LOC286528 24393

Name: LOC286528	Sequence: fasta or formatted (194aa)		NCBI GI: 27486601
Description: PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homolog		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt mRNA [194aa] PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase hom... alt mRNA [194aa] PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase hom...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.1 6 1 C cysteine 4.1 8 1 D aspartate 7.7 15 1 E glutamate 8.2 16 2 F phenylalanine 4.6 9 1 G glycine 3.1 6 1 H histidine 2.1 4 1 I isoleucine 6.7 13 2 K lysine 5.7 11 2 L leucine 8.2 16 2 M methionine 3.1 6 1 N asparagine 6.7 13 2 P proline 4.1 8 1 Q glutamine 7.2 14 1 R arginine 5.7 11 1 S serine 4.1 8 1 T threonine 4.1 8 2 V valine 7.2 14 2 W tryptophan 0.5 1 1 Y tyrosine 3.6 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... LOC286528 1.000 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... LOC286528 1.000 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... SSU72 0.812 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... LOC136157 0.643 hypothetical protein LOC136157 PDCD4 0.021 programmed cell death 4 isoform 2 PDCD4 0.021 programmed cell death 4 isoform 1 ARFRP1 0.011 ADP-ribosylation factor related protein 1 isoform b... ARFRP1 0.011 ADP-ribosylation factor related protein 1 isoform a [... KCNK5 0.011 potassium channel, subfamily K, member 5 LOC100288239 0.008 PREDICTED: hypothetical protein XP_002343261 ITIH5 0.008 inter-alpha trypsin inhibitor heavy chain precursor... ITIH5 0.008 inter-alpha trypsin inhibitor heavy chain precursor... CENPF 0.005 centromere protein F Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.