Search of human proteins with 239756770

Search of human proteins with 239756770

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756770 PREDICTED: similar to KIAA0160 [Homo sapiens]
         (172 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756770 PREDICTED: similar to KIAA0160 [Homo sapiens]            353   3e-98
gi|197333809 joined to JAZF1 [Homo sapiens]                           220   5e-58
gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a...    28   3.0  
gi|65507253 hypothetical protein LOC55196 [Homo sapiens]               28   3.0  
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]            27   8.7  
gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo...    27   8.7  
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    27   8.7  
gi|39930351 dynamin binding protein [Homo sapiens]                     27   8.7  
gi|47132534 STAM binding protein [Homo sapiens]                        27   8.7  
gi|42519912 STAM binding protein [Homo sapiens]                        27   8.7  
gi|5453545 STAM binding protein [Homo sapiens]                         27   8.7  
gi|125628665 hypothetical protein LOC388284 [Homo sapiens]             27   8.7  

>gi|239756770 PREDICTED: similar to KIAA0160 [Homo sapiens]
          Length = 172

 Score =  353 bits (907), Expect = 3e-98
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MCRAGGPGSPSRRRDTLGRPQSGAGQLVSSFAAYIFGFFHKNDKPSPNSENEQNSVTLEV 60
           MCRAGGPGSPSRRRDTLGRPQSGAGQLVSSFAAYIFGFFHKNDKPSPNSENEQNSVTLEV
Sbjct: 1   MCRAGGPGSPSRRRDTLGRPQSGAGQLVSSFAAYIFGFFHKNDKPSPNSENEQNSVTLEV 60

Query: 61  LLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVK 120
           LLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVK
Sbjct: 61  LLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVK 120

Query: 121 SYSLLFRVTRPRRREFNGMINGETMKILMSVKSFQPEENEIVRMGKRHLLHK 172
           SYSLLFRVTRPRRREFNGMINGETMKILMSVKSFQPEENEIVRMGKRHLLHK
Sbjct: 121 SYSLLFRVTRPRRREFNGMINGETMKILMSVKSFQPEENEIVRMGKRHLLHK 172


>gi|197333809 joined to JAZF1 [Homo sapiens]
          Length = 739

 Score =  220 bits (560), Expect = 5e-58
 Identities = 106/108 (98%), Positives = 106/108 (98%)

Query: 37  GFFHKNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQT 96
           GFFHKNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDV CPIRQVPTGKKQVPLNPDLNQT
Sbjct: 163 GFFHKNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQT 222

Query: 97  KPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRPRRREFNGMINGET 144
           KPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRP RREFNGMINGET
Sbjct: 223 KPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRPGRREFNGMINGET 270


>gi|112363100 SLIT-ROBO Rho GTPase activating protein 2 isoform a
            [Homo sapiens]
          Length = 1071

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 72   DVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNS 116
            D+ C  R V + K   P+ P   + KP  FP    +S     S S
Sbjct: 1017 DIACAFRPVKSVKMAAPVKPPATRPKPTVFPKTNATSPGVNSSTS 1061


>gi|65507253 hypothetical protein LOC55196 [Homo sapiens]
          Length = 1747

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 79  QVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNS 116
           ++ T  +Q   NP+ N +  GNF +L V++N  +P NS
Sbjct: 315 EIRTSFQQQWQNPNENVSTIGNFTNLKVNTNSKQPFNS 352


>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 332

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 52  EQNSVTLEVLLVKVCHKKRKDVCC 75
           E  +V L+V+L++V H++R   CC
Sbjct: 231 EVENVVLDVILLQVVHQRRATGCC 254


>gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo
           sapiens]
          Length = 859

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 26  QLVSSFAAYIFGFFHKNDKPSPNSENEQNSVTLEV--LLVKVCH---KKRKDVCCPIRQV 80
           Q V  F   +  F    ++  P +++++   T E+  L V++ H    KRK   C + + 
Sbjct: 228 QPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRR 287

Query: 81  PTGKKQVPLNPDLNQT 96
           P   +  PL  +  QT
Sbjct: 288 PASHQTFPLQQESGQT 303


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
            sapiens]
          Length = 4911

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 76   PIRQVPTG-KKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVKSYSLLFR-VTRPRR 133
            P+R+ P G   Q+P++PDL Q  P             +    H V S S++ R +  P  
Sbjct: 2607 PMRRPPQGLPNQLPVHPDLEQVPPS------------QQEQGHSVHSSSMVMRTLNHPLG 2654

Query: 134  REFN 137
             EF+
Sbjct: 2655 GEFS 2658


>gi|39930351 dynamin binding protein [Homo sapiens]
          Length = 1577

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 40   HKNDKPSPNSENEQNSVTLEVLLVKV------CHKKRKDVCCPIRQVPTGKKQVPLNPDL 93
            H +  P    +N  +++T     + V      C K+ +D   P ++   G     LNP  
Sbjct: 1367 HGSSSPRFPRQNSGSTLTFNPSSMAVSFTSGSCQKQPQDASPPPKECDQGTLSASLNPSN 1426

Query: 94   NQTKPGNFPS 103
            +++ P   PS
Sbjct: 1427 SESSPSRCPS 1436


>gi|47132534 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 50  ENEQNSVTLEVLLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSN 109
           E EQ     E++  +   K+R  +     +V  G    PL PDL +     FP+L VSS 
Sbjct: 158 EQEQFHAFEEMIRNQELEKERLKIVQEFGKVDPGLGG-PLVPDLEKPSLDVFPTLTVSS- 215

Query: 110 EFEPSNSH 117
             +PS+ H
Sbjct: 216 -IQPSDCH 222


>gi|42519912 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 50  ENEQNSVTLEVLLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSN 109
           E EQ     E++  +   K+R  +     +V  G    PL PDL +     FP+L VSS 
Sbjct: 158 EQEQFHAFEEMIRNQELEKERLKIVQEFGKVDPGLGG-PLVPDLEKPSLDVFPTLTVSS- 215

Query: 110 EFEPSNSH 117
             +PS+ H
Sbjct: 216 -IQPSDCH 222


>gi|5453545 STAM binding protein [Homo sapiens]
          Length = 424

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 50  ENEQNSVTLEVLLVKVCHKKRKDVCCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSN 109
           E EQ     E++  +   K+R  +     +V  G    PL PDL +     FP+L VSS 
Sbjct: 158 EQEQFHAFEEMIRNQELEKERLKIVQEFGKVDPGLGG-PLVPDLEKPSLDVFPTLTVSS- 215

Query: 110 EFEPSNSH 117
             +PS+ H
Sbjct: 216 -IQPSDCH 222


>gi|125628665 hypothetical protein LOC388284 [Homo sapiens]
          Length = 317

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 75  CPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRP 131
           CP   V       PL  +  + +PG  PSL VS ++ E   S  V    +L   T P
Sbjct: 252 CPSPLVTPTHALAPLGEEAGE-EPGGLPSLGVSDHKAEVDKSTQVDIDKMLSVCTAP 307


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,522,156
Number of Sequences: 37866
Number of extensions: 354397
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 14
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.