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Search of human proteins with 24308165
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308165 transmembrane protein 55A [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308165 transmembrane protein 55A [Homo sapiens] 546 e-156
gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens] 295 3e-80
gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens] 292 2e-79
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 31 0.93
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 31 0.93
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 31 0.93
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 31 0.93
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 31 0.93
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 31 1.2
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 31 1.2
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 31 1.2
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 31 1.2
gi|7705881 zinc finger protein 580 [Homo sapiens] 30 1.6
gi|46361970 zinc finger protein 580 [Homo sapiens] 30 1.6
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 30 2.1
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 30 2.1
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 30 2.1
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 30 2.1
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 30 2.1
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 30 2.1
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 30 2.7
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 30 2.7
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 29 3.5
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 29 3.5
gi|28315873 zinc finger protein 57 [Homo sapiens] 29 3.5
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 29 3.5
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 29 3.5
gi|148276998 zinc finger protein 628 [Homo sapiens] 29 3.5
gi|67003568 skin-specific protein 32 [Homo sapiens] 29 4.6
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 29 4.6
>gi|24308165 transmembrane protein 55A [Homo sapiens]
Length = 257
Score = 546 bits (1406), Expect = e-156
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MAADGVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRV 60
MAADGVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRV
Sbjct: 1 MAADGVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRV 60
Query: 61 CQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPN 120
CQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPN
Sbjct: 61 CQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPN 120
Query: 121 CRRIINLGPVMLISEEQPAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKI 180
CRRIINLGPVMLISEEQPAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKI
Sbjct: 121 CRRIINLGPVMLISEEQPAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKI 180
Query: 181 SSVGSALPRRRCCAYITIGMICIFIGVGLTVGTPDFARRFRATYVSWAIAYLLGLICLIR 240
SSVGSALPRRRCCAYITIGMICIFIGVGLTVGTPDFARRFRATYVSWAIAYLLGLICLIR
Sbjct: 181 SSVGSALPRRRCCAYITIGMICIFIGVGLTVGTPDFARRFRATYVSWAIAYLLGLICLIR 240
Query: 241 ACYWGAIRVSYPEHSFA 257
ACYWGAIRVSYPEHSFA
Sbjct: 241 ACYWGAIRVSYPEHSFA 257
>gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens]
Length = 277
Score = 295 bits (754), Expect = 3e-80
Identities = 148/285 (51%), Positives = 178/285 (62%), Gaps = 36/285 (12%)
Query: 1 MAADGVDERSPLLS-------------------ASHSGNVTPTAPPY------LQESSPR 35
MAADG ERSPLLS A G +TP+APPY E P
Sbjct: 1 MAADG--ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPA 58
Query: 36 A---ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPT 92
E PPPY+ + SPD+ P+I CRVCQSLIN++GK+HQHVVKC VCNEATPIKN P
Sbjct: 59 VLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPP 118
Query: 93 GKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV 152
GKKYVRCPCNCLLICK TS+RI CPRP C+RIINLGPV P + QP G RV
Sbjct: 119 GKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPV------HPGPLSPEPQPMGVRV 172
Query: 153 VCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYITIGMICIFIGVGLTVG 212
+CGHC NTFLW E TLA+CPHC+K+SS+G PR+RC +G++ GL G
Sbjct: 173 ICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFG 232
Query: 213 TPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA 257
T ARR+ Y +WA LL ++CL RA YW ++VS+P +F+
Sbjct: 233 TWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
>gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens]
Length = 284
Score = 292 bits (747), Expect = 2e-79
Identities = 148/292 (50%), Positives = 181/292 (61%), Gaps = 43/292 (14%)
Query: 1 MAADGVDERSPLLS-------------------ASHSGNVTPTAPPYL--QESSPRA--- 36
MAADG ERSPLLS A G +TP+APPY + + P+A
Sbjct: 1 MAADG--ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPP 58
Query: 37 -----------ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEAT 85
E PPPY+ + SPD+ P+I CRVCQSLIN++GK+HQHVVKC VCNEAT
Sbjct: 59 FPEGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEAT 118
Query: 86 PIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPI 145
PIKN P GKKYVRCPCNCLLICK TS+RI CPRP C+RIINLGPV P +
Sbjct: 119 PIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPV------HPGPLSPEP 172
Query: 146 QPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYITIGMICIFI 205
QP G RV+CGHC NTFLW E TLA+CPHC+K+SS+G PR+RC +G++
Sbjct: 173 QPMGVRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVT 232
Query: 206 GVGLTVGTPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA 257
GL GT ARR+ Y +WA LL ++CL RA YW ++VS+P +F+
Sbjct: 233 ATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 31.2 bits (69), Expect = 0.93
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 56 INCRVCQSLINLDGKLHQHVVKCTVCNEA---TPIKNPPTGKKYVRCPCNCLLIC----K 108
I C C ++ +LH+H++ C ++ TP KNP K+ V+ P N +++ K
Sbjct: 1132 IRCTKCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQ-PKNGVVVLDNSGK 1190
Query: 109 DTSRRIGCPR 118
+ RR+G P+
Sbjct: 1191 NAFRRMGQPK 1200
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 31.2 bits (69), Expect = 0.93
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 56 INCRVCQSLINLDGKLHQHVVKCTVCNEA---TPIKNPPTGKKYVRCPCNCLLIC----K 108
I C C ++ +LH+H++ C ++ TP KNP K+ V+ P N +++ K
Sbjct: 1333 IRCTKCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQ-PKNGVVVLDNSGK 1391
Query: 109 DTSRRIGCPR 118
+ RR+G P+
Sbjct: 1392 NAFRRMGQPK 1401
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 31.2 bits (69), Expect = 0.93
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 56 INCRVCQSLINLDGKLHQHVVKCTVCNEA---TPIKNPPTGKKYVRCPCNCLLIC----K 108
I C C ++ +LH+H++ C ++ TP KNP K+ V+ P N +++ K
Sbjct: 1333 IRCTKCGKGVDNMPELHKHILACASASDKKRYTPKKNPVPLKQTVQ-PKNGVVVLDNSGK 1391
Query: 109 DTSRRIGCPR 118
+ RR+G P+
Sbjct: 1392 NAFRRMGQPK 1401
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 0.93
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 11 PLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGI-PVINC 58
P ++A + P PP L SP ELPPP A AS + P +C
Sbjct: 747 PRVAAKTHERLLPQGPPELPSESPPPELPPPEAAPPVLPASSLQPPCHC 795
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 31.2 bits (69), Expect = 0.93
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 10 SPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVIN 57
SP LS S TP P L +SP A PPP T S ASG +++
Sbjct: 841 SPRLSPGPS---TPPGAPTLPLASPGAPQPPPVTPERSFSASGAQIVS 885
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 30.8 bits (68), Expect = 1.2
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 24 TAPPYLQESSPRAELPPPYTAIASP---DASGIP--------VINCRVCQSLINLDGKLH 72
TAPP Q S A LPPPY I P + GI +IN CQS + H
Sbjct: 144 TAPPSTQADSSSATLPPPYQLINVPPHLETLGIQEDPQDYLLLIN---CQSKKPEPTRTH 200
Query: 73 QHVVKCTV----CNEATPI-KNPPTGK 94
K T CN+ P KNP + +
Sbjct: 201 ADSAKSTSSETDCNDNVPSHKNPASSQ 227
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 30.8 bits (68), Expect = 1.2
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 24 TAPPYLQESSPRAELPPPYTAIASP---DASGIP--------VINCRVCQSLINLDGKLH 72
TAPP Q S A LPPPY I P + GI +IN CQS + H
Sbjct: 144 TAPPSTQADSSSATLPPPYQLINVPPHLETLGIQEDPQDYLLLIN---CQSKKPEPTRTH 200
Query: 73 QHVVKCTV----CNEATPI-KNPPTGK 94
K T CN+ P KNP + +
Sbjct: 201 ADSAKSTSSETDCNDNVPSHKNPASSQ 227
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 9 RSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASP 48
R L SH G +TP +L R LPPP TA SP
Sbjct: 218 RPGFLPPSHRGLLTPRRRGFLPPPRHRGFLPPPATAAFSP 257
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 30.8 bits (68), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 18 SGNVTPTAPPYLQESSPRAELPPP 41
+G + P PP+ Q+ +P+A LPPP
Sbjct: 194 TGLLPPPPPPHRQDGAPKAPLPPP 217
>gi|7705881 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 30.4 bits (67), Expect = 1.6
Identities = 35/148 (23%), Positives = 47/148 (31%), Gaps = 32/148 (21%)
Query: 23 PTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRVC---------QSLINLDGKLHQ 73
P PP+ + SSP A PPP A P A G LI+ +G +
Sbjct: 5 PPRPPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTPSSAAGPRPPRLGRHLLIDANGVPYT 64
Query: 74 HVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLI 133
+ V+ P + P G+ R +C P C R+ P+ L
Sbjct: 65 YTVQLEEEPRGPPQREAPPGEPGPRKGYSC---------------PECARVF-ASPLRLQ 108
Query: 134 SEEQPAQPALPIQPEGTRVVCGHCGNTF 161
S P CG CG F
Sbjct: 109 SHRVSHSDLKPF-------TCGACGKAF 129
>gi|46361970 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 30.4 bits (67), Expect = 1.6
Identities = 35/148 (23%), Positives = 47/148 (31%), Gaps = 32/148 (21%)
Query: 23 PTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRVC---------QSLINLDGKLHQ 73
P PP+ + SSP A PPP A P A G LI+ +G +
Sbjct: 5 PPRPPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTPSSAAGPRPPRLGRHLLIDANGVPYT 64
Query: 74 HVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLI 133
+ V+ P + P G+ R +C P C R+ P+ L
Sbjct: 65 YTVQLEEEPRGPPQREAPPGEPGPRKGYSC---------------PECARVF-ASPLRLQ 108
Query: 134 SEEQPAQPALPIQPEGTRVVCGHCGNTF 161
S P CG CG F
Sbjct: 109 SHRVSHSDLKPF-------TCGACGKAF 129
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 30.0 bits (66), Expect = 2.1
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 7 DERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDAS-GIPVINCRVCQSLI 65
D+ S +S N PP Q +P P +++ A+ +S P +C + +
Sbjct: 79 DDESLSVSKPLVPNAALLGPP-AQVGAPAGPAPVAFSSSAATSSSTSTPTSSCSMTAA-- 135
Query: 66 NLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKD----TSRRIGC-PRPN 120
+ G V A TG CPC C C D RR GC P P
Sbjct: 136 DFGGGAAAGAVGGPGSRSAGGAGGTGTGSGASCCPCCCCCGCPDRPGRRGRRRGCAPSPR 195
Query: 121 CR 122
CR
Sbjct: 196 CR 197
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 30.0 bits (66), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 22 TPTAPPYLQESSPRAELPPPYTAIASPDASGIPV 55
TP A P+ SP+ ELPP ++ +P P+
Sbjct: 198 TPRAEPFSANGSPQTELPPTELSVHTPSPQAEPL 231
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 128 GPVMLISEEQPAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCK 178
GP+ + EE P PA P++ + +C C T EL + + H +
Sbjct: 157 GPLRPMEEELPPPPAEPVEKGASTDICAFCHKTVSPRELAVEAMKRQYHAQ 207
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 128 GPVMLISEEQPAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCK 178
GP+ + EE P PA P++ + +C C T EL + + H +
Sbjct: 157 GPLRPMEEELPPPPAEPVEKGASTDICAFCHKTVSPRELAVEAMKRQYHAQ 207
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 30.0 bits (66), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 22 TPTAPPYLQESSPRAELPPPYTAIASPDASGIPV 55
TP A P+ SP+ ELPP ++ +P P+
Sbjct: 198 TPRAEPFSANGSPQTELPPTELSVHTPSPQAEPL 231
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 30.0 bits (66), Expect = 2.1
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 9 RSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVI 56
R L S G P PP + SPR E PPP SP A PV+
Sbjct: 1360 RERALKESSEGGGAPQPPP--RPPSPRYEAPPPTPHHHSPHAHHEPVL 1405
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 29.6 bits (65), Expect = 2.7
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 36 AELPPPYTA-IASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGK 94
AELPPPY A + P AS + I +V +S T +TP+ T
Sbjct: 292 AELPPPYEAVVGQPPASQVTSIGQQVAESSSGDPN---------TSAGFSTPVPADSTS- 341
Query: 95 KYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPE 148
LL+ + T+ P P+ GPV + +PA P + PE
Sbjct: 342 ---------LLVSEGTATPGSSPSPD-------GPVGAPAPSEPALPPGHVSPE 379
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 GVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIP 54
GV +SP + A+ GN+ P+A P +P LPP TA + + +P
Sbjct: 1103 GVAAQSPAIVAAVQGNLLPSASPLPDPGTP---LPPDPTAPSPGTVTPVP 1149
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 29.3 bits (64), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 7 DERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTA 44
D +P++ +S + N T T ++ R E PPP+ A
Sbjct: 746 DRNNPVIQSSTTTNTTTTTTTTTSNTTHRVETPPPHQA 783
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 29.3 bits (64), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 7 DERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTA 44
D +P++ +S + N T T ++ R E PPP+ A
Sbjct: 746 DRNNPVIQSSTTTNTTTTTTTTTSNTTHRVETPPPHQA 783
>gi|28315873 zinc finger protein 57 [Homo sapiens]
Length = 555
Score = 29.3 bits (64), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 154 CGHCGNTFLWME-----LRFNT---LAKCPHCKK 179
C CG TF W E +R +T L KC HC K
Sbjct: 310 CKQCGKTFSWSETLRVHMRIHTGDKLYKCEHCGK 343
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 29.3 bits (64), Expect = 3.5
Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 26/163 (15%)
Query: 6 VDERSP-LLSASHS--GNVTPTAPPYLQESSPR---AELPPPYTAIASPDASGIP----- 54
+ R+P LL HS P YL +P AE PPP A SP + P
Sbjct: 63 IQSRAPKLLPCLHSFCQRCLPAPQRYLMLPAPMLGSAETPPPVPAPGSPVSGSSPFATQV 122
Query: 55 -VINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRR 113
VI C VC +H++ + T + + K C C+D +
Sbjct: 123 GVIRCPVCSQEC-----AERHIIDNFFVKDTTEVPSSTVEKSNQVCTS-----CEDNAEA 172
Query: 114 IG----CPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV 152
G C C+ I + +++ + + PE V
Sbjct: 173 NGFCVECVEWLCKTCIRAHQRVKFTKDHTVRQKEEVSPEAVGV 215
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 29.3 bits (64), Expect = 3.5
Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 26/163 (15%)
Query: 6 VDERSP-LLSASHS--GNVTPTAPPYLQESSPR---AELPPPYTAIASPDASGIP----- 54
+ R+P LL HS P YL +P AE PPP A SP + P
Sbjct: 63 IQSRAPKLLPCLHSFCQRCLPAPQRYLMLPAPMLGSAETPPPVPAPGSPVSGSSPFATQV 122
Query: 55 -VINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRR 113
VI C VC +H++ + T + + K C C+D +
Sbjct: 123 GVIRCPVCSQEC-----AERHIIDNFFVKDTTEVPSSTVEKSNQVCTS-----CEDNAEA 172
Query: 114 IG----CPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV 152
G C C+ I + +++ + + PE V
Sbjct: 173 NGFCVECVEWLCKTCIRAHQRVKFTKDHTVRQKEEVSPEAVGV 215
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 29.3 bits (64), Expect = 3.5
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 138 PAQPALPIQPEGTRVVCGHCGNTFLWMELRFNTLA--------KCPHCKKISSVGSAL 187
PA PA Q E CG CG +F W + KCP C K SAL
Sbjct: 23 PAAPAPAAQYE-----CGECGKSFRWSSRLLHHQRTHTGERPYKCPDCPKAFKGSSAL 75
Score = 28.5 bits (62), Expect = 6.0
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 153 VCGHCGNTFLW-----MELRFNTLAK---CPHCKKISSVGSALPRRR 191
+CG CG F W LR +T + CP C K S+L R R
Sbjct: 117 ICGQCGLAFKWSSHYQYHLRQHTGERPYPCPDCPKAFKNSSSLRRHR 163
>gi|67003568 skin-specific protein 32 [Homo sapiens]
Length = 250
Score = 28.9 bits (63), Expect = 4.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 73 QHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRP 119
Q VKC + T +K P + YV+CP C + + CP P
Sbjct: 65 QTYVKCPAPCQRTYVKYPTPCQTYVKCPAPC------QTTYVKCPTP 105
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma
[Homo sapiens]
Length = 546
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 53 IPVINCRVCQSLINLDGKLHQHVVKC--TVCNEATPIKNPPTGKKYVRCP 100
+ V+ C VC+ + +L G ++ C TVC++ + P + +RCP
Sbjct: 26 VKVLECGVCEDVFSLQGDKVPRLLLCGHTVCHDC--LTRLPLHGRAIRCP 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,245,030
Number of Sequences: 37866
Number of extensions: 629760
Number of successful extensions: 3450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3411
Number of HSP's gapped (non-prelim): 68
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.