Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 25777742

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25777742 hypothetical protein LOC267002 isoform a [Homo
sapiens]
         (592 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25777742 hypothetical protein LOC267002 isoform a [Homo sapiens]  1217   0.0  
gi|62953123 hypothetical protein LOC267002 isoform b [Homo sapiens]   714   0.0  
gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]    526   e-149
gi|25777744 hypothetical protein LOC267004 [Homo sapiens]             469   e-132
gi|25777746 piggyBac transposable element derived 4 [Homo sapiens]     96   9e-20
gi|25777748 piggyBac transposable element derived 5 [Homo sapiens]     55   1e-07
gi|217330641 IWS1 homolog [Homo sapiens]                               32   1.6  
gi|4503257 death-domain associated protein isoform a [Homo sapiens]    32   2.1  
gi|215422388 death-domain associated protein isoform a [Homo sap...    32   2.1  
gi|215422366 death-domain associated protein isoform b [Homo sap...    32   2.1  
gi|210032580 SET domain containing 1B [Homo sapiens]                   32   2.1  
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     31   3.7  
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]      30   4.8  
gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]                 30   4.8  
gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]                 30   4.8  
gi|168823443 RAD54-like 2 [Homo sapiens]                               30   4.8  
gi|31982899 seven in absentia homolog 2 [Homo sapiens]                 30   8.2  
gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...    30   8.2  

>gi|25777742 hypothetical protein LOC267002 isoform a [Homo sapiens]
          Length = 592

 Score = 1217 bits (3150), Expect = 0.0
 Identities = 592/592 (100%), Positives = 592/592 (100%)

Query: 1   MASTSRDVIAGRGIHSKVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSG 60
           MASTSRDVIAGRGIHSKVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSG
Sbjct: 1   MASTSRDVIAGRGIHSKVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSG 60

Query: 61  DEDSQRGAHLPGSVLHASVLCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPD 120
           DEDSQRGAHLPGSVLHASVLCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPD
Sbjct: 61  DEDSQRGAHLPGSVLHASVLCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPD 120

Query: 121 FGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQELK 180
           FGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQELK
Sbjct: 121 FGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQELK 180

Query: 181 CVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELIFSYLHFADNNELDASD 240
           CVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELIFSYLHFADNNELDASD
Sbjct: 181 CVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELIFSYLHFADNNELDASD 240

Query: 241 RFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGT 300
           RFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGT
Sbjct: 241 RFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGT 300

Query: 301 TSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLM 360
           TSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLM
Sbjct: 301 TSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLM 360

Query: 361 SILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVN 420
           SILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVN
Sbjct: 361 SILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVN 420

Query: 421 ICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGM 480
           ICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGM
Sbjct: 421 ICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGM 480

Query: 481 KWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRR 540
           KWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRR
Sbjct: 481 KWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRR 540

Query: 541 LETESRFDMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR 592
           LETESRFDMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR
Sbjct: 541 LETESRFDMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR 592


>gi|62953123 hypothetical protein LOC267002 isoform b [Homo sapiens]
          Length = 341

 Score =  714 bits (1842), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 252 MNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEP 311
           MNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEP
Sbjct: 1   MNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEP 60

Query: 312 SQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKAT 371
           SQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKAT
Sbjct: 61  SQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKAT 120

Query: 372 GTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPV 431
           GTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPV
Sbjct: 121 GTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPV 180

Query: 432 RLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVI 491
           RLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVI
Sbjct: 181 RLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVI 240

Query: 492 DAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESRFDMIG 551
           DAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESRFDMIG
Sbjct: 241 DAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSRRLETESRFDMIG 300

Query: 552 HWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR 592
           HWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR
Sbjct: 301 HWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR 341


>gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]
          Length = 809

 Score =  526 bits (1354), Expect = e-149
 Identities = 266/505 (52%), Positives = 353/505 (69%), Gaps = 12/505 (2%)

Query: 27  LNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLHASVLCEDSGT 86
           LN +++    +    + I+  + AAG+ T +    +D  R + L    L       DS  
Sbjct: 311 LNTLKDRHPGDLWARMHISSLEYAAGDITRKGR-KKDKARVSEL----LQGLSFSGDSDV 365

Query: 87  GEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPDFGSWTASDPHIEDLKSQELSPVGLFE 146
            +DN+  E+QPA+K+ K    P++ WTKRDI+P+F SW+A D  + +LKS++L+PV LFE
Sbjct: 366 EKDNEP-EIQPAQKKLKVSCFPEKSWTKRDIKPNFPSWSALDSGLLNLKSEKLNPVELFE 424

Query: 147 LFFDEGTINFIVNETNRYAWQKNVNLSLTAQELKCVLGILILSGYISYPRRRMFWETSPD 206
           LFFD+ T N IVNETN YA QKNV+L +T QE++CV G+L+LSG++ +PRR M+WE S D
Sbjct: 425 LFFDDETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLLSGFMRHPRREMYWEVS-D 483

Query: 207 SHHHLVADAIRRDRFELIFSYLHFADNNELDASDRFAKVRPLIIRMNCNFQKHAPLEEFY 266
           +  +LV DAIRRDRFELIFS LHFADN  LD  D+F K+RPLI +MN NF  +APLEE+Y
Sbjct: 484 TDQNLVRDAIRRDRFELIFSNLHFADNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYY 543

Query: 267 SFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEPSQ--GTLFTKPDRSL 324
            F +SMCE F    S Q   GKP+R+GYKIWCGTT++GYLVWFEP Q   T+    D  L
Sbjct: 544 CFDKSMCECFD---SDQFLNGKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDL 600

Query: 325 DLGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYRTERCPL 384
            LGG++V+ F D L ERG  PYH+ FD  FTSVKL+S L+KKGV+ATGT+RE RTE+CPL
Sbjct: 601 GLGGNLVMNFADVLLERGQYPYHLCFDSFFTSVKLLSALKKKGVRATGTIRENRTEKCPL 660

Query: 385 KDPKELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPVRLTSRHSGAAKTR 444
            + + +KKMKRG FD++++E+ EII+CRW+   ++++CSNAVGIEPV   S      +  
Sbjct: 661 MNVEHMKKMKRGYFDFRIEENNEIILCRWYGDGIISLCSNAVGIEPVNEVSCCDADNEEI 720

Query: 445 TQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVIDAALNNAWQLHRI 504
            Q+ QPS+VK+Y E   GV +MDQ I+KY+V+IR  KWYS  + Y+ID A+NNAWQLHR 
Sbjct: 721 PQISQPSIVKVYDECKEGVAKMDQIISKYRVRIRSKKWYSILVSYMIDVAMNNAWQLHRA 780

Query: 505 CCQDAQVDLLAFRRYIACVYLESNA 529
           C   A +D L FRR++A  YLE NA
Sbjct: 781 CNPGASLDPLDFRRFVAHFYLEHNA 805


>gi|25777744 hypothetical protein LOC267004 [Homo sapiens]
          Length = 593

 Score =  469 bits (1207), Expect = e-132
 Identities = 256/595 (43%), Positives = 348/595 (58%), Gaps = 29/595 (4%)

Query: 19  KSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLH-A 77
           ++  L E+ + +E ++S      I I PP+NA    +DE+SGDE+     +LPGS+LH A
Sbjct: 3   RTLSLHEITDLLETDDSIE-ASAIVIQPPENATAPVSDEESGDEEGGTINNLPGSLLHTA 61

Query: 78  SVLCEDSGTGE-DNDDLEL-----------------QPAKKRQKAVVKPQRIWTKRD--I 117
           + L +D    E D+DD                    QP   R++ + K    W K D  +
Sbjct: 62  AYLIQDGSDAESDSDDPSYAPKDDSPDEVPSTFTVQQPPPSRRRKMTKILCKWKKADLTV 121

Query: 118 RPDFGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNETNRYAWQKNVNLSLTAQ 177
           +P  G  TA      D  +   +P  + ELF D+  I  IV  +N YA  K V+L LT+ 
Sbjct: 122 QPVAGRVTAPP---NDFFTVMRTPTEILELFLDDEVIELIVKYSNLYACSKGVHLGLTSS 178

Query: 178 ELKCVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELIFSYLHFADNNELD 237
           E KC LGI+ LSGY+S PRRRMFWE   D H+ LV+ A+RRDRFE IFS LH ADN  LD
Sbjct: 179 EFKCFLGIIFLSGYVSVPRRRMFWEQRTDVHNVLVSAAMRRDRFETIFSNLHVADNANLD 238

Query: 238 ASDRFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIW 297
             D+F+K+RPLI ++N    K  P E ++SF E M  YFG  G KQ  RGKP+R GYK W
Sbjct: 239 PVDKFSKLRPLISKLNERCMKFVPNETYFSFDEFMVPYFGRHGCKQFIRGKPIRFGYKFW 298

Query: 298 CGTTSRGYLVWFEPSQGTLFTKPDRSLDLGGSMVIKFVDALQERGFLPYHIFFDKVFTSV 357
           CG T  GY+ WF+P QG           +G S+V++F +AL E     YH  F+  FTS+
Sbjct: 299 CGATCLGYICWFQPYQGKNPNTKHEEYGVGASLVLQFSEALTEAHPGQYHFVFNNFFTSI 358

Query: 358 KLMSILRKKGVKATGTVREYRTERCPLKDPKELKKMKRGSFDYKVDESEEIIVCRWHDSS 417
            L+  L   G +ATGTVR+   ++ PL+    LKK +RG+FDY++D  +  IVCRW+D+S
Sbjct: 359 ALLDKLSSMGHQATGTVRKDHIDKVPLESDVALKKKERGTFDYRID-GKGNIVCRWNDNS 417

Query: 418 VVNICSNAVGIEPVRLTSRHSGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKI 477
           VV + S+  GI P+ L SR+S   K + QV QP+++K+Y + +GGV R D+NI KY+  I
Sbjct: 418 VVTVASSGAGIHPLCLVSRYSQKLKKKIQVQQPNMIKVYNQFMGGVDRADENIDKYRASI 477

Query: 478 RGMKWYSSFIGYVIDAALNNAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRR 537
           RG KWYSS + +  +  L NAWQLH+    +  VD L FRR + C YLE++      G++
Sbjct: 478 RGKKWYSSPLLFCFELVLQNAWQLHK-TYDEKPVDFLEFRRRVVCHYLETHGHPPEPGQK 536

Query: 538 SR--RLETESRFDMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKCFREYH 590
            R  +   +SR+D I H I+ Q K+TRCA CH  T  RCEKC   +H KC  EYH
Sbjct: 537 GRPQKRNIDSRYDGINHVIVKQGKQTRCAECHKNTTFRCEKCDVALHVKCSVEYH 591


>gi|25777746 piggyBac transposable element derived 4 [Homo sapiens]
          Length = 585

 Score = 95.9 bits (237), Expect = 9e-20
 Identities = 120/518 (23%), Positives = 195/518 (37%), Gaps = 73/518 (14%)

Query: 112 WTKRDIRP----DFGSWTASDPHIEDLKSQELSPVGLFELFFDEGTINFIVNETNRYA-- 165
           W+ R + P    DF         + D+      P+  FELFF E  ++ I  ETN  A  
Sbjct: 75  WSARAMIPRQRYDFTGTPGRKVDVSDITD----PLQYFELFFTEELVSKITRETNAQAAL 130

Query: 166 ----------------WQKNVNLSLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHH 209
                           W+   N      ELK    +++L G +  P   MFW T P    
Sbjct: 131 LASKPPGPKGFSRMDKWKDTDN-----DELKVFFAVMLLQGIVQKPELEMFWSTRPLLDT 185

Query: 210 HLVADAIRRDRFELIFSYLHFADNNELDASDRFA-----KVRPLIIRMNCNFQKHAPLEE 264
             +   +  +RF L+F  LHF +N+ + A    A     K++P+   +   F        
Sbjct: 186 PYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNR 245

Query: 265 FYSFGESMCEYFGHRGSKQLHRGKPVRLGYKIWCGTTSRGYLVWFEPSQGTLFTKPDRSL 324
             +  ES+  + G    KQ    K VR G K++    S+   VW       + T P  +L
Sbjct: 246 NIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVW----NALVHTGPGMNL 301

Query: 325 D------LGGSMVIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYR 378
                      +V+  V+ L  +G   Y +F D    S  L   L +    A GT R  R
Sbjct: 302 KDSADGLKSSRIVLTLVNDLLGQG---YCVFLDNFNISPMLFRELHQNRTDAVGTARLNR 358

Query: 379 TERCPLKDPKELKK-MKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVGIEPVRLTSRH 437
            +      P +LKK + +G+   +     E++  +W D   V + S       + + +R+
Sbjct: 359 KQ-----IPNDLKKRIAKGTTVARF--CGELMALKWCDGKEVTMLSTFHNDTVIEVNNRN 411

Query: 438 SGAAKTRTQVHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMK-WYSSFIGYVIDAALN 496
               K      +P ++  Y E +G V   DQ +  Y  + +  K WY  F  +++   + 
Sbjct: 412 GKKTK------RPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVL 465

Query: 497 NAWQLHRICCQDAQVDLLAFRRYIACVYLESNADTTSQGRRSR---------RLETESRF 547
           N++ L +    +  +  + FR  +    LE +     Q  R R         RL      
Sbjct: 466 NSYILFKKDNPEHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFP 525

Query: 548 DMIGHWIIHQDKRTRCALCHSQTNTRCEKCQKGVHAKC 585
             I      Q+   RC +C SQ +   +K +K     C
Sbjct: 526 KSIPATSGKQNPTGRCKICCSQYDKDGKKIRKETRYFC 563


>gi|25777748 piggyBac transposable element derived 5 [Homo sapiens]
          Length = 554

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 96/478 (20%), Positives = 178/478 (37%), Gaps = 70/478 (14%)

Query: 70  LPGSVLHASVLCEDSGTGEDN--------DDLELQPAKKRQKAVVKPQRIWTKRDIRPDF 121
           LPGS+ H+ +     G G+           DLEL   ++RQ        +W +   RP +
Sbjct: 72  LPGSI-HSCLCGVWCGVGKRTPSSLVSSLQDLELLGQRQRQ--------LWMESTPRPPY 122

Query: 122 GSWTASDPHIEDLKSQELSP----------VGLFELFFDEGTINFIVNETNRYA--WQKN 169
             +      +  L ++   P          V  F+LF  +  +  +V +TN YA  +Q+ 
Sbjct: 123 NPFLVPCTPVGKLSAEHGGPTRKMPPSASAVDFFQLFVPDNVLKNMVVQTNMYAKKFQER 182

Query: 170 VN-----LSLTAQELKCVLGILILSGYISYPRRRMFWETSPDSHHHLVADAIRRDRFELI 224
                  + +T  E+K  LG +I +           W     S+  L A  + + RFE I
Sbjct: 183 FGSDGAWVEVTLTEMKAFLGYMISTSISHCESVLSIWSGGFYSNRSL-ALVMSQARFEKI 241

Query: 225 FSYLHFADNNELDASDRFAKVRPLIIRMNCNFQKHAPLEEFYSFGESMCE----YFGHRG 280
             Y H         +    KV+P +  +  +F       +     E + +    +     
Sbjct: 242 LKYFHVVAFRSSQTTHGLYKVQPFLDSLQNSFDSAFRPSQTQVLHEPLIDEDPVFIATCT 301

Query: 281 SKQLHRGKPVRLGYKIW---CGTTSRGYLVWFEPSQG-------TLFTKPDRSLDLGGSM 330
            ++L + K  +  + +W   C +T     ++    +G        L  KP        SM
Sbjct: 302 ERELRKRK--KRKFSLWVRQCSSTGFIIQIYVHLKEGGGPDGLDALKNKPQLH-----SM 354

Query: 331 VIKFVDALQERGFLPYHIFFDKVFTSVKLMSILRKKGVKATGTVREYRTE--RCPLKD-P 387
           V +     +      Y IF     TS+ L     K+G+   G +R  +++    PL    
Sbjct: 355 VAR--SLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGIYCCGLLRARKSDCTGLPLSMLT 412

Query: 388 KELKKMKRGSFDYKVDESEEIIVCRWHDSSVVNICSNAVG-IEPVRLTSRHSGAAKTRTQ 446
                  RG +  K+  +  +I   W++       +NA   ++   +  R SG      +
Sbjct: 413 NPATPPARGQYQIKMKGNMSLIC--WYNKGHFRFLTNAYSPVQQGVIIKRKSG------E 464

Query: 447 VHQPSLVKLYQEKVGGVGRMDQNIAKYKVKIRGMKWYSSFIGYVIDAALNNAWQLHRI 504
           +  P  V+ +   +  + R D   +KY +  +  K +     + I  A+NNA+ L+++
Sbjct: 465 IPCPLAVEAFAAHLSYICRYDDKYSKYFISHKPNKTWQQVFWFAISIAINNAYILYKM 522


>gi|217330641 IWS1 homolog [Homo sapiens]
          Length = 819

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 32  EEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLHASVLCEDSGTGEDND 91
           +++S++  EE    P  ++  E  ++   D +S+    LPGS      L     +  +N+
Sbjct: 90  QKDSDSESEERAEPPASDSENEDVNQHGSDSESEETRKLPGSDSENEELLNGHASDSENE 149

Query: 92  DLELQPAKKRQKAVVKPQRIWTKRDIRPDFGSWTASDPHIEDLKSQE 138
           D+   PA   +   +       ++    D  +  A  P I D +S+E
Sbjct: 150 DVGKHPASDSEIEEL-------QKSPASDSETEDALKPQISDSESEE 189


>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
          Length = 740

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 376 EYRTERCPLKDPKELKKMKRGSFD-YKVDESEEIIVCRWHDSSVVNIC--SNAVGIEPVR 432
           E   E    ++ ++L++M+ G  D  + DE EE    +  D S ++    SN   +EP +
Sbjct: 453 EEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 512

Query: 433 LTSRHSGAAKTRTQVHQPSLV 453
             SR SG  + + ++  PSL+
Sbjct: 513 QISRSSGEQQNKGRIVSPSLL 533


>gi|215422388 death-domain associated protein isoform a [Homo
           sapiens]
          Length = 740

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 376 EYRTERCPLKDPKELKKMKRGSFD-YKVDESEEIIVCRWHDSSVVNIC--SNAVGIEPVR 432
           E   E    ++ ++L++M+ G  D  + DE EE    +  D S ++    SN   +EP +
Sbjct: 453 EEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 512

Query: 433 LTSRHSGAAKTRTQVHQPSLV 453
             SR SG  + + ++  PSL+
Sbjct: 513 QISRSSGEQQNKGRIVSPSLL 533


>gi|215422366 death-domain associated protein isoform b [Homo
           sapiens]
          Length = 752

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 376 EYRTERCPLKDPKELKKMKRGSFD-YKVDESEEIIVCRWHDSSVVNIC--SNAVGIEPVR 432
           E   E    ++ ++L++M+ G  D  + DE EE    +  D S ++    SN   +EP +
Sbjct: 465 EEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 524

Query: 433 LTSRHSGAAKTRTQVHQPSLV 453
             SR SG  + + ++  PSL+
Sbjct: 525 QISRSSGEQQNKGRIVSPSLL 545


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/76 (22%), Positives = 34/76 (44%)

Query: 31   EEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLHASVLCEDSGTGEDN 90
            ++++ +++R+E      D A  E +++D GD D +    +  S   A+   E S + E  
Sbjct: 1063 DDDDDSDDRDESENDDEDTALSEASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFE 1122

Query: 91   DDLELQPAKKRQKAVV 106
               E  P+    +  V
Sbjct: 1123 SSSESSPSSSEDEEEV 1138


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 17  KVKSAKLLEVLNAMEEEESNNNREEIFIAPPDNAAGEFTDEDSGDEDSQRGAHLPGSVLH 76
           K +  K  E     EEEE     EE  I   +   GE  DE+  DED   G   P     
Sbjct: 383 KEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDED---GGQKPEGEPQ 439

Query: 77  ASVLCEDSGTGEDNDDLELQPAKKRQ 102
                +D GT E   ++E +P  + Q
Sbjct: 440 -----QDPGTEETYGEVEEEPLDEAQ 460


>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
          Length = 440

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 559 KRTRCALCHSQTNTRCEKCQKGVHAKCFREYHIR 592
           +R RCA C ++ + RC +CQ   +  C RE  ++
Sbjct: 390 ERPRCAYCSAEASKRCSRCQNEWY--CCRECQVK 421


>gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]
          Length = 527

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 80  LCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTK 114
           LCE SG+G+D+DDL L   K  Q       R  T+
Sbjct: 368 LCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTR 402


>gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]
          Length = 561

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 80  LCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTK 114
           LCE SG+G+D+DDL L   K  Q       R  T+
Sbjct: 368 LCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTR 402


>gi|168823443 RAD54-like 2 [Homo sapiens]
          Length = 1467

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 12  RGIHSKVKSAKLLEVLNAMEEEESNNNRE-----EIFIAPPDNAAGEFTDEDSGDEDSQR 66
           R I   ++  +L  V  A ++EE    +      + + AP      EF  E+     S  
Sbjct: 111 RNIRKLLREDQLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRASD- 169

Query: 67  GAHLPGSVLHASVLCEDSGTGEDND 91
           G  LP  VL   V+C DS +G +++
Sbjct: 170 GPQLPPRVLAQEVICLDSSSGSEDE 194


>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
          Length = 324

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 196 RRRMFWETSPDSHHHLVADAIRRDR---FELIFSYLHFADNNEL 236
           RRR+ WE +P S H  VA AI       F+   ++L FADN  L
Sbjct: 271 RRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHL-FADNGNL 313


>gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1
           [Homo sapiens]
          Length = 812

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 78  SVLCEDSGTGEDNDDLELQPAKKRQKAVVKPQRIWTKRDIRPDFGSWTASDPH---IEDL 134
           S L E+  + +D+ + E +  K + K   KP+     +D   ++   T  D H   I  L
Sbjct: 98  SSLQEEDKSRKDDSEREKEKDKNKDKTSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTL 157

Query: 135 KSQELSPVGLFELFFDEGTINFIVNETNRY 164
           K+     + L ++  ++  I+FI +  N Y
Sbjct: 158 KNNSRDRMILLKM--EQEIIDFIADNNNHY 185


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,745,168
Number of Sequences: 37866
Number of extensions: 1038205
Number of successful extensions: 2590
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2563
Number of HSP's gapped (non-prelim): 22
length of query: 592
length of database: 18,247,518
effective HSP length: 108
effective length of query: 484
effective length of database: 14,157,990
effective search space: 6852467160
effective search space used: 6852467160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press