Guide to the Human Genome
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Name: LOC100293793 Sequence: fasta or formatted (62aa) NCBI GI: 239755284
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            1.6          1           1
 D aspartate           1.6          1           1
 E glutamate          11.3          7           1
 F phenylalanine       0.0          0           0
 G glycine             6.5          4           1
 H histidine           4.8          3           2
 I isoleucine          9.7          6           3
 K lysine              1.6          1           1
 L leucine             1.6          1           1
 M methionine         11.3          7           1
 N asparagine         16.1         10           2
 P proline             1.6          1           1
 Q glutamine           1.6          1           1
 R arginine            9.7          6           1
 S serine             12.9          8           3
 T threonine           1.6          1           1
 V valine              1.6          1           1
 W tryptophan          4.8          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292724          0.901   PREDICTED: hypothetical protein 
LOC100291599          0.856   PREDICTED: hypothetical protein XP_002346265 
LOC100293021          0.847   PREDICTED: hypothetical protein 
LOC100291569          0.766   PREDICTED: hypothetical protein XP_002346264 
LOC100293418          0.649   PREDICTED: hypothetical protein 
LOC100293129          0.315   PREDICTED: hypothetical protein 
LOC642424             0.288   PREDICTED: similar to hCG1742442 
SMARCAL1              0.009   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.009   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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