: 192 LPSPP 196
LP PP
Sbjct: 247 LPGPP 251
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 28.5 bits (62), Expect = 8.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 134 ALRSSGTAAAKGERCRSFIE--LTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKAS 191
ALRSS A KGE+ ++ I+ PP G G L L GP P
Sbjct: 190 ALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP------------PG 237
Query: 192 LPSPP 196
LP PP
Sbjct: 238 LPGPP 242
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 28.5 bits (62), Expect = 8.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 134 ALRSSGTAAAKGERCRSFIE--LTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKAS 191
ALRSS A KGE+ ++ I+ PP G G L L GP P
Sbjct: 228 ALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP------------PG 275
Query: 192 LPSPP 196
LP PP
Sbjct: 276 LPGPP 280
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 28.5 bits (62), Expect = 8.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 134 ALRSSGTAAAKGERCRSFIE--LTPPAKRGEKGLLEFATLQGPCHPTLRFGGKRLMEKAS 191
ALRSS A KGE+ ++ I+ PP G G L L GP P
Sbjct: 228 ALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGP------------PG 275
Query: 192 LPSPP 196
LP PP
Sbjct: 276 LPGPP 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,425,888
Number of Sequences: 37866
Number of extensions: 703301
Number of successful extensions: 1613
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 27
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.