Guide to the Human Genome
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Name: IVNS1ABP Sequence: fasta or formatted (642aa) NCBI GI: 24475847
Description:

influenza virus NS1A binding protein

Referenced in:

Kelch Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         38           2
 C cysteine            3.4         22           2
 D aspartate           5.5         35           3
 E glutamate           6.7         43           4
 F phenylalanine       3.4         22           1
 G glycine             7.3         47           2
 H histidine           2.3         15           1
 I isoleucine          4.2         27           2
 K lysine              5.1         33           2
 L leucine             9.7         62           2
 M methionine          3.3         21           2
 N asparagine          6.7         43           2
 P proline             4.4         28           2
 Q glutamine           3.4         22           2
 R arginine            4.0         26           2
 S serine              8.1         52           4
 T threonine           4.0         26           1
 V valine              6.9         44           2
 W tryptophan          1.6         10           1
 Y tyrosine            4.0         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   influenza virus NS1A binding protein 
KLHL17                0.179   kelch-like 17 
KLHL1                 0.176   kelch-like 1 protein 
KLHL20                0.176   kelch-like 20 
KLHL5                 0.174   kelch-like 5 isoform 3 
KLHL5                 0.174   kelch-like 5 isoform 1 
KLHL2                 0.174   kelch-like 2, Mayven isoform 2 
KLHL2                 0.174   kelch-like 2, Mayven isoform 1 
KLHL4                 0.174   kelch-like 4 isoform 1 
KLHL4                 0.173   kelch-like 4 isoform 2 
KLHL3                 0.172   kelch-like 3 
KLHL5                 0.162   kelch-like 5 isoform 2 
KLHL8                 0.148   kelch-like 8 
KLHL2                 0.148   kelch-like 2, Mayven isoform 3 
KLHL12                0.141   kelch-like 12 
KEAP1                 0.140   kelch-like ECH-associated protein 1 
KEAP1                 0.140   kelch-like ECH-associated protein 1 
KLHL28                0.137   BTB (POZ) domain containing 5 
KLHL10                0.113   kelch-like 10 
KLHL18                0.108   kelch-like 18 
KLHL31                0.099   kelch repeat and BTB (POZ) domain containing 1 [Homo...
IPP                   0.098   intracisternal A particle-promoted polypeptide isofor...
KLHL7                 0.096   kelch-like 7 isoform 1 
KLHL26                0.096   kelch-like 26 
ENC1                  0.095   ectodermal-neural cortex (with BTB-like domain) [Homo...
KLHL30                0.094   kelch-like 30 
GAN                   0.093   gigaxonin 
KLHL29                0.093   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.093   PREDICTED: kelch repeat and BTB (POZ) domain contai...
KLHL7                 0.091   kelch-like 7 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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