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Search of human proteins with 27894359
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27894359 nuclear receptor subfamily 4, group A, member 3
isoform c [Homo sapiens]
(443 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 931 0.0
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 880 0.0
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 880 0.0
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 880 0.0
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo... 375 e-104
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 269 3e-72
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 269 3e-72
gi|11415052 retinoid X receptor, beta [Homo sapiens] 142 8e-34
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 125 8e-29
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 125 1e-28
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 124 2e-28
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 122 7e-28
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 122 7e-28
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof... 121 1e-27
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo... 121 1e-27
gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens] 119 4e-27
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 118 9e-27
gi|238550159 estrogen-related receptor beta [Homo sapiens] 116 5e-26
gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens] 116 5e-26
gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens] 114 2e-25
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi... 113 3e-25
gi|45545427 estrogen-related receptor gamma isoform 2 [Homo sapi... 113 3e-25
gi|45545433 estrogen-related receptor gamma isoform 1 [Homo sapi... 113 3e-25
gi|197209821 estrogen-related receptor gamma isoform 2 [Homo sap... 113 3e-25
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom... 112 7e-25
gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens] 111 1e-24
gi|18860920 estrogen-related receptor alpha [Homo sapiens] 110 2e-24
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 110 3e-24
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof... 110 3e-24
gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens] 109 4e-24
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 931 bits (2407), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST
Sbjct: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
Query: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA
Sbjct: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
Query: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV
Sbjct: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
Query: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES
Sbjct: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
Query: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA
Sbjct: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
Query: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE
Sbjct: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
Query: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRVS 420
VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRVS
Sbjct: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRVS 420
Query: 421 FMISCFQMNDQGLYLWLLVIRVD 443
FMISCFQMNDQGLYLWLLVIRVD
Sbjct: 421 FMISCFQMNDQGLYLWLLVIRVD 443
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 880 bits (2275), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST
Sbjct: 12 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 71
Query: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA
Sbjct: 72 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 131
Query: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV
Sbjct: 132 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 191
Query: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES
Sbjct: 192 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 251
Query: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA
Sbjct: 252 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 311
Query: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE
Sbjct: 312 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 371
Query: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 418
VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR
Sbjct: 372 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 429
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 880 bits (2275), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST
Sbjct: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
Query: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA
Sbjct: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
Query: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV
Sbjct: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
Query: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES
Sbjct: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
Query: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA
Sbjct: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
Query: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE
Sbjct: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
Query: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 418
VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR
Sbjct: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 418
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 880 bits (2275), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST
Sbjct: 1 MPCVQAQYSPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPSIST 60
Query: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA
Sbjct: 61 FVEGYSSNYELKPSCVYQMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIPPA 120
Query: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV
Sbjct: 121 SSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAV 180
Query: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES
Sbjct: 181 PTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALES 240
Query: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA
Sbjct: 241 HPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAA 300
Query: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE
Sbjct: 301 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 360
Query: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 418
VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR
Sbjct: 361 VVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSR 418
>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
sapiens]
Length = 598
Score = 375 bits (964), Expect = e-104
Identities = 225/441 (51%), Positives = 272/441 (61%), Gaps = 78/441 (17%)
Query: 1 MPCVQAQYSPSPPGSSYAAQTYS----SEYTTEIMNPDYTKLTMDLGSTEITATATTSLP 56
MPCVQAQY SP G+S A+Q+YS EY+++ + P++ K +MDL +TEITAT TSLP
Sbjct: 1 MPCVQAQYGSSPQGASPASQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEITAT--TSLP 58
Query: 57 SISTFVEGYSSNYELKPSCVYQM----QRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQH 112
S STF++ YS+ Y++KP C+YQM Q+ IKVE+ + +Y H H
Sbjct: 59 SFSTFMDNYSTGYDVKPPCLYQMPLSGQQSSIKVEDIQMHNYQQHSH------------- 105
Query: 113 QQPSIPPASSPEDEVLP-STSMYFKQSPPSTPTTPAFPPQAGALWDEALPSAPGCIAPGP 171
+PP S +E++P S S+Y+K S P TPTTP F Q +WD+ PG
Sbjct: 106 ----LPPQS---EEMMPHSGSVYYKPSSPPTPTTPGFQVQHSPMWDD----------PGS 148
Query: 172 LLDPPMKAVPTV--------AGARFPLFHFKPSPPHPPAPSPA----GGHHLGYDPTAAA 219
L + V T +R LF FK SPP P S G H+ +P
Sbjct: 149 LHNFHQNYVATTHMIEQRKTPVSRLSLFSFKQSPPGTPVSSCQMRFDGPLHVPMNPE--- 205
Query: 220 ALSLPLGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPS 279
P G+ Q A+ + P+ K A+ + FP L + AS LL +PS
Sbjct: 206 ----PAGSHHVVDGQTFAVPN-----PIRKPAS-MGFPGLQIGH---ASQLL--DTQVPS 250
Query: 280 PPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKR 339
PPSR S S EG CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKR
Sbjct: 251 PPSRGSPSNEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKR 310
Query: 340 RRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMM 399
RRNRCQYCRFQKCL+VGMVKEVVRTDSLKGRRGRLPSKPKS P +PSPPSPP+ ++
Sbjct: 311 RRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKS-----PQEPSPPSPPVSLI 365
Query: 400 NALVRALTDSTP--RDLDYSR 418
+ALVRA DS P LDYSR
Sbjct: 366 SALVRAHVDSNPAMTSLDYSR 386
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 269 bits (688), Expect = 3e-72
Identities = 182/440 (41%), Positives = 235/440 (53%), Gaps = 66/440 (15%)
Query: 1 MPCVQAQY---SPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPS 57
MPC+QAQY +PSP + A ++ + P++ K TMDL S E A T+LPS
Sbjct: 1 MPCIQAQYGTPAPSPGPRDHLA--------SDPLTPEFIKPTMDLASPEAAPAAPTALPS 52
Query: 58 ISTFVEGYSSNYELKPSCVYQMQ---RPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQ 114
STF++GY+ ++ + +YQ+ +P + + +
Sbjct: 53 FSTFMDGYTGEFD---TFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVY 109
Query: 115 PSIP-PASSPEDEVLPSTSMYFKQSPPS--TPTTPAFPPQAGALWDEALPSAPGCIAPGP 171
P P S P DE L S+ + SP S +P+TP+F P + WD + G +P
Sbjct: 110 GCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSF----GHFSPSQ 165
Query: 172 L---LDPPMKAVPTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSL-PLGA 227
L + +P +G P F SPP P+PS A + L L P A
Sbjct: 166 TYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPS-----------LAQSPLKLFPSQA 214
Query: 228 AAAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSS 287
G E Y +P A FP L T S + ++P + S +RS +
Sbjct: 215 THQLG------EGESYSMPTA-------FPGLAPTSPHLEGSGILDTP-VTSTKARSGAP 260
Query: 288 G--EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQ 345
G EG CAVCGDNA+CQHYGVRTCEGCKGFFKRTVQKNAKY+CLANK+CPVDKRRRNRCQ
Sbjct: 261 GGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQ 320
Query: 346 YCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRA 405
+CRFQKCL+VGMVKEVVRTDSLKGRRGRLPSKPK P P + P ++ +LVRA
Sbjct: 321 FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---------PDASPANLLTSLVRA 371
Query: 406 LTDSTP--RDLDYSRVSFMI 423
DS P LDYS+ ++
Sbjct: 372 HLDSGPSTAKLDYSKFQELV 391
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 269 bits (688), Expect = 3e-72
Identities = 182/440 (41%), Positives = 235/440 (53%), Gaps = 66/440 (15%)
Query: 1 MPCVQAQY---SPSPPGSSYAAQTYSSEYTTEIMNPDYTKLTMDLGSTEITATATTSLPS 57
MPC+QAQY +PSP + A ++ + P++ K TMDL S E A T+LPS
Sbjct: 1 MPCIQAQYGTPAPSPGPRDHLA--------SDPLTPEFIKPTMDLASPEAAPAAPTALPS 52
Query: 58 ISTFVEGYSSNYELKPSCVYQMQ---RPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQ 114
STF++GY+ ++ + +YQ+ +P + + +
Sbjct: 53 FSTFMDGYTGEFD---TFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVY 109
Query: 115 PSIP-PASSPEDEVLPSTSMYFKQSPPS--TPTTPAFPPQAGALWDEALPSAPGCIAPGP 171
P P S P DE L S+ + SP S +P+TP+F P + WD + G +P
Sbjct: 110 GCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSF----GHFSPSQ 165
Query: 172 L---LDPPMKAVPTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSL-PLGA 227
L + +P +G P F SPP P+PS A + L L P A
Sbjct: 166 TYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPS-----------LAQSPLKLFPSQA 214
Query: 228 AAAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSS 287
G E Y +P A FP L T S + ++P + S +RS +
Sbjct: 215 THQLG------EGESYSMPTA-------FPGLAPTSPHLEGSGILDTP-VTSTKARSGAP 260
Query: 288 G--EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQ 345
G EG CAVCGDNA+CQHYGVRTCEGCKGFFKRTVQKNAKY+CLANK+CPVDKRRRNRCQ
Sbjct: 261 GGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQ 320
Query: 346 YCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRA 405
+CRFQKCL+VGMVKEVVRTDSLKGRRGRLPSKPK P P + P ++ +LVRA
Sbjct: 321 FCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---------PDASPANLLTSLVRA 371
Query: 406 LTDSTP--RDLDYSRVSFMI 423
DS P LDYS+ ++
Sbjct: 372 HLDSGPSTAKLDYSKFQELV 391
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 142 bits (357), Expect = 8e-34
Identities = 84/232 (36%), Positives = 112/232 (48%), Gaps = 44/232 (18%)
Query: 139 PPSTPTTPAFPPQAGALWDEALPSAPGCIAPGPLLDPPMKAVPTVAGARFPLFHFKPSPP 198
PP +P P PP PS G AP P PPM P G+ FP+ P
Sbjct: 96 PPPSPPGPPLPPSTA-------PSLGGSGAPPP---PPMPPPPL--GSPFPVISSSMGSP 143
Query: 199 HPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPP 258
P P+P G P + +SLP G + PP
Sbjct: 144 GLPPPAPPGFSGPVSSPQINSTVSLPGGGSG---------------------------PP 176
Query: 259 LGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKR 318
+ P +LG PP +G+ CA+CGD ++ +HYGV +CEGCKGFFKR
Sbjct: 177 EDVKPP-----VLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKR 231
Query: 319 TVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGR 370
T++K+ Y C NK+C VDKR+RNRCQYCR+QKCL+ GM +E V+ + +G+
Sbjct: 232 TIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGK 283
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 125 bits (314), Expect = 8e-29
Identities = 79/230 (34%), Positives = 106/230 (46%), Gaps = 28/230 (12%)
Query: 201 PAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLG 260
P AGG+ G +P A AA G AG Q S AP G
Sbjct: 11 PQDDVAGGNPGGPNPAAQAAR----GGGGGAGEQQQQAGS----------GAPHTPQTPG 56
Query: 261 LTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTV 320
+P G+ PP S C VCGD ++ +HYG TCEGCK FFKR+V
Sbjct: 57 QPGAPATPGTAGDKGQ--GPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSV 114
Query: 321 QKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKS 380
++N Y C AN+NCP+D+ RN+CQYCR +KCL VGM +E V +RGR+P +
Sbjct: 115 RRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV-------QRGRMPPTQPN 167
Query: 381 PLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRVSFMISCFQMND 430
P Q + P + C ++ + L + P Y + C Q N+
Sbjct: 168 PGQYALTNGDPLNGH-CYLSGYISLLLRAEP----YPTSRYGSQCMQPNN 212
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 125 bits (313), Expect = 1e-28
Identities = 70/187 (37%), Positives = 98/187 (52%), Gaps = 16/187 (8%)
Query: 194 KPSPPHPP-APSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGLPLAKRAA 252
KP HP +P P +A+ PL A + + P G A
Sbjct: 37 KPMDSHPSYTDTPVSA------PRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGI 90
Query: 253 PLAFPP---LGLTPSPTASSLLGESPSLPS------PPSRSSSSGEGTCAVCGDNAACQH 303
L PP L + S ++S + P LP P + S + CA+CGD ++ +H
Sbjct: 91 NLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKH 150
Query: 304 YGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
YGV +CEGCKGFFKRT++K+ Y C NK+C +DKR+RNRCQYCR+QKCL +GM +E V+
Sbjct: 151 YGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQ 210
Query: 364 TDSLKGR 370
+ + R
Sbjct: 211 EERQRSR 217
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 124 bits (310), Expect = 2e-28
Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 34/208 (16%)
Query: 164 PGCIAPGPLLDPPMKAVPTVAGARFPLFHFKPSPPHPPAPSPAGGHHLGYDPTAAAALSL 223
PG +PG L P + G PP SP G H + T S
Sbjct: 39 PGIGSPGQLHSPISTLSSPINGM---------GPPFSVISSPMGPHSMSVPTTPTLGFS- 88
Query: 224 PLGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSR 283
GS + +P ++ PPLGL + +L +P+ PS
Sbjct: 89 -------TGSPQLSSPMNPVS------SSEDIKPPLGL------NGVL----KVPAHPSG 125
Query: 284 SSSS-GEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRN 342
+ +S + CA+CGD ++ +HYGV +CEGCKGFFKRTV+K+ Y C NK+C +DKR+RN
Sbjct: 126 NMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRN 185
Query: 343 RCQYCRFQKCLSVGMVKEVVRTDSLKGR 370
RCQYCR+QKCL++GM +E V+ + +G+
Sbjct: 186 RCQYCRYQKCLAMGMKREAVQEERQRGK 213
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 122 bits (306), Expect = 7e-28
Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 203 PSPAGGHHLGYDPTAAAALSLP--LGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLG 260
P+P GGH GY P A P LG + G AL + + LP++ + P P
Sbjct: 9 PTPGGGHLNGY-PVPPYAFFFPPMLGGLSPPG----ALTTLQHQLPVSGYSTP---SPAT 60
Query: 261 LTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTV 320
+ ++S + SP P P R C VC D ++ HYGV CEGCKGFF+R++
Sbjct: 61 IETQSSSSEEIVPSPPSPPPLPRIYKP----CFVCQDKSSGYHYGVSACEGCKGFFRRSI 116
Query: 321 QKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR 371
QKN Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K ++
Sbjct: 117 QKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 167
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 122 bits (306), Expect = 7e-28
Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 203 PSPAGGHHLGYDPTAAAALSLP--LGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLG 260
P+P GGH GY P A P LG + G AL + + LP++ + P P
Sbjct: 9 PTPGGGHLNGY-PVPPYAFFFPPMLGGLSPPG----ALTTLQHQLPVSGYSTP---SPAT 60
Query: 261 LTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTV 320
+ ++S + SP P P R C VC D ++ HYGV CEGCKGFF+R++
Sbjct: 61 IETQSSSSEEIVPSPPSPPPLPRIYKP----CFVCQDKSSGYHYGVSACEGCKGFFRRSI 116
Query: 321 QKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR 371
QKN Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K ++
Sbjct: 117 QKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 167
>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
1 [Homo sapiens]
Length = 541
Score = 121 bits (303), Expect = 1e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 83 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
Query: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373
FQKCLSVGM E VR D ++G R +
Sbjct: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
2 [Homo sapiens]
Length = 495
Score = 121 bits (303), Expect = 1e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
Query: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373
FQKCLSVGM E VR D ++G R +
Sbjct: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
>gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]
Length = 443
Score = 119 bits (299), Expect = 4e-27
Identities = 62/143 (43%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 229 AAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSG 288
A GS A LES + P + ++ T S ++ ++ SPS P PP
Sbjct: 29 ATGGSCFAGLESFAWPQPASLQSVE--------TQSTSSEEMVPSSPSPPPPPRVYKP-- 78
Query: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
C VC D ++ HYGV +CEGCKGFF+R++QKN Y C +KNC ++K RNRCQYCR
Sbjct: 79 ---CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCR 135
Query: 349 FQKCLSVGMVKEVVRTDSLKGRR 371
QKC VGM KE VR D K ++
Sbjct: 136 LQKCFEVGMSKEAVRNDRNKKKK 158
>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
a [Homo sapiens]
Length = 414
Score = 118 bits (296), Expect = 9e-27
Identities = 59/144 (40%), Positives = 83/144 (57%), Gaps = 27/144 (18%)
Query: 248 AKRAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEG----------------T 291
A +A P+ PP G +P G + S P+++++ G+G
Sbjct: 23 ASQAPPVPGPPPGAPHTPQTPGQGGPA----STPAQTAAGGQGGPGGPGSDKQQQQQHIE 78
Query: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
C VCGD ++ +HYG TCEGCK FFKR+V++N Y C AN+NCP+D+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 352 CLSVGMVKEVVRTDSLKGRRGRLP 375
CL VGM +E V +RGR+P
Sbjct: 139 CLKVGMRREAV-------QRGRMP 155
>gi|238550159 estrogen-related receptor beta [Homo sapiens]
Length = 508
Score = 116 bits (290), Expect = 5e-26
Identities = 81/212 (38%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 194 KPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGL--PLAKRA 251
K P P + A HH P G++ A+G AL +H GL P
Sbjct: 17 KTEPSSPSSGIDALSHHS------------PSGSSDASGGFGLALGTHANGLDSPPMFAG 64
Query: 252 APLAFPPLGLTPSPTASSLLGESP-----SLPSPPSRSSSSGEGTCAVCGDNAACQHYGV 306
A L P + AS ++ +S L + P R C VCGD A+ HYGV
Sbjct: 65 AGLGGTPCRKSYEDCASGIMEDSAIKCEYMLNAIPKR-------LCLVCGDIASGYHYGV 117
Query: 307 RTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDS 366
+CE CK FFKRT+Q N +Y C A C + KRRR CQ CRF KCL VGM+KE VR D
Sbjct: 118 ASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDR 177
Query: 367 LKGRRGRLPSKPKSPLQQEPS-----QPSPPS 393
++G R K K L E S Q SPP+
Sbjct: 178 VRGGR----QKYKRRLDSESSPYLSLQISPPA 205
>gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]
Length = 454
Score = 116 bits (290), Expect = 5e-26
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 262 TPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQ 321
T S ++ ++ SPS P PP C VC D ++ HYGV +CEGCKGFF+R++Q
Sbjct: 65 TQSTSSEEMVPSSPSPPPPPRVYKP-----CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQ 119
Query: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR 371
KN Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K ++
Sbjct: 120 KNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKK 169
>gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens]
Length = 448
Score = 114 bits (284), Expect = 2e-25
Identities = 55/106 (51%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 266 TASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAK 325
T+S L SP P PP R C VC D ++ HYGV CEGCKGFF+R++QKN
Sbjct: 59 TSSEELVPSPPSPLPPPRVYKP----CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMI 114
Query: 326 YVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR 371
Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K ++
Sbjct: 115 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 160
>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 113 bits (283), Expect = 3e-25
Identities = 81/231 (35%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 194 KPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGL---PLAKR 250
K P P + + + HH P G++ A+GS ++ + H GL PL
Sbjct: 17 KTEPSSPASLTDSVNHHS------------PGGSSDASGSYSSTMNGHQNGLDSPPLYPS 64
Query: 251 AAPLAFPPLGLTPSPTASSLLGESPS------LPSPPSRSSSSGEGTCAVCGDNAACQHY 304
A L SS + E P L S P R C VCGD A+ HY
Sbjct: 65 APILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKR-------LCLVCGDIASGYHY 117
Query: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRT 364
GV +CE CK FFKRT+Q N +Y C A C + KRRR CQ CRF KCL VGM+KE VR
Sbjct: 118 GVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 177
Query: 365 DSLKGRRGRLPSKPKSPLQQEP-SQPSPPSPPICMMNALVRALTDSTPRDL 414
D ++G GR K + + P P P N +V L + P +
Sbjct: 178 DRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKI 226
>gi|45545427 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 113 bits (283), Expect = 3e-25
Identities = 81/231 (35%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 194 KPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGL---PLAKR 250
K P P + + + HH P G++ A+GS ++ + H GL PL
Sbjct: 17 KTEPSSPASLTDSVNHHS------------PGGSSDASGSYSSTMNGHQNGLDSPPLYPS 64
Query: 251 AAPLAFPPLGLTPSPTASSLLGESPS------LPSPPSRSSSSGEGTCAVCGDNAACQHY 304
A L SS + E P L S P R C VCGD A+ HY
Sbjct: 65 APILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKR-------LCLVCGDIASGYHY 117
Query: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRT 364
GV +CE CK FFKRT+Q N +Y C A C + KRRR CQ CRF KCL VGM+KE VR
Sbjct: 118 GVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 177
Query: 365 DSLKGRRGRLPSKPKSPLQQEP-SQPSPPSPPICMMNALVRALTDSTPRDL 414
D ++G GR K + + P P P N +V L + P +
Sbjct: 178 DRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKI 226
>gi|45545433 estrogen-related receptor gamma isoform 1 [Homo
sapiens]
Length = 458
Score = 113 bits (283), Expect = 3e-25
Identities = 81/231 (35%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 194 KPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGL---PLAKR 250
K P P + + + HH P G++ A+GS ++ + H GL PL
Sbjct: 40 KTEPSSPASLTDSVNHHS------------PGGSSDASGSYSSTMNGHQNGLDSPPLYPS 87
Query: 251 AAPLAFPPLGLTPSPTASSLLGESPS------LPSPPSRSSSSGEGTCAVCGDNAACQHY 304
A L SS + E P L S P R C VCGD A+ HY
Sbjct: 88 APILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKR-------LCLVCGDIASGYHY 140
Query: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRT 364
GV +CE CK FFKRT+Q N +Y C A C + KRRR CQ CRF KCL VGM+KE VR
Sbjct: 141 GVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 200
Query: 365 DSLKGRRGRLPSKPKSPLQQEP-SQPSPPSPPICMMNALVRALTDSTPRDL 414
D ++G GR K + + P P P N +V L + P +
Sbjct: 201 DRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKI 249
>gi|197209821 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 113 bits (283), Expect = 3e-25
Identities = 81/231 (35%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 194 KPSPPHPPAPSPAGGHHLGYDPTAAAALSLPLGAAAAAGSQAAALESHPYGL---PLAKR 250
K P P + + + HH P G++ A+GS ++ + H GL PL
Sbjct: 17 KTEPSSPASLTDSVNHHS------------PGGSSDASGSYSSTMNGHQNGLDSPPLYPS 64
Query: 251 AAPLAFPPLGLTPSPTASSLLGESPS------LPSPPSRSSSSGEGTCAVCGDNAACQHY 304
A L SS + E P L S P R C VCGD A+ HY
Sbjct: 65 APILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKR-------LCLVCGDIASGYHY 117
Query: 305 GVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRT 364
GV +CE CK FFKRT+Q N +Y C A C + KRRR CQ CRF KCL VGM+KE VR
Sbjct: 118 GVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 177
Query: 365 DSLKGRRGRLPSKPKSPLQQEP-SQPSPPSPPICMMNALVRALTDSTPRDL 414
D ++G GR K + + P P P N +V L + P +
Sbjct: 178 DRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKI 226
>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
sapiens]
Length = 461
Score = 112 bits (280), Expect = 7e-25
Identities = 58/140 (41%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
C VCGD + HYG+ TCE CKGFFKRTVQ N Y C +++C +DK +R RC +CRFQK
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQK 72
Query: 352 CLSVGMVKEVVRTDSLKGRRGR----------LPSKPKS-------PLQQEPSQPSPPSP 394
CL+VGM E VR D ++G R + L + K+ L+ P PP P
Sbjct: 73 CLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPP 132
Query: 395 PICMMNALVRALTDSTPRDL 414
P L +L P+ L
Sbjct: 133 PPAPDYVLPPSLHGPEPKGL 152
>gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]
Length = 523
Score = 111 bits (278), Expect = 1e-24
Identities = 70/196 (35%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 219 AALSLPLGAAAAAGSQAAALESHPYGLPLAKRAAPLAFPPLGLTPSPTASSLLGESPSLP 278
+A + P AA+ GS A + PL + +A + PP + +S+ G S +
Sbjct: 3 SAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKSEPPAPVRRQSYSSTSRGISVTKK 62
Query: 279 SPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDK 338
+ S+ C +CGD ++ HYGV TCEGCKGFF+R+ Q NA Y C KNC +D+
Sbjct: 63 THTSQIEII---PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDR 119
Query: 339 RRRNRCQYCRFQKCLSVGMVKEVVRTD--SLKGRRGRLPSKPKSPLQQE----PSQPSPP 392
RNRCQ+CR QKCL+VGM ++ V+ S K R K +QQ+ QP
Sbjct: 120 TSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEA 179
Query: 393 SPPICMMNALVRALTD 408
P N LT+
Sbjct: 180 EPLTPTYNISANGLTE 195
>gi|18860920 estrogen-related receptor alpha [Homo sapiens]
Length = 423
Score = 110 bits (276), Expect = 2e-24
Identities = 61/156 (39%), Positives = 78/156 (50%), Gaps = 28/156 (17%)
Query: 257 PPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGT-------------------CAVCGD 297
PP+ L P P + L P + GEG C VCGD
Sbjct: 33 PPVALAPGPAPTRCL--------PGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGD 84
Query: 298 NAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGM 357
A+ HYGV +CE CK FFKRT+Q + +Y C A+ C + KRRR CQ CRF KCL VGM
Sbjct: 85 VASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGM 144
Query: 358 VKEVVRTDSLKGRRGRLPSKPK-SPLQQEPSQPSPP 392
+KE VR D ++G R + +P+ PL P+ P
Sbjct: 145 LKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGP 180
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 110 bits (274), Expect = 3e-24
Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 275 PSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNC 334
PS PSPP C VC D ++ HYGV CEGCKGFF+R++QKN Y C +KNC
Sbjct: 68 PSPPSPPPLPRIYKP--CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNC 125
Query: 335 PVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR 371
++K RNRCQYCR QKC VGM KE VR D K ++
Sbjct: 126 IINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 162
>gi|53729327 nuclear receptor subfamily 6, group A, member 1 isoform
2 [Homo sapiens]
Length = 475
Score = 110 bits (274), Expect = 3e-24
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 257 PPLGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFF 316
PP L P P E L P + + + TC +CGD A HYG+ +CEGCKGFF
Sbjct: 23 PPAALPPPPRNGFCQDELAELD--PGTNDRAEQRTCLICGDRATGLHYGIISCEGCKGFF 80
Query: 317 KRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGR 373
KR++ Y C +KNC + +++RNRCQYCR KCL +GM ++ +R D + G R +
Sbjct: 81 KRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNK 137
>gi|48255918 RAR-related orphan receptor C isoform b [Homo sapiens]
Length = 497
Score = 109 bits (273), Expect = 4e-24
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
C +CGD ++ HYGV TCEGCKGFF+R+ + NA Y C +NCP+D+ RNRCQ+CR QK
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQK 69
Query: 352 CLSVGMVKEVVRTDSL-KGRRGRLPSKPKSPLQQEPSQPSPP---SPP 395
CL++GM ++ V+ + K +R L ++ + LQQ Q P +PP
Sbjct: 70 CLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTPP 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,733,033
Number of Sequences: 37866
Number of extensions: 1406672
Number of successful extensions: 21895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 1081
Number of HSP's that attempted gapping in prelim test: 12073
Number of HSP's gapped (non-prelim): 6943
length of query: 443
length of database: 18,247,518
effective HSP length: 105
effective length of query: 338
effective length of database: 14,271,588
effective search space: 4823796744
effective search space used: 4823796744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.