Search of human proteins with 239756403

Search of human proteins with 239756403

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo
sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo ...   239   3e-64
gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]           222   4e-59
gi|22267436 nipsnap homolog 3A [Homo sapiens]                          28   1.5  
gi|45827701 pad-1-like [Homo sapiens]                                  28   2.0  
gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Ho...    27   4.5  
gi|20070323 solute carrier family 30 (zinc transporter), member ...    26   7.7  

>gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo
           sapiens]
          Length = 118

 Score =  239 bits (611), Expect = 3e-64
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60
           MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV
Sbjct: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60

Query: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM 118
           GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM
Sbjct: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM 118


>gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score =  222 bits (566), Expect = 4e-59
 Identities = 113/118 (95%), Positives = 115/118 (97%), Gaps = 2/118 (1%)

Query: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60
           MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV
Sbjct: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60

Query: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM 118
           GDALVRAVHVYYNLVGDALVRAVHVYYNLVG+ LVRAVHVYYNLVG+  GAVDPLFQM
Sbjct: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGE-LVRAVHVYYNLVGEQ-GAVDPLFQM 116


>gi|22267436 nipsnap homolog 3A [Homo sapiens]
          Length = 247

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 84
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 59  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGA 111
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+  A
Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAA 208



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 16  GDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 69
           GDA  R VHA+ NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 162 GDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211


>gi|45827701 pad-1-like [Homo sapiens]
          Length = 2298

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 15  VGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAV 53
           VG+  + V+ A+Y+   DAL   + + Y   G++L+ A+
Sbjct: 381 VGNLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISAI 419


>gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 307

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 66
           LV D LV+ VH Y  L GD L  AVH+  + +    VR
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 44  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 81
           LV D LV+ VH Y  L GD L  AVH+  + +    VR
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 59  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 96
           LV D LV+ VH Y  L GD L  AVH+  + +    VR
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 74  LVGDALVRAVHVYYNLVGDALVRAVHV 100
           LV D LV+ VH Y  L GD L  AVH+
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHL 135


>gi|20070323 solute carrier family 30 (zinc transporter), member 5
           isoform 1 [Homo sapiens]
          Length = 765

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 57  YNLVGDALVRAVHVYYNLVGDALVRAVH------VYYNLVGDALVRAVHVYYNLVGDALG 110
           YN +GDA   +       + ++L + +       ++Y L  + L   V ++Y ++ ++LG
Sbjct: 385 YNFMGDAFQHSSQSIPRFIKESLKQILEESDSRQIFYFLCLNLLFTFVELFYGVLTNSLG 444

Query: 111 AVDPLFQM 118
            +   F M
Sbjct: 445 LISDGFHM 452


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.145    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,771,886
Number of Sequences: 37866
Number of extensions: 126497
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 18
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.