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Search of human proteins with 239757105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757105 PREDICTED: hypothetical protein [Homo sapiens] 319 7e-88
gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo ... 319 7e-88
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 37 0.006
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 37 0.006
gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens] 35 0.019
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 34 0.055
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 34 0.055
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 33 0.094
gi|239756902 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ... 33 0.12
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ... 33 0.12
gi|239756595 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|239740990 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 32 0.16
gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 32 0.21
gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 32 0.21
gi|5032169 telomeric repeat binding factor 2 [Homo sapiens] 32 0.27
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 31 0.36
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ... 31 0.36
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 31 0.36
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 31 0.36
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 31 0.36
gi|239753043 PREDICTED: hypothetical protein [Homo sapiens] 31 0.46
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 31 0.46
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 30 0.61
gi|16975496 cortactin binding protein 2 [Homo sapiens] 30 0.61
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 30 0.79
gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo ... 30 0.79
gi|55956910 meningioma 1 [Homo sapiens] 30 0.79
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 30 0.79
>gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 319 bits (817), Expect = 7e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL 60
MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL
Sbjct: 1 MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL 60
Query: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR
Sbjct: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
Query: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV 152
PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV
Sbjct: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV 152
>gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo
sapiens]
Length = 152
Score = 319 bits (817), Expect = 7e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL 60
MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL
Sbjct: 1 MQSLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLAL 60
Query: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR
Sbjct: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
Query: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV 152
PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV
Sbjct: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRKCKV 152
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 37.0 bits (84), Expect = 0.006
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 74 CTPSRPAPCAPE-MQSPRPPRTLHTFR---PGSVGTGNAKSEPLRALHTFRPCTMSTGNA 129
C P APCAP S RPPR R G+ G G A +EP A F+ T +
Sbjct: 477 CAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDT 536
Query: 130 KSETSPDSAHLPA 142
+S H P+
Sbjct: 537 NGYSSGGGGHSPS 549
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.006
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 74 CTPSRPAPCAPE-MQSPRPPRTLHTFR---PGSVGTGNAKSEPLRALHTFRPCTMSTGNA 129
C P APCAP S RPPR R G+ G G A +EP A F+ T +
Sbjct: 74 CAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDT 133
Query: 130 KSETSPDSAHLPA 142
+S H P+
Sbjct: 134 NGYSSGGGGHSPS 146
>gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens]
Length = 540
Score = 35.4 bits (80), Expect = 0.019
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 11 HTFPPCAIGTGNAKSEPSPGSAHLP-TLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLS 69
H P + T + + PSP LP ++ +VG G+ PS S+S
Sbjct: 109 HVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQ--GIGIPS-------RTNSMS 159
Query: 70 LSGLCTPSRPAP---CAPEMQSPRPPRTLHTF------RPGSVGTGNAKSEPLRALHTFR 120
SGL +P+R +P C P+ Q R P T+++ R + G N+ S +
Sbjct: 160 SSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNI------- 212
Query: 121 PCTMSTGNAKSETSPDSAHLPARLRRHRK 149
T +++ T D + PA R+R+
Sbjct: 213 --FNGTDGSENVTGLDLSDFPALADRNRR 239
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 33.9 bits (76), Expect = 0.055
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 12 TFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGD--LSGLCTPSGLALSALEMQSLS 69
TF P + S+ + +P +K D ++ LCTPS A S S
Sbjct: 2002 TFLPASTSQAQLSSQKMESFSAVPP---TKEKVSTQDQPMANLCTPSSTA------NSCS 2052
Query: 70 LSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGNA 129
S TP P +P T +P SV + S P + P T+++
Sbjct: 2053 SSASNTPGAPETHPSSSPTPTSSNTQEEAQPSSVSDLSPMSMPFASNSEPAPLTLTSPRM 2112
Query: 130 KSETSPDSAHLP 141
+ + D+++LP
Sbjct: 2113 VAADNQDTSNLP 2124
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 33.9 bits (76), Expect = 0.055
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 12 TFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGD--LSGLCTPSGLALSALEMQSLS 69
TF P + S+ + +P +K D ++ LCTPS A S S
Sbjct: 2002 TFLPASTSQAQLSSQKMESFSAVPP---TKEKVSTQDQPMANLCTPSSTA------NSCS 2052
Query: 70 LSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGNA 129
S TP P +P T +P SV + S P + P T+++
Sbjct: 2053 SSASNTPGAPETHPSSSPTPTSSNTQEEAQPSSVSDLSPMSMPFASNSEPAPLTLTSPRM 2112
Query: 130 KSETSPDSAHLP 141
+ + D+++LP
Sbjct: 2113 VAADNQDTSNLP 2124
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.1 bits (74), Expect = 0.094
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 7 LRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSALEMQ 66
L+ L + P A+G+ + S PS + H+ Q L+G P+GL+
Sbjct: 826 LKRLQSLIPSALGSASPASSPSQVDTPSSSSFHIQQ------LAGFSAPAGLSPLLPSSS 879
Query: 67 SLSLSGLC-TPSRPAPCA 83
S G C +PS P P A
Sbjct: 880 SSPPPGACGSPSAPTPSA 897
>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 77 SRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
+RPAP P +P P R + PG G+ N ++ P L +R
Sbjct: 78 ARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAWR 121
>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 77 SRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
+RPAP P +P P R + PG G+ N ++ P L +R
Sbjct: 78 ARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAWR 121
>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 77 SRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
+RPAP P +P P R + PG G+ N ++ P L +R
Sbjct: 78 ARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAWR 121
>gi|239756595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 32.3 bits (72), Expect = 0.16
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 12 TFPPCAIGTGNAKSEPSP--GSAHLPTLHHVHQKCKVGD-LSGLCTPSGLALSALEMQSL 68
T P C + G A+S P G L H H L G C P ALS
Sbjct: 54 TCPVCVVRMGLAESWPPTLGGGEALRGAHEFHAVISTSSYLPGACPP---ALSG------ 104
Query: 69 SLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKS 110
S S S P PC P + PRT + P + A+S
Sbjct: 105 SASAAFGRSEPGPCRPSEGASPWPRTRSSRSPQATALSRARS 146
>gi|239740990 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 32.3 bits (72), Expect = 0.16
Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 55 PSGLALSALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLR 114
P+ +L L+ Q L L G PS P A + + LH G S+P
Sbjct: 59 PAHASLQPLQAQLLHLGGPSRPSLCLPSASTVPKSASQQILHAQHLPHCGPPKPSSQPFS 118
Query: 115 ALHTFRPC--TMSTGNAKSETS--------------PDSAHLPARLRRHRKC 150
+ +T C S G A + PDS P+ L R R C
Sbjct: 119 SFYTPSSCHPVASLGQAHASQGPFQAQLLSHGNLPWPDSCLSPSSLDRPRSC 170
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 32.3 bits (72), Expect = 0.16
Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 40/132 (30%)
Query: 9 ALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSALEMQSL 68
AL PP G G +EP PG L +L+ + + P+ LA A +QSL
Sbjct: 110 ALEALPP---GQGLGPAEP-PGLPQLQSLNLSGNRLRE-------LPADLARCAPRLQSL 158
Query: 69 SLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGN 128
+L+G C S PA FRPG++ PL + + N
Sbjct: 159 NLTGNCLDSFPA---------------ELFRPGAL--------PLLSE------LAAADN 189
Query: 129 AKSETSPDSAHL 140
E SPD AHL
Sbjct: 190 CLRELSPDIAHL 201
>gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo
sapiens]
Length = 171
Score = 32.0 bits (71), Expect = 0.21
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 19 GTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLSLSGLCTPSR 78
GT + G A L HHV GLC + L++Q LS +GL
Sbjct: 52 GTEQVVEGATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLA 111
Query: 79 PAPCAPEMQSPRPPRTLHTFRPGSV 103
A C E+ PRP +L TF G V
Sbjct: 112 AAHCCQEV--PRP--SLLTFPKGQV 132
>gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo
sapiens]
Length = 171
Score = 32.0 bits (71), Expect = 0.21
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 19 GTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLSLSGLCTPSR 78
GT + G A L HHV GLC + L++Q LS +GL
Sbjct: 52 GTEQVVEGATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLA 111
Query: 79 PAPCAPEMQSPRPPRTLHTFRPGSV 103
A C E+ PRP +L TF G V
Sbjct: 112 AAHCCQEV--PRP--SLLTFPKGQV 132
>gi|5032169 telomeric repeat binding factor 2 [Homo sapiens]
Length = 500
Score = 31.6 bits (70), Expect = 0.27
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 7/125 (5%)
Query: 17 AIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTP-------SGLALSALEMQSLS 69
A TG +P+PG P Q G+ T SG S L
Sbjct: 250 ASSTGKEDKQPAPGPVEKPPREPARQLRNPPTTIGMMTLKAAFKTLSGAQDSEAAFAKLD 309
Query: 70 LSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGNA 129
L P++ P +P +++ RP + + + G G ++ +P T + +
Sbjct: 310 QKDLVLPTQALPASPALKNKRPRKDENESSAPADGEGGSELQPKNKRMTISRLVLEEDSQ 369
Query: 130 KSETS 134
+E S
Sbjct: 370 STEPS 374
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 31.2 bits (69), Expect = 0.36
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
+ L Q L +SGL P R AP A + RP T + P + +S +L + R
Sbjct: 89 AGLHAQQLPISGLAVPGRSAP-AVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSS-R 146
Query: 121 PCTMSTGNAKSETSPDSAHLP--ARLRRH 147
+ T ++ + ++ S H P RLR H
Sbjct: 147 VRAVKTKSSSTHSTWSSNHYPGGCRLRAH 175
>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
Length = 233
Score = 31.2 bits (69), Expect = 0.36
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120
+ L Q L +SGL P R AP A + RP T + P + +S +L + R
Sbjct: 89 AGLHAQQLPISGLAVPGRSAP-AVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSS-R 146
Query: 121 PCTMSTGNAKSETSPDSAHLP--ARLRRH 147
+ T ++ + ++ S H P RLR H
Sbjct: 147 VRAVKTKSSSTHSTWSSNHYPGGCRLRAH 175
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 31.2 bits (69), Expect = 0.36
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 75 TPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHT 118
+P+RPAP A SP P R F P S + +++S P RA T
Sbjct: 37 SPARPAPSA----SPSPSRAAGPFLPPSHASTSSRSPPPRARRT 76
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 31.2 bits (69), Expect = 0.36
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 75 TPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHT 118
+P+RPAP A SP P R F P S + +++S P RA T
Sbjct: 37 SPARPAPSA----SPSPSRAAGPFLPPSHASTSSRSPPPRARRT 76
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 31.2 bits (69), Expect = 0.36
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 68 LSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALH 117
L+ L + P PCAP P PP T P SV + A L LH
Sbjct: 207 LTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLH 256
>gi|239753043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 451
Score = 30.8 bits (68), Expect = 0.46
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 15 PCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSALEMQSLSLSGLC 74
P G A S P P + P L + + G + G GLA +A M LSLS LC
Sbjct: 28 PSGAVAGGAPS-PLPATRSTPPLPC---RARPGGVVGWGPGGGLARAAPAMNGLSLSELC 83
Query: 75 TPSRPAPCAPEMQSP---RPPRTLHTF----RPGSVGTGNAKSEPLRA 115
PC + + PP ++ PG G G A LRA
Sbjct: 84 CLFCCPPCPGRIAAKLAFLPPEATYSLVTEPEPGPGGAGAAPLGTLRA 131
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 30.8 bits (68), Expect = 0.46
Identities = 31/107 (28%), Positives = 34/107 (31%), Gaps = 29/107 (27%)
Query: 15 PCAIGTGNAKSEPSPGSAH------------LPTLHHVHQKCKVGDLSGL--CTPSGLAL 60
P A G S SP SA L TL H+ + D GL C P G A
Sbjct: 41 PGASGPAAPSSPSSPSSARSVGSFMSRVLKTLSTLSHLSSEGAAPDRGGLRSCFPPGPAA 100
Query: 61 SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGN 107
+ P PC P SP PP PG G N
Sbjct: 101 APT---------------PPPCPPPPASPAPPACAAEPVPGVAGLRN 132
Score = 28.9 bits (63), Expect = 1.8
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 80 APCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGNAKSETSPDSAH 139
AP P + +P T P S GT SEP ++L RP S ++ S TSP S+
Sbjct: 1008 APSHPGSLAKKPESTTKR-SPSSKGT----SEPEKSLRKGRPALASQESSLSSTSP-SSP 1061
Query: 140 LPARL 144
LP ++
Sbjct: 1062 LPVKV 1066
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 30.4 bits (67), Expect = 0.61
Identities = 34/145 (23%), Positives = 47/145 (32%), Gaps = 15/145 (10%)
Query: 3 SLSPLRALHTFPPCAIGTGNAKSEPSPGSAHLPTLHHVHQKCKVGDLSGLCTPSGLALSA 62
S P + L FP + P PG +H+ G + GLAL
Sbjct: 1242 SEKPSQTLQYFPRGEVPGRKQPQGPGPGFSHMQ-----------GMMGEQAPRMGLALPG 1290
Query: 63 LEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPC 122
+ + TP P AP M P R + G +G + P ++ +P
Sbjct: 1291 MG----GPGPVGTPDIPLGTAPSMPGHNPMRPPAFLQQGMMGPHHRMMSPAQSTMPGQPT 1346
Query: 123 TMSTGNAKSETSPDSAHLPARLRRH 147
MS A P PA L H
Sbjct: 1347 LMSNPAAAVGMIPGKDRGPAGLYTH 1371
Score = 29.3 bits (64), Expect = 1.4
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 27/111 (24%)
Query: 9 ALHTFPPCAIGTGNAKSE--------PSPGSAHL--PTLHHVHQKC---KVGDLSGLCTP 55
+L+T PP G G + SPG L PT+H V G+L TP
Sbjct: 830 SLNTAPPVQRGLGRKPLDISVAGSQVHSPGINPLKSPTMHQVQSPMLGSPSGNLKSPQTP 889
Query: 56 SGLA------LSALEMQSLSLSG--------LCTPSRPAPCAPEMQSPRPP 92
S LA +A ++S + G L +PS PAP SP+PP
Sbjct: 890 SQLAGMLAGPAAAASIKSPPVLGSAAASPVHLKSPSLPAPSPGWTSSPKPP 940
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 30.4 bits (67), Expect = 0.61
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 40 VHQKCKVGDLSGLCTPSGLALSALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFR 99
+ ++ GDL G P+ SA +++ S TP P P + S P T T
Sbjct: 356 IDRQASYGDLIGASVPAFPPPSANKIEENGPSTGSTPD-PTSSTPPLPSNAAPPTAQT-- 412
Query: 100 PGSVGTGNAKSEPLRALHTFRPC 122
PG + N+++ P+ +LH+ PC
Sbjct: 413 PG-IAPQNSQAPPMHSLHS--PC 432
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 30.0 bits (66), Expect = 0.79
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 67 SLSLSGLCTPSRPAPCAPEMQSPRPPRT-LHTFRPGSVGTGNAKSEPLR----ALHTFRP 121
SLS TPS SP PP+ L T++P V A+++P R LH +RP
Sbjct: 1960 SLSSHRYETPSDAIEVISPASSPAPPQEKLQTYQPEVVKANQAENDPTRQYEGPLHHYRP 2019
>gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo
sapiens]
Length = 227
Score = 30.0 bits (66), Expect = 0.79
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 72 GLCTPSRPAPCAPEM----QSPRPPRTLHTFRPGSVGTGNAKSEPLR 114
GL TP PC P +S PP T+ R +G G A++ +R
Sbjct: 25 GLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGLGVGQAEATSVR 71
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 30.0 bits (66), Expect = 0.79
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 71 SGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLR 114
SG + + PAPC P QSP + H P S G+ + EP R
Sbjct: 179 SGASSHAVPAPCLPLDQSPNRAASFHGL-PSSSGSDSHSLEPRR 221
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 0.79
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 81 PCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFRPCTMSTGNAKSETSPDSAHL 140
P P M+SP+ R T P + N + P R T P T+ GN +S T L
Sbjct: 229 PINPSMESPKLTRPFPTGTPPPLPPKNVPATPPR---TGSPLTIGPGNDQSATEVKIEKL 285
Query: 141 PA 142
P+
Sbjct: 286 PS 287
Score = 28.5 bits (62), Expect = 2.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 71 SGLCTPSRPA----PCAPEMQSPRPPR--TLHTFRPGSVGTGNAKSEPLRALHTFRPCTM 124
SG +P+RPA PC P PPR + PG G G+ +H+ P +
Sbjct: 438 SGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFSPPIHSSSPPPI 497
Query: 125 -------STGNAKSETSPDSAHLP 141
ST + S S +A P
Sbjct: 498 APLARAESTSSISSTNSLSAATTP 521
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,152,331
Number of Sequences: 37866
Number of extensions: 441337
Number of successful extensions: 2566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 2337
Number of HSP's gapped (non-prelim): 319
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.