Guide to the Human Genome
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Name: LOC642574 Sequence: fasta or formatted (484aa) NCBI GI: 239754976
Description:

PREDICTED: IQ motif and ankyrin repeat domain-containing protein LOC642574

Not currently referenced in the text

Other entries for this name:
alt prot {580aa} PREDICTED: IQ motif and ankyrin repeat domain-containing protein ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         51           3
 C cysteine            1.4          7           1
 D aspartate           4.5         22           1
 E glutamate          11.4         55           3
 F phenylalanine       2.5         12           2
 G glycine             6.0         29           2
 H histidine           1.4          7           1
 I isoleucine          1.2          6           1
 K lysine              2.9         14           1
 L leucine            12.0         58           2
 M methionine          1.9          9           1
 N asparagine          1.2          6           1
 P proline             6.2         30           2
 Q glutamine           8.7         42           3
 R arginine           11.2         54           3
 S serine              3.7         18           2
 T threonine           4.5         22           1
 V valine              5.6         27           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: IQ motif and ankyrin repeat domain-conta... 
LOC642574             0.937   PREDICTED: IQ motif and ankyrin repeat domain-conta...
ANK1                  0.036   ankyrin 1 isoform 9 
ASB3                  0.036   ankyrin repeat and SOCS box-containing protein 3 iso...
ASB3                  0.036   ankyrin repeat and SOCS box-containing protein 3 isof...
ANK3                  0.034   ankyrin 3 isoform 1 
ANKRD11               0.034   ankyrin repeat domain 11 
ANK1                  0.033   ankyrin 1 isoform 1 
ANK1                  0.033   ankyrin 1 isoform 3 
ANK1                  0.033   ankyrin 1 isoform 2 
ANK1                  0.033   ankyrin 1 isoform 4 
PLEC1                 0.031   plectin 1 isoform 11 
PLEC1                 0.031   plectin 1 isoform 10 
PLEC1                 0.031   plectin 1 isoform 8 
PLEC1                 0.031   plectin 1 isoform 7 
PLEC1                 0.031   plectin 1 isoform 6 
PLEC1                 0.031   plectin 1 isoform 3 
PLEC1                 0.031   plectin 1 isoform 2 
PLEC1                 0.031   plectin 1 isoform 1 
ANK2                  0.030   ankyrin 2 isoform 3 
ANK2                  0.030   ankyrin 2 isoform 2 
ANK2                  0.030   ankyrin 2 isoform 1 
ANKS6                 0.030   ankyrin repeat and sterile alpha motif domain contai...
ASB2                  0.030   ankyrin repeat and SOCS box-containing protein 2 [Ho...
ANKRD17               0.030   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.030   ankyrin repeat domain protein 17 isoform b 
ANKRD28               0.029   ankyrin repeat domain 28 
TNKS2                 0.029   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
MYH14                 0.028   myosin, heavy chain 14 isoform 1 
MYH14                 0.028   myosin, heavy chain 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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