Guide to the Human Genome
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Name: LOC100134444 Sequence: fasta or formatted (433aa) NCBI GI: 239758082
Description:

PREDICTED: similar to thyrotoxic periodic paralysis susceptibility ion channel

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         35           2
 C cysteine            2.3         10           1
 D aspartate           6.0         26           2
 E glutamate           7.2         31           2
 F phenylalanine       5.8         25           1
 G glycine             6.9         30           3
 H histidine           3.2         14           1
 I isoleucine          6.5         28           2
 K lysine              3.7         16           2
 L leucine             9.0         39           2
 M methionine          3.2         14           1
 N asparagine          3.2         14           1
 P proline             3.2         14           1
 Q glutamine           3.2         14           1
 R arginine            7.2         31           3
 S serine              6.0         26           2
 T threonine           4.4         19           2
 V valine              7.2         31           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to thyrotoxic periodic paralysis... 
KCNJ12                0.980   potassium inwardly-rectifying channel, subfamily J, ...
LOC100131509          0.932   PREDICTED: similar to inward rectifying K+ channel ...
LOC100131509          0.932   PREDICTED: similar to inward rectifying K+ channel ...
LOC100290070          0.932   PREDICTED: hypothetical protein XP_002347768 
KCNJ2                 0.691   potassium inwardly-rectifying channel J2 
KCNJ4                 0.613   potassium inwardly-rectifying channel J4 
KCNJ4                 0.613   potassium inwardly-rectifying channel J4 
KCNJ14                0.537   potassium inwardly-rectifying channel J14 
KCNJ14                0.537   potassium inwardly-rectifying channel J14 
KCNJ9                 0.429   potassium inwardly-rectifying channel subfamily J9 [...
KCNJ5                 0.421   potassium inwardly-rectifying channel J5 
KCNJ6                 0.412   potassium inwardly-rectifying channel J6 
KCNJ3                 0.401   potassium inwardly-rectifying channel J3 
KCNJ11                0.368   potassium inwardly-rectifying channel J11 
KCNJ8                 0.357   potassium inwardly-rectifying channel J8 
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform a [H...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b ...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ16                0.337   potassium inwardly-rectifying channel J16 
KCNJ16                0.337   potassium inwardly-rectifying channel J16 
KCNJ16                0.337   potassium inwardly-rectifying channel J16 
KCNJ15                0.301   potassium inwardly-rectifying channel J15 
KCNJ15                0.301   potassium inwardly-rectifying channel J15 
KCNJ15                0.301   potassium inwardly-rectifying channel J15 
KCNJ10                0.298   potassium inwardly-rectifying channel, subfamily J, ...
KCNJ13                0.190   potassium inwardly-rectifying channel J13 
STYXL1                0.008   map kinase phosphatase-like protein MK-STYX 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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