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Search of human proteins with 31542671
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542671 liver regeneration p-53 related protein [Homo
sapiens]
(540 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542671 liver regeneration p-53 related protein [Homo sapiens] 1081 0.0
gi|21362112 limb region 1 protein [Homo sapiens] 45 2e-04
gi|169215514 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 31 2.5
gi|4885521 neuronatin isoform alpha [Homo sapiens] 31 2.5
gi|4506259 prostaglandin E receptor 4, subtype EP4 [Homo sapiens] 31 3.3
gi|169215927 PREDICTED: hypothetical protein [Homo sapiens] 31 3.3
gi|239752137 PREDICTED: hypothetical protein [Homo sapiens] 31 3.3
gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo sap... 31 3.3
gi|56790897 LMBR1 domain containing 2 [Homo sapiens] 30 4.3
gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens] 30 5.6
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 30 5.6
gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens] 30 5.6
gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens] 30 5.6
gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo s... 30 7.3
gi|21362072 hypothetical protein LOC84645 [Homo sapiens] 30 7.3
gi|194733735 transient receptor potential cation channel, subfam... 29 9.6
gi|4507687 transient receptor potential cation channel, subfamil... 29 9.6
gi|90403581 meiosis defective 1 [Homo sapiens] 29 9.6
gi|52353278 olfactory receptor, family 6, subfamily T, member 1 ... 29 9.6
>gi|31542671 liver regeneration p-53 related protein [Homo sapiens]
Length = 540
Score = 1081 bits (2796), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MATSGAASAELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALIT 60
MATSGAASAELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALIT
Sbjct: 1 MATSGAASAELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALIT 60
Query: 61 SALLPVDIFLVSYMKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVY 120
SALLPVDIFLVSYMKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVY
Sbjct: 61 SALLPVDIFLVSYMKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVY 120
Query: 121 FYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSL 180
FYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSL
Sbjct: 121 FYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSL 180
Query: 181 FEELGSSHGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSAAYERLENTED 240
FEELGSSHGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSAAYERLENTED
Sbjct: 181 FEELGSSHGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSAAYERLENTED 240
Query: 241 IEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRERHLEFIENSWWTKFCGA 300
IEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRERHLEFIENSWWTKFCGA
Sbjct: 241 IEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRERHLEFIENSWWTKFCGA 300
Query: 301 LRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLNMLLPLLQ 360
LRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLNMLLPLLQ
Sbjct: 301 LRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLNMLLPLLQ 360
Query: 361 TVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWVRLYKIRRGRTRPQALLFLCMILLLI 420
TVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWVRLYKIRRGRTRPQALLFLCMILLLI
Sbjct: 361 TVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWVRLYKIRRGRTRPQALLFLCMILLLI 420
Query: 421 VLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVPKRCDADAPEDQCTVTRT 480
VLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVPKRCDADAPEDQCTVTRT
Sbjct: 421 VLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVPKRCDADAPEDQCTVTRT 480
Query: 481 YLFLHKFWFFSAAYYFGNWAFLGVFLIGLIVSCCKGKKSVIEGVDEDSDISDDEPSVYSA 540
YLFLHKFWFFSAAYYFGNWAFLGVFLIGLIVSCCKGKKSVIEGVDEDSDISDDEPSVYSA
Sbjct: 481 YLFLHKFWFFSAAYYFGNWAFLGVFLIGLIVSCCKGKKSVIEGVDEDSDISDDEPSVYSA 540
>gi|21362112 limb region 1 protein [Homo sapiens]
Length = 490
Score = 44.7 bits (104), Expect = 2e-04
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 10 ELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVV----STITAIFSLAIALITSALLP 65
E I + +F +L + Y RK + + + + S + F+LA++ LLP
Sbjct: 20 ESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLP 79
Query: 66 VDIF----LVSYMKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVIL-FCVFFWIPFVY 120
I L+S+ +N + W N ++ ++G + L S+ C+F +PF +
Sbjct: 80 FSIISNEILLSFPQNY---YIQWLNGSL--------IHGLWNLASLFSNLCLFVLMPFAF 128
Query: 121 FYYEEKDDDDTSKCTQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSL 180
F+ E + K I+ + TL +++ ALL+L +V + +N ++ E + L
Sbjct: 129 FFLESEGFAGLKK--GIRARILETLVMLLLLALLILGIVWVASALIDN-DAASMESLYDL 185
Query: 181 FEELGSSHGLAALSFSISSLTLIGMLAAITYTAYGMSAL 219
+E L + S ++L+G L + T G+S +
Sbjct: 186 WE--------FYLPYLYSCISLMGCLLLLLCTPVGLSRM 216
>gi|169215514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 33.1 bits (74), Expect = 0.66
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 223 LIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERL-RTLKK 281
L++G + + + +D+ E E+ + ++ +S+ +PL + A ++ ER+ R L++
Sbjct: 75 LMRGLEAESESLNQRLQDLSERERSL--LRRRSQAAQPLQGEAREAARERAERVRRRLEE 132
Query: 282 RERHLEFIE 290
ERH E++E
Sbjct: 133 AERHKEYLE 141
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 31.2 bits (69), Expect = 2.5
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 221 LNLIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLK 280
+NL S +R +E I +++ I ++ K+G+ L A+ + +Q +ER L+
Sbjct: 621 INLQSALESERRDRTHGSEIINDLQGRICGLEEDLKNGKILLAKVELEKRQLQERFTDLE 680
Query: 281 KRERHLE 287
K + ++E
Sbjct: 681 KEKSNME 687
>gi|4885521 neuronatin isoform alpha [Homo sapiens]
Length = 81
Score = 31.2 bits (69), Expect = 2.5
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 1 MATSGAASAEL-VIGWCIFGLLLLAILAFCWIYV 33
MA AASAEL +IGW IF +LL L C +V
Sbjct: 1 MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWV 34
>gi|4506259 prostaglandin E receptor 4, subtype EP4 [Homo sapiens]
Length = 488
Score = 30.8 bits (68), Expect = 3.3
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 17 IFGLL--LLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFLVSYM 74
IFG++ L+AI+ C +SR+E + + T + LA+ + LL + + +YM
Sbjct: 29 IFGVVGNLVAIVVLC-------KSRKEQKETTFYTLVCGLAVTDLLGTLLVSPVTIATYM 81
Query: 75 KNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCV-----FFWIPFVYFY 122
K Q W + +L +++L + + C + I YFY
Sbjct: 82 KGQ------WPGGQPLCEYSTFILL-FFSLSGLSIICAMSVERYLAINHAYFY 127
>gi|169215927 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 223 LIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERL-RTLKK 281
L++G + + + +D+ E E+ + ++ +S+ +PL + A ++ ER+ R L++
Sbjct: 75 LMRGLEAESESLNQRLQDLSERERSL--LRRRSQAAQPLQGEAREAARERAERVRRRLEE 132
Query: 282 RERHLEFIE 290
ERH E +E
Sbjct: 133 AERHKEDLE 141
>gi|239752137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 223 LIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERL-RTLKK 281
L++G + + + +D+ E E+ + ++ +S+ +PL + A ++ ER+ R L++
Sbjct: 75 LMRGLEAESESLNQRLQDLSERERSL--LRRRSQAAQPLQGEAREAARERAERVRRRLEE 132
Query: 282 RERHLEFIE 290
ERH E +E
Sbjct: 133 AERHKEDLE 141
>gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 356
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 223 LIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERL-RTLKK 281
L++G + + + +D+ E E+ + ++ +S+ +PL + A ++ ER+ R L++
Sbjct: 75 LMRGLEAESESLNQRLQDLSERERSL--LRRRSQAAQPLQGEAREAARERAERVRRRLEE 132
Query: 282 RERHLEFIE 290
ERH E +E
Sbjct: 133 AERHKEDLE 141
>gi|56790897 LMBR1 domain containing 2 [Homo sapiens]
Length = 695
Score = 30.4 bits (67), Expect = 4.3
Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 40/200 (20%)
Query: 76 NQNGTFKDWANANVSRQIEDTVLYGYY-TLYSVILFCVFFWIPFVYFYYEEKDDDDTSKC 134
+Q+ FK W+ I D ++ ++ +Y F + +PF+ Y T K
Sbjct: 91 SQHPCFKPWS------YIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSITGK- 143
Query: 135 TQIKTALKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSLFEELGSSHGLAALS 194
IKTAL + LL+ GAF+ N EW +++++
Sbjct: 144 --IKTALIENA--IYYGTYLLIFGAFLIYVAVNPHLHLEWNQLQTI-------------- 185
Query: 195 FSISSLTLIGMLAAITYTAYGMSALPLNLIKGTR-------------SAAYERLENTEDI 241
I++ G+ + YG+ +P + G + E+ + E++
Sbjct: 186 -GIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENL 244
Query: 242 EEVEQHIQTIKSKSKDGRPL 261
E+ + ++ + K PL
Sbjct: 245 EDAMEEVRKVNESIKYNHPL 264
>gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens]
Length = 445
Score = 30.0 bits (66), Expect = 5.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 206 LAAITYTAYGMSALPLNLI-KGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPAR 264
L AI M A ++L K R +RL + E + +Q ++ +++ L
Sbjct: 275 LKAIEEANKKMQAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDS 334
Query: 265 DKRALKQFEERLRTLKKRERHLE 287
DK +Q EE +L++R RHL+
Sbjct: 335 DKERYQQLEEASASLRERIRHLD 357
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 5.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 206 LAAITYTAYGMSALPLNLI-KGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPAR 264
L AI M A ++L K R +RL + E + +Q ++ +++ L
Sbjct: 275 LKAIEEANKKMQAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDS 334
Query: 265 DKRALKQFEERLRTLKKRERHLE 287
DK +Q EE +L++R RHL+
Sbjct: 335 DKERYQQLEEASASLRERIRHLD 357
>gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens]
Length = 438
Score = 30.0 bits (66), Expect = 5.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 206 LAAITYTAYGMSALPLNLI-KGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPAR 264
L AI M A ++L K R +RL + E + +Q ++ +++ L
Sbjct: 275 LKAIEEANKKMQAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDS 334
Query: 265 DKRALKQFEERLRTLKKRERHLE 287
DK +Q EE +L++R RHL+
Sbjct: 335 DKERYQQLEEASASLRERIRHLD 357
>gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens]
Length = 466
Score = 30.0 bits (66), Expect = 5.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 206 LAAITYTAYGMSALPLNLI-KGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPAR 264
L AI M A ++L K R +RL + E + +Q ++ +++ L
Sbjct: 275 LKAIEEANKKMQAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDS 334
Query: 265 DKRALKQFEERLRTLKKRERHLE 287
DK +Q EE +L++R RHL+
Sbjct: 335 DKERYQQLEEASASLRERIRHLD 357
>gi|30089960 CDC42-binding protein kinase alpha isoform A [Homo
sapiens]
Length = 1638
Score = 29.6 bits (65), Expect = 7.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 231 AYERLENT-----EDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRE 283
AYE+ T ED+ ++E H + + +++ R L + + KQ E L LK+++
Sbjct: 532 AYEKQIKTLQQEREDLNKLEVHTEALAAEASKDRKLREQSEHYSKQLENELEGLKQKQ 589
>gi|21362072 hypothetical protein LOC84645 [Homo sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 7.3
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 220 PLNLIKGTRSAAYERL--ENTEDIEEVEQHIQTIKSKSKD-----GRPLPARDKR---AL 269
P N+ + + + E+ + T D+E+ +Q +Q I + KD + PAR K L
Sbjct: 96 PANMCQANGAYSREQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPEL 155
Query: 270 KQFEERLRTLKKRERHLEFIE 290
+FEE ++ +++R+ L +E
Sbjct: 156 DRFEELVKEIQERKEFLADME 176
>gi|194733735 transient receptor potential cation channel, subfamily
C, member 3 isoform a [Homo sapiens]
Length = 921
Score = 29.3 bits (64), Expect = 9.6
Identities = 51/261 (19%), Positives = 102/261 (39%), Gaps = 46/261 (17%)
Query: 18 FGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFLVSYMKNQ 77
FG+L + I AF ++ Q+ + + V + L+ LP +I +Y +++
Sbjct: 547 FGMLSIFIAAFTARFLAFLQATKAQQYVDSYVQESDLS-----EVTLPPEIQYFTYARDK 601
Query: 78 NGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQI 137
W ++ E LY++ + F I ++ E S +
Sbjct: 602 ------WLPSDPQIISEG--------LYAIAVVLSFSRIAYILPANESFGPLQISLGRTV 647
Query: 138 KTALKYTLGFVVICALLLLVGAFVPLNV-----PNNKNSTEWEKVKSLFEELGSSHGLAA 192
K K+ + F+++ ++G F+ + N +T E K+LF +
Sbjct: 648 KDIFKFMVLFIMVF-FAFMIGMFILYSYYLGAKVNAAFTTVEESFKTLFWSI-------- 698
Query: 193 LSFSISSLTLIGM------LAAITYTAYG-----MSALPLNLIKGTRSAAYERLENTEDI 241
F +S +T + + + I Y YG M + LN++ +++Y+ +E+ D+
Sbjct: 699 --FGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDV 756
Query: 242 EEVEQHIQTIKSKSKDGRPLP 262
E + S DG+ LP
Sbjct: 757 EWKFARSKLWLSYFDDGKTLP 777
>gi|4507687 transient receptor potential cation channel, subfamily
C, member 3 isoform b [Homo sapiens]
Length = 848
Score = 29.3 bits (64), Expect = 9.6
Identities = 51/261 (19%), Positives = 102/261 (39%), Gaps = 46/261 (17%)
Query: 18 FGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFLVSYMKNQ 77
FG+L + I AF ++ Q+ + + V + L+ LP +I +Y +++
Sbjct: 474 FGMLSIFIAAFTARFLAFLQATKAQQYVDSYVQESDLS-----EVTLPPEIQYFTYARDK 528
Query: 78 NGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQI 137
W ++ E LY++ + F I ++ E S +
Sbjct: 529 ------WLPSDPQIISEG--------LYAIAVVLSFSRIAYILPANESFGPLQISLGRTV 574
Query: 138 KTALKYTLGFVVICALLLLVGAFVPLNV-----PNNKNSTEWEKVKSLFEELGSSHGLAA 192
K K+ + F+++ ++G F+ + N +T E K+LF +
Sbjct: 575 KDIFKFMVLFIMVF-FAFMIGMFILYSYYLGAKVNAAFTTVEESFKTLFWSI-------- 625
Query: 193 LSFSISSLTLIGM------LAAITYTAYG-----MSALPLNLIKGTRSAAYERLENTEDI 241
F +S +T + + + I Y YG M + LN++ +++Y+ +E+ D+
Sbjct: 626 --FGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDV 683
Query: 242 EEVEQHIQTIKSKSKDGRPLP 262
E + S DG+ LP
Sbjct: 684 EWKFARSKLWLSYFDDGKTLP 704
>gi|90403581 meiosis defective 1 [Homo sapiens]
Length = 1274
Score = 29.3 bits (64), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 356 LPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFW 394
+P LQ V+ +L+ ++Y S G R + +WFFW
Sbjct: 769 IPDLQLVYTHHPLLLRFFLLYPELMSRYGHRVLELWFFW 807
>gi|52353278 olfactory receptor, family 6, subfamily T, member 1
[Homo sapiens]
Length = 323
Score = 29.3 bits (64), Expect = 9.6
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 134 CTQIKTALKYTLGFV-VICALLLLVGAFVPLNVPNNKNSTEWEKVKSLFEELGSSHGLAA 192
C+Q+ A + GF+ V+C +L+ A +P PN + + L G +H L
Sbjct: 141 CSQLVLA-SWLAGFLWVLCPTVLM--ASLPFCGPNGIDHFFRDSWPLLRLSCGDTHLLKL 197
Query: 193 LSFSISSLTLIGMLAAITYTAY 214
++F +S+L L+G L A+T +Y
Sbjct: 198 VAFMLSTLVLLGSL-ALTSVSY 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,335,594
Number of Sequences: 37866
Number of extensions: 757330
Number of successful extensions: 3203
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3194
Number of HSP's gapped (non-prelim): 21
length of query: 540
length of database: 18,247,518
effective HSP length: 107
effective length of query: 433
effective length of database: 14,195,856
effective search space: 6146805648
effective search space used: 6146805648
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.