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Search of human proteins with 239757633
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens] 282 5e-77
gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens] 278 1e-75
gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens] 278 1e-75
gi|46094070 hypothetical protein LOC80097 [Homo sapiens] 137 2e-33
gi|145976946 hypothetical protein LOC653784 [Homo sapiens] 134 3e-32
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 35 0.020
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 35 0.020
gi|148746220 spermatogenesis associated, serine-rich 2 [Homo sap... 32 0.22
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 32 0.22
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 32 0.22
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 31 0.28
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 30 0.63
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 30 0.63
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 30 0.63
gi|24308069 zinc finger protein 521 [Homo sapiens] 29 1.1
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 28 1.8
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 28 1.8
gi|188536004 zinc finger protein 469 [Homo sapiens] 28 1.8
gi|46094081 development and differentiation enhancing factor 1 [... 28 1.8
gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens] 28 1.8
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|124107614 PR domain containing 13 [Homo sapiens] 28 3.1
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 27 4.1
gi|189491748 ataxin 1 [Homo sapiens] 27 4.1
gi|51479158 ataxin 1 [Homo sapiens] 27 4.1
gi|239752961 PREDICTED: hypothetical protein [Homo sapiens] 27 4.1
gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo ... 27 4.1
>gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 282 bits (722), Expect = 5e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 278 bits (710), Expect = 1e-75
Identities = 136/138 (98%), Positives = 136/138 (98%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPE GRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 278 bits (710), Expect = 1e-75
Identities = 136/138 (98%), Positives = 136/138 (98%)
Query: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA
Sbjct: 1 MLRKYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCA 60
Query: 61 GQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
GQRMASEPQDSAAVSLHTTSVPE GRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT
Sbjct: 61 GQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
Query: 121 RLPKWGGPGRRQQVRGST 138
RLPKWGGPGRRQQVRGST
Sbjct: 121 RLPKWGGPGRRQQVRGST 138
>gi|46094070 hypothetical protein LOC80097 [Homo sapiens]
Length = 158
Score = 137 bits (346), Expect = 2e-33
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALL 101
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPET GRNK S +LG AL
Sbjct: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALA 122
Query: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
E S R+GSSQR PRQPSATRLPK GGPG + RGST
Sbjct: 123 ERSSREGSSQRMPRQPSATRLPKGGGPG-KSPTRGST 158
>gi|145976946 hypothetical protein LOC653784 [Homo sapiens]
Length = 158
Score = 134 bits (336), Expect = 3e-32
Identities = 71/97 (73%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALL 101
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPET GR+K S +LG V AL
Sbjct: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRDKGSAALGGVLALA 122
Query: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
E S +GSSQR PRQPSATRLPK GGPG + +GST
Sbjct: 123 ERSNHEGSSQRMPRQPSATRLPKGGGPG-KSPTQGST 158
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 35.0 bits (79), Expect = 0.020
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 64 MASEPQDSAAVSLHTTSVPETTGRNKDSTSLGR--VPAL------------LECSGRKGS 109
+AS QD+ A L + P R + SL R +PAL GRKGS
Sbjct: 179 LASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPVPSPAPGRKGS 238
Query: 110 SQRTPRQPSATRLPKWGGP 128
Q P P RLP +GGP
Sbjct: 239 IQDRPLPPPPPRLPGYGGP 257
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 35.0 bits (79), Expect = 0.020
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 64 MASEPQDSAAVSLHTTSVPETTGRNKDSTSLGR--VPAL------------LECSGRKGS 109
+AS QD+ A L + P R + SL R +PAL GRKGS
Sbjct: 272 LASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPVPSPAPGRKGS 331
Query: 110 SQRTPRQPSATRLPKWGGP 128
Q P P RLP +GGP
Sbjct: 332 IQDRPLPPPPPRLPGYGGP 350
>gi|148746220 spermatogenesis associated, serine-rich 2 [Homo
sapiens]
Length = 545
Score = 31.6 bits (70), Expect = 0.22
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 66 SEPQDSAAVSLHT-TSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSATRLP- 123
S P D++A S T S P T NK + + G PA + +S P QP LP
Sbjct: 393 SSPSDASAASSSTCASPPSLTSANKKNFAPGETPAAI------ANSSGQPYQPLREVLPG 446
Query: 124 -KWGGPGRRQQ 133
+ GG G R Q
Sbjct: 447 NRRGGQGYRPQ 457
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 31.6 bits (70), Expect = 0.22
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 9 YYSYVDAESKGQSPEDSWKH-HSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQRMASE 67
Y + E +G+ PE +++H S + HS Q ++Q +A A +G R S
Sbjct: 220 YRDDITREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSS 279
Query: 68 PQDSAAVSLHTTSVPETTGRNKDSTSLGR 96
DS + S T+S + + S R
Sbjct: 280 SSDSISSSSSTSSDSSDSSSSSSDDSPAR 308
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 31.6 bits (70), Expect = 0.22
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 58 MCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRV-PALLECSGRKGSSQRTPRQ 116
+CAG P A ++ T RNK+ + + P+++ GS+ R P +
Sbjct: 218 VCAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPER 277
Query: 117 PSATRLPKWGGPGRRQQ 133
P + P PGR Q
Sbjct: 278 PGPSNPPVGPAPGRHPQ 294
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 31.2 bits (69), Expect = 0.28
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 4 KYGGSYYSYVDAESKGQSPEDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQR 63
+YGGS+YS S G S ++HS +HS S R
Sbjct: 184 RYGGSHYS-----SSGYSNSRYSRYHSSRSHSKSGSS-------------------TSSR 219
Query: 64 MASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGS-SQRTPRQP 117
AS + S+A ++SV + R++ S+ P + + + S S+R P+ P
Sbjct: 220 SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 58 MCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGS---SQRTP 114
M +G++ A+ +AA + T + P T G +++ + + PA L G +RTP
Sbjct: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
Query: 115 RQPSATRLPKWGG 127
R+ R GG
Sbjct: 61 RKKEPPRASPPGG 73
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 58 MCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGS---SQRTP 114
M +G++ A+ +AA + T + P T G +++ + + PA L G +RTP
Sbjct: 1 MLSGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTP 60
Query: 115 RQPSATRLPKWGG 127
R+ R GG
Sbjct: 61 RKKEPPRASPPGG 73
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 30.0 bits (66), Expect = 0.63
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 95 GRVPAL-LECSGRKGSSQRTPRQPSATRLPKWGGPG 129
G P L L G GS TP + SA R P+ GGPG
Sbjct: 403 GAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPG 438
>gi|24308069 zinc finger protein 521 [Homo sapiens]
Length = 1311
Score = 29.3 bits (64), Expect = 1.1
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 23 EDSWKHHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHT---T 79
E S +H HSG+ ++ + + L S + S + SL T T
Sbjct: 293 ETSLMNHMEQVHSGEKKNSCSICSESFHTVEELYSHMDSHQQPESCNHSNSPSLVTVGYT 352
Query: 80 SVPETTGRNK----DSTSLGRVPALLECSGRKGSSQRTP 114
SV TT + ST + P + + GRK ++Q+TP
Sbjct: 353 SVSSTTPDSNLSVDSSTMVEAAPPIPKSRGRKRAAQQTP 391
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 28.5 bits (62), Expect = 1.8
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 45 NVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECS 104
++ PV Q + C GQ++ P+ S T++ + RN S+ LE +
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYSPK--RCHSPRVTTISDQRKRNSTDYSIRISSITLEDA 597
Query: 105 GRKGSSQRTPRQPSATRLPKWGGPGRRQQVRG 136
G + P+ + GPG + VRG
Sbjct: 598 GTYYCMKLRRAIPANVEIK--SGPGTQMSVRG 627
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 28.5 bits (62), Expect = 1.8
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 45 NVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECS 104
++ PV Q + C GQ++ P+ S T++ + RN S+ LE +
Sbjct: 540 SLLPVGPIQWFRGACPGQKLIYSPK--RCHSPRVTTISDQRKRNSTDYSIRISSITLEDA 597
Query: 105 GRKGSSQRTPRQPSATRLPKWGGPGRRQQVRG 136
G + P+ + GPG + VRG
Sbjct: 598 GTYYCMKLRRAIPANVEIK--SGPGTQMSVRG 627
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 28.5 bits (62), Expect = 1.8
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 54 MLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLECSGRKGSSQRT 113
+L C G R A Q+ A + P N++S +L AL R GS RT
Sbjct: 2006 VLLEKCKGSRAAMSLQEEAEPT------PSPPSPNRESLAL----ALTAAHSRSGSEGRT 2055
Query: 114 PRQPSATRLPK 124
P + S+ L K
Sbjct: 2056 PERASSPGLNK 2066
>gi|46094081 development and differentiation enhancing factor 1 [Homo
sapiens]
Length = 1129
Score = 28.5 bits (62), Expect = 1.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 37 QLQSQVKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGR 96
Q S+V L P+ + ++S A Q+ ASE + +L T VP N + R
Sbjct: 1012 QQPSEVTLKSHPLDLSPNVQSRDAIQKQASEDSNDLTPTLPETPVPLPRKINTGKNKVRR 1071
Query: 97 VPALLEC 103
V + +C
Sbjct: 1072 VKTIYDC 1078
>gi|164519026 galactosidase, beta 1 like 3 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 56 KSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALLEC 103
KS+C+G R+ + D A V L T + NKD +P L +C
Sbjct: 459 KSICSGGRLRAHAHDVAQVFLDETMIGILNENNKDL----HIPELRDC 502
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 27.7 bits (60), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 86 GRNKDSTSLGR-----VPALLEC---SGRKGSSQRTPRQPSATRLP--KWGGPG 129
G + T LGR + AL+ C R GS++R QP+ LP +W PG
Sbjct: 775 GLDTSGTLLGRPCLEPISALMICVEADTRPGSARRLTLQPAGASLPSREWSSPG 828
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 63 RMASEPQDSAAVSLHTTSV--PETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
R A+E +D A L T S P R S+ G ALL G++QR+P A
Sbjct: 4 RAAAESRDHRA-RLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRAR 62
Query: 121 RLPKWGGPGRRQQ 133
P+ G G R++
Sbjct: 63 AAPQQGDGGARRE 75
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 63 RMASEPQDSAAVSLHTTSV--PETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
R A+E +D A L T S P R S+ G ALL G++QR+P A
Sbjct: 4 RAAAESRDHRA-RLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRAR 62
Query: 121 RLPKWGGPGRRQQ 133
P+ G G R++
Sbjct: 63 AAPQQGDGGARRE 75
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 63 RMASEPQDSAAVSLHTTSV--PETTGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT 120
R A+E +D A L T S P R S+ G ALL G++QR+P A
Sbjct: 4 RAAAESRDHRA-RLRTLSEARPGDWERRAGSSLCGSAEALLLSPHVTGAAQRSPTPGRAR 62
Query: 121 RLPKWGGPGRRQQ 133
P+ G G R++
Sbjct: 63 AAPQQGDGGARRE 75
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 27.7 bits (60), Expect = 3.1
Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 28 HHSHAAHSGQLQSQVKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGR 87
HH HAA G + + L ++P D AA S T P G
Sbjct: 172 HHEHAARQGAVPAADGLGLSP----------------KPPAPDFAAPSQAGTLRPHPLG- 214
Query: 88 NKDSTSLGRVPALLECSGRKGSSQRTPRQPSATRLP--KWGGPGRRQQ 133
P + C R+G + PSAT KWG P + ++
Sbjct: 215 ---------PPPVQACGAREGIKREASSAPSATSPTPGKWGQPKKGKE 253
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 86 GRNKDSTSLGRVP----ALLECSGRKGSSQRTPRQPSATRLPKWGGP 128
G N+D + VP G + SSQR+P P+ R P+ G P
Sbjct: 758 GENRDVEAQRLVPDGDGRTSPLGGARSSSQRSPVGPAGVRSPRPGSP 804
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 43 KLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVP-----------ETTGRNKDS 91
KL+V V + LK++ G +P D A+V L + + G N+ S
Sbjct: 675 KLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSRHRYAEQENGINQGS 734
Query: 92 TSLGRVPALLECSGRKGS------SQRTPRQPSATRLPKWGGPGRRQ 132
+ L+ + G ++ P +P+ATR +W P R+
Sbjct: 735 AQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESRK 781
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 43 KLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVP-----------ETTGRNKDS 91
KL+V V + LK++ G +P D A+V L + + G N+ S
Sbjct: 675 KLSVGDVCISLTLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSRHRYAEQENGINQGS 734
Query: 92 TSLGRVPALLECSGRKGS------SQRTPRQPSATRLPKWGGPGRRQ 132
+ L+ + G ++ P +P+ATR +W P R+
Sbjct: 735 AQMLSENGELKFPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESRK 781
>gi|239752961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 27.3 bits (59), Expect = 4.1
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 55 LKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGR--------VPALLEC--- 103
L S AS P S A ++ SV T R + S L + +P L C
Sbjct: 186 LSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLL 245
Query: 104 ----SGRKGSSQRTPRQPSATRLPKWG 126
G GS + +P AT L KWG
Sbjct: 246 PTQSPGPPGSPEPRGAEPGATGLDKWG 272
>gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo
sapiens]
Length = 305
Score = 27.3 bits (59), Expect = 4.1
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 55 LKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGR--------VPALLEC--- 103
L S AS P S A ++ SV T R + S L + +P L C
Sbjct: 125 LSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLL 184
Query: 104 ----SGRKGSSQRTPRQPSATRLPKWG 126
G GS + +P AT L KWG
Sbjct: 185 PTQSPGPPGSPEPRGAEPGATGLDKWG 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.124 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,935,649
Number of Sequences: 37866
Number of extensions: 252303
Number of successful extensions: 803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 65
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.