Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CHTF18 Sequence: fasta or formatted (975aa) NCBI GI: 27501458
Description:

CTF18, chromosome transmission fidelity factor 18 homolog

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         96           3
 C cysteine            1.2         12           1
 D aspartate           5.0         49           2
 E glutamate           7.5         73           3
 F phenylalanine       3.0         29           2
 G glycine             7.2         70           3
 H histidine           2.3         22           2
 I isoleucine          2.5         24           2
 K lysine              2.9         28           2
 L leucine            11.8        115           3
 M methionine          1.4         14           1
 N asparagine          1.9         19           1
 P proline             8.0         78           4
 Q glutamine           5.6         55           2
 R arginine            9.3         91           4
 S serine              7.2         70           2
 T threonine           3.9         38           2
 V valine              7.0         68           3
 W tryptophan          0.9          9           1
 Y tyrosine            1.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CTF18, chromosome transmission fidelity factor 18 ho... 
RFC1                  0.038   replication factor C large subunit 
ATAD5                 0.017   ATPase family, AAA domain containing 5 
RFC5                  0.014   replication factor C 5 isoform 2 
RFC5                  0.014   replication factor C 5 isoform 2 
RFC5                  0.014   replication factor C 5 isoform 1 
FSCB                  0.013   fibrous sheath CABYR binding protein 
RFC4                  0.010   replication factor C 4 
RFC4                  0.010   replication factor C 4 
RFC2                  0.010   replication factor C 2 isoform 1 
NVL                   0.009   nuclear VCP-like isoform 2 
NVL                   0.009   nuclear VCP-like isoform 1 
SPATA5L1              0.008   spermatogenesis associated 5-like 1 
OTUD5                 0.008   OTU domain containing 5 isoform a 
OTUD5                 0.008   OTU domain containing 5 isoform b 
OTUD5                 0.008   OTU domain containing 5 isoform b 
ABI3                  0.008   NESH protein isoform 2 
ABI3                  0.008   NESH protein isoform 1 
USP51                 0.007   ubiquitin specific protease 51 
SCARF2                0.007   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.007   scavenger receptor class F, member 2 isoform 2 [Homo...
FBRSL1                0.007   fibrosin-like 1 
APC2                  0.007   adenomatosis polyposis coli 2 
PEX1                  0.007   peroxin1 
NACA                  0.007   nascent polypeptide-associated complex alpha subuni...
ROBO3                 0.006   roundabout, axon guidance receptor, homolog 3 
WRNIP1                0.006   Werner helicase interacting protein isoform 2 
WRNIP1                0.006   Werner helicase interacting protein isoform 1 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
KATNAL1               0.006   katanin p60 subunit A-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press