Guide to the Human Genome
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Name: LOC100293999 Sequence: fasta or formatted (350aa) NCBI GI: 239756412
Description:

PREDICTED: similar to dynamin 1, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            2.9         10           2
 D aspartate           2.3          8           1
 E glutamate          10.9         38           2
 F phenylalanine       2.9         10           1
 G glycine             5.1         18           2
 H histidine           2.3          8           1
 I isoleucine          1.4          5           1
 K lysine              2.6          9           1
 L leucine             9.7         34           3
 M methionine          1.1          4           1
 N asparagine          2.6          9           1
 P proline             2.3          8           1
 Q glutamine           7.4         26           1
 R arginine           16.0         56           3
 S serine             11.1         39           4
 T threonine           6.0         21           1
 V valine              4.0         14           1
 W tryptophan          2.0          7           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to dynamin 1, partial 
LOC100293963          0.450   PREDICTED: similar to dynamin 1, partial 
LOC100289668          0.126   PREDICTED: hypothetical protein XP_002343442, parti...
DNM1                  0.052   dynamin 1 isoform 2 
DNM1                  0.052   dynamin 1 isoform 1 
DNM3                  0.040   dynamin 3 isoform a 
DNM3                  0.040   dynamin 3 isoform b 
DNM2                  0.033   dynamin 2 isoform 4 
DNM2                  0.033   dynamin 2 isoform 2 
DNM2                  0.033   dynamin 2 isoform 1 
DNM2                  0.033   dynamin 2 isoform 3 
LOC730058             0.031   PREDICTED: UPF0621 protein C-like 
LOC730058             0.031   PREDICTED: UPF0621 protein C-like 
LOC730058             0.031   PREDICTED: UPF0621 protein C-like 
DEF6                  0.028   differentially expressed in FDCP 6 homolog 
SFRS16                0.019   splicing factor, arginine/serine-rich 16 
TCHH                  0.018   trichohyalin 
LOC100170229          0.018   hypothetical protein LOC100170229 
NUMA1                 0.018   nuclear mitotic apparatus protein 1 
LOC727858             0.016   PREDICTED: similar to dynamin 1 
LOC100288331          0.016   PREDICTED: hypothetical protein XP_002343417 
LOC100288161          0.016   PREDICTED: hypothetical protein XP_002343416 
LOC100288036          0.016   PREDICTED: hypothetical protein XP_002343372 
LOC100292293          0.013   PREDICTED: similar to apopolysialoglycoprotein [Hom...
ZNF598                0.013   zinc finger protein 598 
SFRS4                 0.012   splicing factor, arginine/serine-rich 4 
CCDC88B               0.012   coiled-coil domain containing 88 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.012   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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