Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132670 Sequence: fasta or formatted (181aa) NCBI GI: 239758169
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {181aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         19           1
 C cysteine            6.1         11           1
 D aspartate           1.1          2           1
 E glutamate           0.6          1           1
 F phenylalanine       2.2          4           1
 G glycine             5.0          9           1
 H histidine           2.2          4           1
 I isoleucine          0.6          1           1
 K lysine              0.6          1           1
 L leucine            22.1         40           3
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline            24.3         44           2
 Q glutamine           0.0          0           0
 R arginine            1.1          2           1
 S serine              6.6         12           1
 T threonine           3.9          7           1
 V valine              3.3          6           1
 W tryptophan          7.2         13           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132670          0.964   PREDICTED: hypothetical protein 
LOC100132263          0.964   PREDICTED: hypothetical protein 
LOC100132790          0.964   PREDICTED: hypothetical protein 
LOC100132351          0.931   PREDICTED: hypothetical protein 
LOC100132427          0.928   PREDICTED: hypothetical protein 
LOC100289460          0.908   PREDICTED: hypothetical protein XP_002343919 
LOC100130655          0.146   PREDICTED: hypothetical protein 
FMN2                  0.056   formin 2 
SRCAP                 0.056   Snf2-related CBP activator protein 
MAPK1IP1L             0.041   MAPK-interacting and spindle-stabilizing protein [Ho...
PER1                  0.036   period 1 
EPN1                  0.036   epsin 1 isoform c 
EPN1                  0.036   epsin 1 isoform b 
EPN1                  0.036   epsin 1 isoform a 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
BCORL1                0.031   BCL6 co-repressor-like 1 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
PTPN23                0.028   protein tyrosine phosphatase, non-receptor type 23 [...
DMRTC2                0.028   DMRT-like family C2 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
WBP11                 0.028   WW domain binding protein 11 
MAPK7                 0.026   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.026   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.026   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.026   mitogen-activated protein kinase 7 isoform 2 
LOC100290470          0.026   PREDICTED: hypothetical protein XP_002347617 
LOC100287301          0.026   PREDICTED: hypothetical protein XP_002343447 
C13orf23              0.026   hypothetical protein LOC80209 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press