Search of human proteins with 28872782

Search of human proteins with 28872782

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28872782 CDK5 regulatory subunit associated protein 1
isoform a [Homo sapiens]
         (587 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28872782 CDK5 regulatory subunit associated protein 1 isoform...  1165   0.0  
gi|28872784 CDK5 regulatory subunit associated protein 1 isoform...   982   0.0  
gi|93277076 CDK5 regulatory subunit associated protein 1-like 1 ...   130   3e-30
gi|143770880 laminin, beta 4 [Homo sapiens]                            33   0.56 
gi|32698724 patatin-like phospholipase domain containing 2 [Homo...    33   0.95 
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso...    30   8.1  
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso...    30   8.1  
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso...    30   8.1  
gi|110227631 synaptotagmin-like 3 [Homo sapiens]                       30   8.1  

>gi|28872782 CDK5 regulatory subunit associated protein 1 isoform a
           [Homo sapiens]
          Length = 587

 Score = 1165 bits (3015), Expect = 0.0
 Identities = 587/587 (100%), Positives = 587/587 (100%)

Query: 1   MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA 60
           MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
Sbjct: 1   MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA 60

Query: 61  AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW 120
           AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
Sbjct: 61  AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW 120

Query: 121 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI 180
           SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
Sbjct: 121 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI 180

Query: 181 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP 240
           LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
Sbjct: 181 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP 240

Query: 241 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL 300
           VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
Sbjct: 241 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL 300

Query: 301 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS 360
           GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
Sbjct: 301 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS 360

Query: 361 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP 420
           PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
Sbjct: 361 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP 420

Query: 421 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV 480
           GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
Sbjct: 421 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV 480

Query: 481 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM 540
           KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
Sbjct: 481 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM 540

Query: 541 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC 587
           EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
Sbjct: 541 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC 587


>gi|28872784 CDK5 regulatory subunit associated protein 1 isoform b
           [Homo sapiens]
          Length = 497

 Score =  982 bits (2539), Expect = 0.0
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150
           MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210
           AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 270
           LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 180

Query: 271 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 330
           RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN
Sbjct: 181 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 240

Query: 331 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 390
           YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS
Sbjct: 241 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 300

Query: 391 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 450
           GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV
Sbjct: 301 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 360

Query: 451 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 510
           QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV
Sbjct: 361 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 420

Query: 511 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 570
           LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL
Sbjct: 421 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 480

Query: 571 RGHVLCRTTLRDSSAYC 587
           RGHVLCRTTLRDSSAYC
Sbjct: 481 RGHVLCRTTLRDSSAYC 497


>gi|93277076 CDK5 regulatory subunit associated protein 1-like 1
           [Homo sapiens]
          Length = 579

 Score =  130 bits (327), Expect = 3e-30
 Identities = 116/480 (24%), Positives = 223/480 (46%), Gaps = 71/480 (14%)

Query: 53  KDFSSRLAAGPTFQHFLKSASAPQ------EKLSSEVEDPPPYLMMDELLGRQRKVYLET 106
           +D  S+  + P  +HF++    P+      +K   E E+ PP    D  +   +K+++ T
Sbjct: 14  EDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPP---SDSTIPGIQKIWIRT 70

Query: 107 YGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALK 166
           +GC  N +D E     L   GY  T N  +AD+ LL +C+++  AE       H   ++K
Sbjct: 71  WGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED------HFRNSIK 124

Query: 167 TRRPRSRVPLRIGILGCMAE-RLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAA 225
             +  ++   +I + GC+ + + +++ L    ++ +       + + R++ V E   +  
Sbjct: 125 KAQEENK---KIVLAGCVPQAQPRQDYLKGLSIIGV-------QQIDRVVEVVEETIKGH 174

Query: 226 NVLL---------SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERS 276
           +V L          L     D+  ++ +       +SI  GC N C+YC     RG   S
Sbjct: 175 SVRLLGQKKDNGRRLGGARLDLPKIRKNPLIE--IISINTGCLNACTYCKTKHARGNLAS 232

Query: 277 RPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQG 336
            PI  +++  K+  ++G+ E+ L  ++  ++                 R   TN  T   
Sbjct: 233 YPIDELVDRAKQSFQEGVCEIWLTSEDTGAY----------------GRDIGTNLPT--- 273

Query: 337 GLRFAHLLDQVSRVDPE---MRIRFTSP-HPKDFPDEVLQLIHERDNICKQIHLPAQSGS 392
                 LL ++  V PE   +R+  T+P +  +  +E+ ++++    +   +H+P QS S
Sbjct: 274 ------LLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNH-PRVYAFLHIPVQSAS 326

Query: 393 SRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQY 452
             VL  M+R Y    +  +V  ++E +PG+++++D I GF GET++D  +TV L+ E ++
Sbjct: 327 DSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKF 386

Query: 453 NMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLV 512
              F+  +  R  T A     + VP +VK +R ++L  +F   +   ++  +G  Q VLV
Sbjct: 387 PSLFINQFYPRPGTPA--AKMEQVPAQVKKQRTKDLSRVFHSYSPYDHK--IGERQQVLV 442


>gi|143770880 laminin, beta 4 [Homo sapiens]
          Length = 1761

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 213  RLLAVAESGQQAANVLLSLDETYADVMPVQ-TSASATSAFVSIMRGCDNMCSYCIVPFTR 271
            +LL  A++ ++AAN+LL+LD+T   +   Q T   A S    +      +    +    +
Sbjct: 1551 KLLVKAKAAEKAANILLNLDKTLNQLQQAQITQGRANSTITQLTANITKIKKNVL----Q 1606

Query: 272  GRERSRPIASILEEVKKLS--EQGLKEVTLLGQNVNSFRDNSEVQFNSA 318
               ++R + S LE  K+ S  E GL  +    Q       N++VQ  SA
Sbjct: 1607 AENQTREMKSELELAKQRSGLEDGLSLLQTKLQRHQDHAVNAKVQAESA 1655


>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
           sapiens]
          Length = 504

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 303 NVNSFR-DNSEVQFNSAVPTNLSRGF------TTNYKTKQG---GLRFAHLLDQVSRVDP 352
           N++  R  N+ +QFN      LS+              KQG   GLRF      ++R +P
Sbjct: 201 NIHELRVTNTSIQFNLRNLYRLSKALFPPEPLVLREMCKQGYRDGLRFLQRNGLLNRPNP 260

Query: 353 EMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVE-- 410
            + +    PH  +  D+ ++     D       LP +      L A       EA VE  
Sbjct: 261 LLALPPARPHGPEDKDQAVESAQAED----YSQLPGEDHILEHLPARLNEALLEACVEPT 316

Query: 411 -LVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL----------REVQYNMGFLFA 459
            L+  +   +P V L++  +  +    E     T+ LL          R ++   G +  
Sbjct: 317 DLLTTLSNMLP-VRLATAMMVPYTLPLESALSFTIRLLEWLPDVPEDIRWMKEQTGSICQ 375

Query: 460 YS-MRQKTRAYHRLKDDVPEEVKLRRLEELITI 491
           Y  MR K +    L   +PE+V+LRR++ L ++
Sbjct: 376 YLVMRAKRKLGRHLPSRLPEQVELRRVQSLPSV 408


>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
           isoform 1 precursor [Homo sapiens]
          Length = 303

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 113 VNDTEIAWSILQKSGYLRTSNLQEAD 138
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
           isoform 3 precursor [Homo sapiens]
          Length = 175

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 113 VNDTEIAWSILQKSGYLRTSNLQEAD 138
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
           isoform 2 precursor [Homo sapiens]
          Length = 230

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 113 VNDTEIAWSILQKSGYLRTSNLQEAD 138
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


>gi|110227631 synaptotagmin-like 3 [Homo sapiens]
          Length = 542

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 44  PERQEDGARKDFSSRLAAGPTFQHFLKSASAPQEKLSSEVE 84
           P+R   G RK    R    PTFQ  LK   AP + ++ +++
Sbjct: 285 PDRSSQGKRKTGVQRNTVDPTFQETLKYQVAPAQLVTRQLQ 325


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,503,048
Number of Sequences: 37866
Number of extensions: 913531
Number of successful extensions: 2421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 9
length of query: 587
length of database: 18,247,518
effective HSP length: 108
effective length of query: 479
effective length of database: 14,157,990
effective search space: 6781677210
effective search space used: 6781677210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.